Wall clock time and date at job start Tue Mar 31 2020 20:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47347 * 2 1 4 4 C 1.50705 * 109.47104 * 240.00343 * 2 1 3 5 5 O 1.21288 * 119.99877 * 257.07844 * 4 2 1 6 6 N 1.34771 * 119.99955 * 77.08389 * 4 2 1 7 7 C 1.46929 * 120.63082 * 174.37489 * 6 4 2 8 8 C 1.53192 * 108.89180 * 233.51485 * 7 6 4 9 9 C 1.53080 * 109.29236 * 305.57296 * 8 7 6 10 10 N 1.46499 * 109.45122 * 181.24647 * 9 8 7 11 11 C 1.36936 * 120.00026 * 301.81348 * 10 9 8 12 12 H 1.08001 * 119.99769 * 320.68094 * 11 10 9 13 13 C 1.38806 * 120.00395 * 140.68222 * 11 10 9 14 14 N 1.31623 * 119.99914 * 341.07173 * 13 11 10 15 15 Si 1.86799 * 120.00307 * 161.06488 * 13 11 10 16 16 H 1.48506 * 109.46898 * 60.00425 * 15 13 11 17 17 H 1.48497 * 109.47261 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47349 * 300.00504 * 15 13 11 19 19 C 1.46498 * 120.00237 * 121.81238 * 10 9 8 20 20 C 1.53007 * 109.47064 * 89.99491 * 19 10 9 21 21 O 1.42897 * 109.46611 * 65.00542 * 20 19 10 22 22 C 1.53041 * 109.65653 * 61.15456 * 9 8 7 23 23 C 1.46927 * 120.63231 * 354.34359 * 6 4 2 24 24 N 1.46504 * 109.47279 * 120.00007 * 2 1 3 25 25 C 1.34428 * 126.81933 * 34.71501 * 24 2 1 26 26 N 1.30834 * 108.07204 * 179.89150 * 25 24 2 27 27 C 1.33237 * 109.83486 * 0.37800 * 26 25 24 28 28 N 1.30719 * 108.94379 * 359.76495 * 27 26 25 29 29 H 1.09000 * 109.46727 * 293.59345 * 1 2 3 30 30 H 1.08999 * 109.46959 * 53.59481 * 1 2 3 31 31 H 1.09005 * 109.47066 * 173.59552 * 1 2 3 32 32 H 1.09005 * 109.58102 * 353.36779 * 7 6 4 33 33 H 1.08998 * 109.59202 * 113.65036 * 7 6 4 34 34 H 1.08999 * 109.49843 * 65.38415 * 8 7 6 35 35 H 1.09001 * 109.49312 * 185.48363 * 8 7 6 36 36 H 1.08999 * 109.34668 * 301.13375 * 9 8 7 37 37 H 0.96994 * 119.99845 * 179.97438 * 14 13 11 38 38 H 1.08989 * 109.47373 * 209.99891 * 19 10 9 39 39 H 1.09009 * 109.46846 * 329.99916 * 19 10 9 40 40 H 1.08999 * 109.47006 * 185.00033 * 20 19 10 41 41 H 1.08998 * 109.47226 * 305.00486 * 20 19 10 42 42 H 0.96701 * 113.99593 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.49347 * 178.74905 * 22 9 8 44 44 H 1.08996 * 109.52252 * 58.66966 * 22 9 8 45 45 H 1.08995 * 109.58930 * 246.20706 * 23 6 4 46 46 H 1.08999 * 109.58696 * 6.49076 * 23 6 4 47 47 H 1.07997 * 125.96693 * 0.03278 * 25 24 2 48 48 H 1.07996 * 125.53564 * 179.79560 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4559 -1.8437 -1.1460 6 7 2.0110 -0.0862 -2.4248 7 6 2.6088 -0.7166 -3.6098 8 6 3.6078 0.2590 -4.2398 9 6 2.9067 1.5908 -4.5191 10 7 3.8512 2.5167 -5.1490 11 6 5.0152 2.8483 -4.5086 12 1 5.0171 3.0087 -3.4405 13 6 6.1927 2.9784 -5.2320 14 7 6.2933 2.4383 -6.4281 15 14 7.6345 3.9201 -4.5082 16 1 8.0615 3.2741 -3.2410 17 1 8.7638 3.9141 -5.4724 18 1 7.2242 5.3209 -4.2358 19 6 3.5504 3.0878 -6.4641 20 6 2.7797 4.3977 -6.2871 21 8 3.6163 5.3587 -5.6401 22 6 2.4022 2.1924 -3.2054 23 6 1.3889 1.2373 -2.5669 24 7 2.0184 -0.6906 1.1962 25 6 1.4529 -1.7486 1.8029 26 7 2.1931 -2.0691 2.8331 27 6 3.2303 -1.2373 2.9208 28 7 3.1670 -0.3752 1.9403 29 1 -0.3633 0.4113 0.9418 30 1 -0.3633 0.6099 -0.8271 31 1 -0.3633 -1.0213 -0.1146 32 1 3.1259 -1.6301 -3.3159 33 1 1.8267 -0.9552 -4.3306 34 1 4.4378 0.4240 -3.5528 35 1 3.9850 -0.1589 -5.1732 36 1 2.0632 1.4215 -5.1884 37 1 7.1160 2.5295 -6.9337 38 1 4.4809 3.2829 -6.9970 39 1 2.9449 2.3844 -7.0358 40 1 2.4788 4.7770 -7.2637 41 1 1.8937 4.2186 -5.6781 42 1 3.1916 6.2152 -5.4947 43 1 1.9231 3.1510 -3.4046 44 1 3.2417 2.3394 -2.5260 45 1 0.5076 1.1604 -3.2036 46 1 1.0988 1.6119 -1.5852 47 1 0.5472 -2.2483 1.4927 48 1 3.9989 -1.2703 3.6787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264198346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:46 Heat of formation + Delta-G solvation = 44.026453 kcal Electronic energy + Delta-G solvation = -30747.013225 eV Core-core repulsion = 26647.449893 eV Total energy + Delta-G solvation = -4099.563331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.21449 -40.24712 -37.75873 -36.23227 -35.27574 -34.66404 -32.13719 -31.46483 -31.02323 -30.41333 -29.83155 -27.75641 -25.82421 -24.68000 -23.38022 -23.06627 -22.04368 -21.80301 -20.65428 -20.00947 -19.10582 -17.64618 -17.35360 -16.61420 -16.24814 -15.87343 -15.58172 -15.18583 -14.88978 -14.75813 -14.46255 -14.33121 -14.02386 -13.78214 -13.57774 -13.46461 -13.18234 -12.87800 -12.70218 -12.58939 -12.53166 -12.13224 -12.01892 -11.71832 -11.53425 -11.20658 -10.93611 -10.86011 -10.65994 -10.56225 -10.46748 -10.14126 -10.09605 -9.92320 -9.90468 -9.82121 -9.54473 -9.46737 -9.10805 -8.57786 -8.38558 -6.51280 -5.71435 -3.30657 1.50200 1.99494 2.44900 2.91292 3.01745 3.45004 3.48979 3.54278 4.06190 4.19420 4.24787 4.43436 4.54491 4.68579 4.90140 4.99704 5.03273 5.08345 5.19888 5.23450 5.33732 5.38124 5.43995 5.50525 5.58179 5.74320 5.86629 5.97075 5.99208 6.05251 6.11040 6.16198 6.30243 6.35653 6.37947 6.52840 6.61628 6.66249 6.70826 6.73969 7.03831 7.16638 7.34785 7.65549 7.89185 7.98294 8.02995 8.44928 8.63577 9.24078 9.87174 10.42332 11.30202 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003254 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.666745 B = 8604.011354 C = 9362.484752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.130 0.870 4 C 0.506 3.494 5 O -0.533 6.533 6 N -0.595 5.595 7 C 0.113 3.887 8 C -0.133 4.133 9 C 0.177 3.823 10 N -0.571 5.571 11 C -0.236 4.236 12 H 0.053 0.947 13 C 0.021 3.979 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.285 1.285 17 H -0.293 1.293 18 H -0.281 1.281 19 C 0.142 3.858 20 C 0.061 3.939 21 O -0.541 6.541 22 C -0.143 4.143 23 C 0.102 3.898 24 N -0.362 5.362 25 C 0.272 3.728 26 N -0.549 5.549 27 C 0.198 3.802 28 N -0.313 5.313 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.252 0.748 38 H 0.102 0.898 39 H 0.036 0.964 40 H 0.018 0.982 41 H 0.021 0.979 42 H 0.348 0.652 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.214 0.786 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.256 -2.073 8.552 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.147 0.853 4 C 0.291 3.709 5 O -0.410 6.410 6 N -0.328 5.328 7 C -0.009 4.009 8 C -0.173 4.173 9 C 0.070 3.930 10 N -0.289 5.289 11 C -0.366 4.366 12 H 0.071 0.929 13 C -0.179 4.179 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.208 1.208 19 C 0.016 3.984 20 C -0.019 4.019 21 O -0.342 6.342 22 C -0.183 4.183 23 C -0.021 4.021 24 N -0.152 5.152 25 C -0.025 4.025 26 N -0.277 5.277 27 C -0.105 4.105 28 N -0.140 5.140 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.055 0.945 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.191 0.809 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.230 0.770 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.979 -2.861 8.456 17.437 hybrid contribution 0.258 1.109 0.042 1.140 sum -14.721 -1.751 8.498 17.088 Atomic orbital electron populations 1.22230 0.90091 1.04715 1.05090 1.21251 0.96448 0.98065 0.81231 0.85258 1.20410 0.79382 0.86753 0.84385 1.90740 1.46961 1.17950 1.85300 1.48089 1.56885 1.19312 1.08495 1.21821 0.96600 0.97285 0.85172 1.22303 0.97995 0.95695 1.01266 1.20315 0.91937 0.88978 0.91810 1.43679 1.19202 1.47696 1.18365 1.18631 0.84666 1.41068 0.92204 0.92931 1.25067 0.97096 0.98703 0.97004 1.69916 1.26481 1.44234 1.13102 0.86498 0.81935 0.80859 0.78139 1.21143 1.21925 1.20777 1.21035 1.00286 0.88592 0.88502 1.23071 0.93253 0.92777 0.92831 1.86891 1.41775 1.23689 1.81884 1.22415 0.98194 0.97553 1.00143 1.22026 0.96571 0.82370 1.01149 1.50090 1.18950 1.24713 1.21458 1.25847 0.99134 0.87839 0.89663 1.70555 1.07246 1.28691 1.21170 1.25990 0.97290 0.90089 0.97146 1.78123 1.02692 1.25229 1.07934 0.89954 0.88621 0.90603 0.89791 0.91839 0.91002 0.90661 0.93530 0.93766 0.88064 0.94542 0.96412 0.96122 0.80941 0.91237 0.91123 0.91057 0.90656 0.77014 0.76676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.41 37.16 0.31 -0.72 16 2 C 0.14 1.49 2.91 -69.08 -0.20 1.29 16 3 H 0.13 1.36 7.01 -51.93 -0.36 1.00 16 4 C 0.51 7.19 6.97 -10.99 -0.08 7.11 16 5 O -0.53 -9.64 15.79 5.55 0.09 -9.56 16 6 N -0.59 -8.01 2.97 -172.76 -0.51 -8.52 16 7 C 0.11 1.70 6.41 -3.71 -0.02 1.68 16 8 C -0.13 -2.44 5.29 -26.59 -0.14 -2.58 16 9 C 0.18 3.20 2.59 -67.87 -0.18 3.03 16 10 N -0.57 -12.82 2.33 -165.59 -0.39 -13.20 16 11 C -0.24 -6.12 7.67 -15.06 -0.12 -6.23 16 12 H 0.05 1.41 6.98 -52.49 -0.37 1.05 16 13 C 0.02 0.57 5.00 -17.43 -0.09 0.48 16 14 N -0.89 -25.26 11.44 55.49 0.63 -24.62 16 15 Si 0.90 22.22 29.59 -169.99 -5.03 17.19 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 19 C 0.14 3.10 5.69 -4.04 -0.02 3.08 16 20 C 0.06 1.12 7.39 37.16 0.27 1.40 16 21 O -0.54 -10.89 13.13 -35.23 -0.46 -11.36 16 22 C -0.14 -2.18 5.34 -26.61 -0.14 -2.32 16 23 C 0.10 1.12 5.54 -3.71 -0.02 1.10 16 24 N -0.36 -4.71 3.16 -57.24 -0.18 -4.90 16 25 C 0.27 3.21 11.58 -90.65 -1.05 2.16 16 26 N -0.55 -7.40 11.19 -15.83 -0.18 -7.57 16 27 C 0.20 2.59 13.03 -91.81 -1.20 1.39 16 28 N -0.31 -4.70 12.70 29.29 0.37 -4.32 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.46 6.38 -51.93 -0.33 0.13 16 31 H 0.07 0.44 7.55 -51.93 -0.39 0.05 16 32 H 0.08 1.39 7.04 -51.93 -0.37 1.02 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.56 7.66 -51.93 -0.40 1.16 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.05 0.78 7.78 -51.93 -0.40 0.37 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.10 2.63 5.55 -51.94 -0.29 2.34 16 39 H 0.04 0.73 7.90 -51.92 -0.41 0.32 16 40 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.35 5.05 9.12 45.56 0.42 5.47 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.27 7.14 -51.93 -0.37 0.90 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.63 4.68 -51.93 -0.24 0.39 16 47 H 0.21 1.65 7.50 -52.49 -0.39 1.26 16 48 H 0.22 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -35.64 383.10 -8.98 -44.62 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.43 Total: 5.60 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: -2.67 Total: 10.87 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.25 Total: -63.14 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.38 Total: -20.91 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.64 -8.98 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264198346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.648 kcal (2) G-P(sol) polarization free energy of solvation -35.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds