Wall clock time and date at job start Tue Mar 31 2020 20:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47347 * 2 1 4 4 C 1.50705 * 109.47104 * 240.00343 * 2 1 3 5 5 O 1.21288 * 119.99877 * 257.07844 * 4 2 1 6 6 N 1.34771 * 119.99955 * 77.08389 * 4 2 1 7 7 C 1.46929 * 120.63082 * 174.37489 * 6 4 2 8 8 C 1.53192 * 108.89180 * 233.51485 * 7 6 4 9 9 C 1.53080 * 109.29236 * 305.57296 * 8 7 6 10 10 N 1.46499 * 109.45122 * 181.24647 * 9 8 7 11 11 C 1.36936 * 120.00026 * 301.81348 * 10 9 8 12 12 H 1.08001 * 119.99769 * 320.68094 * 11 10 9 13 13 C 1.38806 * 120.00395 * 140.68222 * 11 10 9 14 14 N 1.31623 * 119.99914 * 341.07173 * 13 11 10 15 15 Si 1.86799 * 120.00307 * 161.06488 * 13 11 10 16 16 H 1.48506 * 109.46898 * 60.00425 * 15 13 11 17 17 H 1.48497 * 109.47261 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47349 * 300.00504 * 15 13 11 19 19 C 1.46498 * 120.00237 * 121.81238 * 10 9 8 20 20 C 1.53007 * 109.47064 * 89.99491 * 19 10 9 21 21 O 1.42897 * 109.46611 * 65.00542 * 20 19 10 22 22 C 1.53041 * 109.65653 * 61.15456 * 9 8 7 23 23 C 1.46927 * 120.63231 * 354.34359 * 6 4 2 24 24 N 1.46504 * 109.47279 * 120.00007 * 2 1 3 25 25 C 1.34428 * 126.81933 * 34.71501 * 24 2 1 26 26 N 1.30834 * 108.07204 * 179.89150 * 25 24 2 27 27 C 1.33237 * 109.83486 * 0.37800 * 26 25 24 28 28 N 1.30719 * 108.94379 * 359.76495 * 27 26 25 29 29 H 1.09000 * 109.46727 * 293.59345 * 1 2 3 30 30 H 1.08999 * 109.46959 * 53.59481 * 1 2 3 31 31 H 1.09005 * 109.47066 * 173.59552 * 1 2 3 32 32 H 1.09005 * 109.58102 * 353.36779 * 7 6 4 33 33 H 1.08998 * 109.59202 * 113.65036 * 7 6 4 34 34 H 1.08999 * 109.49843 * 65.38415 * 8 7 6 35 35 H 1.09001 * 109.49312 * 185.48363 * 8 7 6 36 36 H 1.08999 * 109.34668 * 301.13375 * 9 8 7 37 37 H 0.96994 * 119.99845 * 179.97438 * 14 13 11 38 38 H 1.08989 * 109.47373 * 209.99891 * 19 10 9 39 39 H 1.09009 * 109.46846 * 329.99916 * 19 10 9 40 40 H 1.08999 * 109.47006 * 185.00033 * 20 19 10 41 41 H 1.08998 * 109.47226 * 305.00486 * 20 19 10 42 42 H 0.96701 * 113.99593 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.49347 * 178.74905 * 22 9 8 44 44 H 1.08996 * 109.52252 * 58.66966 * 22 9 8 45 45 H 1.08995 * 109.58930 * 246.20706 * 23 6 4 46 46 H 1.08999 * 109.58696 * 6.49076 * 23 6 4 47 47 H 1.07997 * 125.96693 * 0.03278 * 25 24 2 48 48 H 1.07996 * 125.53564 * 179.79560 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4559 -1.8437 -1.1460 6 7 2.0110 -0.0862 -2.4248 7 6 2.6088 -0.7166 -3.6098 8 6 3.6078 0.2590 -4.2398 9 6 2.9067 1.5908 -4.5191 10 7 3.8512 2.5167 -5.1490 11 6 5.0152 2.8483 -4.5086 12 1 5.0171 3.0087 -3.4405 13 6 6.1927 2.9784 -5.2320 14 7 6.2933 2.4383 -6.4281 15 14 7.6345 3.9201 -4.5082 16 1 8.0615 3.2741 -3.2410 17 1 8.7638 3.9141 -5.4724 18 1 7.2242 5.3209 -4.2358 19 6 3.5504 3.0878 -6.4641 20 6 2.7797 4.3977 -6.2871 21 8 3.6163 5.3587 -5.6401 22 6 2.4022 2.1924 -3.2054 23 6 1.3889 1.2373 -2.5669 24 7 2.0184 -0.6906 1.1962 25 6 1.4529 -1.7486 1.8029 26 7 2.1931 -2.0691 2.8331 27 6 3.2303 -1.2373 2.9208 28 7 3.1670 -0.3752 1.9403 29 1 -0.3633 0.4113 0.9418 30 1 -0.3633 0.6099 -0.8271 31 1 -0.3633 -1.0213 -0.1146 32 1 3.1259 -1.6301 -3.3159 33 1 1.8267 -0.9552 -4.3306 34 1 4.4378 0.4240 -3.5528 35 1 3.9850 -0.1589 -5.1732 36 1 2.0632 1.4215 -5.1884 37 1 7.1160 2.5295 -6.9337 38 1 4.4809 3.2829 -6.9970 39 1 2.9449 2.3844 -7.0358 40 1 2.4788 4.7770 -7.2637 41 1 1.8937 4.2186 -5.6781 42 1 3.1916 6.2152 -5.4947 43 1 1.9231 3.1510 -3.4046 44 1 3.2417 2.3394 -2.5260 45 1 0.5076 1.1604 -3.2036 46 1 1.0988 1.6119 -1.5852 47 1 0.5472 -2.2483 1.4927 48 1 3.9989 -1.2703 3.6787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264198346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:45 Heat of formation + Delta-G solvation = 18.856839 kcal Electronic energy + Delta-G solvation = -30748.104661 eV Core-core repulsion = 26647.449893 eV Total energy + Delta-G solvation = -4100.654768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.14864 -41.36520 -39.16526 -37.67379 -36.30667 -36.08322 -33.80653 -32.53632 -32.24084 -31.89123 -30.74974 -29.37634 -26.96176 -26.01388 -24.76495 -24.27182 -23.11509 -22.80876 -22.10923 -21.41219 -20.30586 -18.79145 -18.31013 -18.13186 -17.90980 -16.96612 -16.70795 -16.61611 -16.18924 -16.07457 -15.71391 -15.58442 -15.24258 -15.08432 -14.87574 -14.66055 -14.42286 -14.09147 -13.85693 -13.63962 -13.51504 -13.29820 -13.12770 -13.03609 -12.95143 -12.73925 -12.56945 -12.52316 -12.39883 -12.11189 -11.83444 -11.65382 -11.53234 -11.42515 -11.12842 -11.07169 -10.81899 -10.58802 -10.49649 -10.38957 -9.72869 -8.41696 -7.72360 -5.33727 0.56106 1.11221 1.41959 1.43079 1.44713 1.50388 1.93667 2.02366 2.55127 3.16736 3.37513 3.44295 3.45036 3.57537 3.69959 3.88137 3.91961 3.96218 4.11160 4.20950 4.26633 4.33300 4.45174 4.57273 4.62568 4.63199 4.66309 4.71054 4.77438 4.80225 4.90398 4.94216 5.05217 5.09598 5.13209 5.19083 5.22962 5.41240 5.44470 5.60745 5.63580 5.75327 5.80807 5.89395 6.28256 6.56830 6.92285 7.06688 7.25388 7.32479 7.99704 8.47082 9.22384 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003254 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.666745 B = 8604.011354 C = 9362.484752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 H 0.133 0.867 4 C 0.502 3.498 5 O -0.579 6.579 6 N -0.595 5.595 7 C 0.125 3.875 8 C -0.121 4.121 9 C 0.172 3.828 10 N -0.584 5.584 11 C -0.217 4.217 12 H 0.038 0.962 13 C -0.030 4.030 14 N -0.921 5.921 15 Si 0.936 3.064 16 H -0.288 1.288 17 H -0.297 1.297 18 H -0.282 1.282 19 C 0.135 3.865 20 C 0.070 3.930 21 O -0.577 6.577 22 C -0.133 4.133 23 C 0.107 3.893 24 N -0.370 5.370 25 C 0.276 3.724 26 N -0.574 5.574 27 C 0.195 3.805 28 N -0.358 5.358 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.244 0.756 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.373 0.627 43 H 0.081 0.919 44 H 0.033 0.967 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.250 0.750 48 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.274 -1.445 9.366 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.150 0.850 4 C 0.289 3.711 5 O -0.459 6.459 6 N -0.326 5.326 7 C 0.002 3.998 8 C -0.162 4.162 9 C 0.066 3.934 10 N -0.304 5.304 11 C -0.348 4.348 12 H 0.056 0.944 13 C -0.226 4.226 14 N -0.566 5.566 15 Si 0.767 3.233 16 H -0.214 1.214 17 H -0.223 1.223 18 H -0.209 1.209 19 C 0.009 3.991 20 C -0.010 4.010 21 O -0.381 6.381 22 C -0.173 4.173 23 C -0.015 4.015 24 N -0.160 5.160 25 C -0.020 4.020 26 N -0.301 5.301 27 C -0.107 4.107 28 N -0.185 5.185 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.219 0.781 43 H 0.100 0.900 44 H 0.052 0.948 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.266 0.734 48 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -19.043 -2.185 9.279 21.295 hybrid contribution 1.478 0.895 -0.212 1.741 sum -17.565 -1.290 9.067 19.809 Atomic orbital electron populations 1.22334 0.85961 1.06075 1.07051 1.21504 0.99383 0.97060 0.78818 0.84983 1.21064 0.78421 0.86359 0.85271 1.90719 1.48972 1.20194 1.85987 1.48155 1.56487 1.20116 1.07883 1.21560 0.96527 0.95316 0.86375 1.22118 0.97637 0.97292 0.99113 1.20575 0.91560 0.87701 0.93596 1.43864 1.18998 1.48933 1.18564 1.18629 0.85832 1.38764 0.91560 0.94400 1.25532 0.98902 1.00481 0.97657 1.70032 1.26357 1.46192 1.14054 0.85836 0.80296 0.79898 0.77261 1.21436 1.22325 1.20876 1.21004 0.99093 0.91096 0.87877 1.22873 0.92801 0.90729 0.94558 1.86810 1.43558 1.25528 1.82242 1.22230 0.98170 0.99165 0.97694 1.22241 0.95881 0.79784 1.03596 1.50245 1.18570 1.25326 1.21859 1.26589 0.99605 0.87084 0.88741 1.70575 1.07875 1.29329 1.22357 1.26571 0.97638 0.89373 0.97154 1.78043 1.04413 1.26877 1.09193 0.88243 0.86214 0.89709 0.91885 0.88620 0.95620 0.93202 0.90781 0.94673 0.92446 0.92988 0.93969 0.93557 0.78101 0.90030 0.94777 0.87108 0.87232 0.73436 0.74210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.41 71.98 0.61 -0.62 16 2 C 0.14 2.65 2.91 44.25 0.13 2.78 16 3 H 0.13 2.43 7.01 -2.39 -0.02 2.41 16 4 C 0.50 13.39 6.97 87.66 0.61 14.00 16 5 O -0.58 -20.72 15.79 -3.05 -0.05 -20.76 16 6 N -0.59 -14.59 2.97 -818.89 -2.44 -17.03 16 7 C 0.13 3.63 6.41 86.36 0.55 4.19 16 8 C -0.12 -4.56 5.29 30.69 0.16 -4.40 16 9 C 0.17 5.97 2.59 45.03 0.12 6.09 16 10 N -0.58 -26.17 2.33 -677.81 -1.58 -27.75 16 11 C -0.22 -11.50 7.67 84.03 0.64 -10.86 16 12 H 0.04 2.11 6.98 -2.91 -0.02 2.09 16 13 C -0.03 -1.66 5.00 84.86 0.42 -1.24 16 14 N -0.92 -54.09 11.44 21.65 0.25 -53.84 16 15 Si 0.94 47.10 29.59 68.60 2.03 49.13 16 16 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 17 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 18 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 19 C 0.14 5.81 5.69 86.38 0.49 6.30 16 20 C 0.07 2.39 7.39 71.98 0.53 2.93 16 21 O -0.58 -22.27 13.13 -148.98 -1.96 -24.23 16 22 C -0.13 -3.72 5.34 30.67 0.16 -3.55 16 23 C 0.11 1.87 5.54 86.36 0.48 2.35 16 24 N -0.37 -9.06 3.16 -335.01 -1.06 -10.12 16 25 C 0.28 5.98 11.58 180.36 2.09 8.07 16 26 N -0.57 -14.79 11.19 -204.01 -2.28 -17.07 16 27 C 0.20 5.00 13.03 180.76 2.36 7.36 16 28 N -0.36 -10.61 12.70 -61.25 -0.78 -11.38 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.12 0.39 6.38 -2.39 -0.02 0.38 16 31 H 0.08 0.57 7.55 -2.38 -0.02 0.55 16 32 H 0.06 2.12 7.04 -2.38 -0.02 2.10 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.02 1.16 7.66 -2.39 -0.02 1.15 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.20 7.78 -2.39 -0.02 2.18 16 37 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.06 3.04 5.55 -2.39 -0.01 3.03 16 39 H 0.05 2.00 7.90 -2.38 -0.02 1.99 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.37 9.95 9.12 -74.06 -0.68 9.28 16 43 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.03 1.20 7.14 -2.39 -0.02 1.19 16 45 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.11 1.25 4.68 -2.39 -0.01 1.24 16 47 H 0.25 3.06 7.50 -2.91 -0.02 3.04 16 48 H 0.24 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -83.81 383.10 1.80 -82.00 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.31 Total: 17.66 kcal Atomic # 6 Polarization: 24.03 SS G_CDS: 9.36 Total: 33.39 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -7.89 Total: -137.19 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -2.00 Total: -44.99 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -83.81 1.80 -82.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264198346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.858 kcal (2) G-P(sol) polarization free energy of solvation -83.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds