Wall clock time and date at job start Tue Mar 31 2020 20:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47088 * 2 1 4 4 C 1.50700 * 109.47533 * 120.00160 * 2 1 3 5 5 O 1.21285 * 119.99711 * 95.23473 * 4 2 1 6 6 N 1.34773 * 120.00039 * 275.23366 * 4 2 1 7 7 C 1.46930 * 120.63108 * 4.19281 * 6 4 2 8 8 C 1.52758 * 109.00463 * 233.58085 * 7 6 4 9 9 C 1.53036 * 109.38310 * 305.58318 * 8 7 6 10 10 N 1.46499 * 109.44977 * 181.25397 * 9 8 7 11 11 C 1.36936 * 120.00378 * 300.56876 * 10 9 8 12 12 H 1.07998 * 119.99883 * 325.31092 * 11 10 9 13 13 C 1.38812 * 119.99920 * 145.30122 * 11 10 9 14 14 N 1.31624 * 119.99631 * 156.97352 * 13 11 10 15 15 Si 1.86797 * 120.00212 * 336.97458 * 13 11 10 16 16 H 1.48504 * 109.47222 * 95.13042 * 15 13 11 17 17 H 1.48501 * 109.46778 * 215.12816 * 15 13 11 18 18 H 1.48494 * 109.47378 * 335.12572 * 15 13 11 19 19 C 1.46504 * 119.99984 * 120.57251 * 10 9 8 20 20 C 1.52994 * 109.47447 * 90.00066 * 19 10 9 21 21 O 1.42900 * 109.47178 * 65.00124 * 20 19 10 22 22 C 1.53043 * 109.53991 * 61.24488 * 9 8 7 23 23 C 1.46923 * 120.63015 * 184.46326 * 6 4 2 24 24 N 1.46503 * 109.47092 * 240.00568 * 2 1 3 25 25 C 1.34426 * 126.82373 * 324.99493 * 24 2 1 26 26 N 1.30824 * 108.08143 * 179.73862 * 25 24 2 27 27 C 1.33243 * 109.82665 * 0.02562 * 26 25 24 28 28 N 1.30708 * 108.94760 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47467 * 59.55380 * 1 2 3 30 30 H 1.08994 * 109.47271 * 179.55856 * 1 2 3 31 31 H 1.09004 * 109.46977 * 299.55713 * 1 2 3 32 32 H 1.09002 * 109.58295 * 353.40998 * 7 6 4 33 33 H 1.09000 * 109.58739 * 113.83736 * 7 6 4 34 34 H 1.09002 * 109.56584 * 185.55125 * 8 7 6 35 35 H 1.08998 * 109.36594 * 65.49936 * 8 7 6 36 36 H 1.08999 * 109.46608 * 301.22373 * 9 8 7 37 37 H 0.96999 * 119.99871 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.46994 * 210.00457 * 19 10 9 39 39 H 1.09003 * 109.46733 * 329.99956 * 19 10 9 40 40 H 1.08996 * 109.47388 * 185.00041 * 20 19 10 41 41 H 1.09001 * 109.47075 * 304.99870 * 20 19 10 42 42 H 0.96704 * 113.99854 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.50211 * 178.68347 * 22 9 8 44 44 H 1.09003 * 109.50005 * 58.57899 * 22 9 8 45 45 H 1.09002 * 109.58622 * 246.15864 * 23 6 4 46 46 H 1.09002 * 109.58651 * 6.44210 * 23 6 4 47 47 H 1.08010 * 125.95782 * 359.70630 * 25 24 2 48 48 H 1.08004 * 125.52159 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3249 -1.8862 1.1748 6 7 2.1567 -0.0393 2.3925 7 6 1.7206 1.3598 2.4994 8 6 2.8757 2.2009 3.0397 9 6 3.3736 1.5953 4.3540 10 7 4.4616 2.4178 4.8888 11 6 5.5987 2.6129 4.1512 12 1 5.9742 1.8224 3.5184 13 6 6.2686 3.8270 4.2166 14 7 7.5458 3.8914 3.9051 15 14 5.3575 5.3691 4.7468 16 1 5.5581 5.5870 6.2020 17 1 5.8820 6.5371 3.9945 18 1 3.9083 5.2093 4.4653 19 6 4.3331 3.0315 6.2128 20 6 4.8788 2.0740 7.2740 21 8 6.2824 1.8931 7.0758 22 6 3.8849 0.1750 4.1018 23 6 2.7362 -0.6909 3.5750 24 7 2.0183 -0.6905 -1.1963 25 6 1.4558 -1.7517 -1.8000 26 7 2.1903 -2.0659 -2.8360 27 6 3.2258 -1.2322 -2.9254 28 7 3.1645 -0.3724 -1.9428 29 1 -0.3634 0.5207 -0.8860 30 1 -0.3633 -1.0276 -0.0079 31 1 -0.3633 0.5070 0.8940 32 1 1.4311 1.7284 1.5153 33 1 0.8729 1.4272 3.1812 34 1 2.5334 3.2207 3.2157 35 1 3.6875 2.2096 2.3125 36 1 2.5549 1.5641 5.0728 37 1 8.0140 4.7396 3.9511 38 1 4.8991 3.9627 6.2381 39 1 3.2826 3.2392 6.4166 40 1 4.7027 2.4916 8.2653 41 1 4.3730 1.1121 7.1899 42 1 6.6960 1.2961 7.7143 43 1 4.2610 -0.2472 5.0337 44 1 4.6872 0.2027 3.3645 45 1 1.9729 -0.7940 4.3463 46 1 3.1141 -1.6759 3.3010 47 1 0.5550 -2.2572 -1.4845 48 1 3.9916 -1.2620 -3.6865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264198347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:48 Heat of formation + Delta-G solvation = 54.639677 kcal Electronic energy + Delta-G solvation = -30815.909438 eV Core-core repulsion = 26716.806330 eV Total energy + Delta-G solvation = -4099.103107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20910 -40.30815 -37.96537 -36.40277 -35.25970 -34.79074 -32.15277 -31.46553 -31.13065 -30.87899 -29.93213 -27.99275 -25.91555 -24.80566 -23.35207 -23.04179 -22.17974 -21.88488 -21.03777 -20.04409 -19.10750 -17.70145 -17.36318 -16.75307 -16.37804 -15.91553 -15.55731 -15.34829 -15.18266 -14.84725 -14.76825 -14.35444 -14.09265 -13.73654 -13.68009 -13.42214 -13.15838 -13.04823 -12.79591 -12.63860 -12.55974 -12.43169 -12.07057 -11.98074 -11.76072 -11.66447 -11.13524 -10.93172 -10.79039 -10.59755 -10.50749 -10.36169 -10.08366 -10.02374 -9.80978 -9.69021 -9.55807 -9.45897 -9.12043 -8.68661 -8.39530 -6.86750 -5.87914 -3.26801 1.50594 1.96702 2.44473 2.90477 2.97739 3.32515 3.44958 3.49075 4.05097 4.18954 4.24510 4.41627 4.57286 4.69575 4.71467 4.88848 5.00222 5.03099 5.06116 5.19261 5.24199 5.30044 5.41454 5.43045 5.50772 5.59677 5.71236 5.78613 5.85347 5.90283 6.00576 6.06603 6.08113 6.12599 6.28269 6.30337 6.37155 6.43127 6.62995 6.67521 6.67678 6.89447 6.93319 7.27367 7.94282 8.02544 8.08111 8.41689 8.48729 9.02021 9.81057 10.14069 11.28470 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015870 B = 0.003250 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.872987 B = 8614.044107 C = 9162.603760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 H 0.131 0.869 4 C 0.508 3.492 5 O -0.534 6.534 6 N -0.596 5.596 7 C 0.102 3.898 8 C -0.145 4.145 9 C 0.181 3.819 10 N -0.593 5.593 11 C -0.248 4.248 12 H 0.076 0.924 13 C 0.043 3.957 14 N -0.897 5.897 15 Si 0.873 3.127 16 H -0.289 1.289 17 H -0.305 1.305 18 H -0.273 1.273 19 C 0.132 3.868 20 C 0.062 3.938 21 O -0.533 6.533 22 C -0.139 4.139 23 C 0.115 3.885 24 N -0.364 5.364 25 C 0.273 3.727 26 N -0.549 5.549 27 C 0.198 3.802 28 N -0.312 5.312 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.021 0.979 41 H 0.031 0.969 42 H 0.353 0.647 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.214 0.786 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.743 -6.671 -2.654 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.148 0.852 4 C 0.293 3.707 5 O -0.410 6.410 6 N -0.329 5.329 7 C -0.021 4.021 8 C -0.184 4.184 9 C 0.074 3.926 10 N -0.314 5.314 11 C -0.376 4.376 12 H 0.094 0.906 13 C -0.157 4.157 14 N -0.538 5.538 15 Si 0.705 3.295 16 H -0.218 1.218 17 H -0.234 1.234 18 H -0.198 1.198 19 C 0.006 3.994 20 C -0.019 4.019 21 O -0.334 6.334 22 C -0.179 4.179 23 C -0.007 4.007 24 N -0.154 5.154 25 C -0.024 4.024 26 N -0.277 5.277 27 C -0.105 4.105 28 N -0.138 5.138 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.196 0.804 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.230 0.770 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -17.093 -6.410 -3.257 18.544 hybrid contribution -0.311 0.654 1.157 1.365 sum -17.404 -5.756 -2.101 18.451 Atomic orbital electron populations 1.22154 0.90003 1.04577 1.05077 1.21290 0.96532 0.98131 0.81150 0.85172 1.20424 0.78713 0.87320 0.84272 1.90731 1.50213 1.15625 1.84425 1.48094 1.60819 1.13258 1.10694 1.21939 0.98292 0.80228 1.01617 1.22316 0.97227 0.98531 1.00375 1.20285 0.89699 0.89992 0.92630 1.44090 1.16025 1.58233 1.13012 1.18472 0.98997 0.97012 1.23146 0.90638 1.25255 0.95314 0.97287 0.97805 1.69887 1.07506 1.25430 1.50974 0.87027 0.80898 0.84783 0.76796 1.21757 1.23387 1.19834 1.21355 0.97055 0.95801 0.85206 1.22878 0.83295 0.98680 0.97027 1.86965 1.20604 1.69041 1.56813 1.22360 0.97318 0.96485 1.01750 1.21743 0.95990 0.97395 0.85576 1.50117 1.19249 1.24543 1.21527 1.25852 0.99142 0.87844 0.89588 1.70566 1.07432 1.28766 1.20907 1.26015 0.97226 0.90097 0.97130 1.78158 1.02623 1.25169 1.07879 0.89905 0.90598 0.88849 0.90457 0.91005 0.90882 0.90131 0.93047 0.93054 0.92089 0.93062 0.96065 0.95093 0.80392 0.91100 0.90793 0.91736 0.89589 0.76998 0.76621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 8.66 37.15 0.32 -0.68 16 2 C 0.14 1.47 2.90 -69.08 -0.20 1.27 16 3 H 0.13 1.36 6.46 -51.93 -0.34 1.03 16 4 C 0.51 6.98 6.91 -10.99 -0.08 6.91 16 5 O -0.53 -9.25 15.81 5.55 0.09 -9.16 16 6 N -0.60 -7.68 2.98 -173.03 -0.52 -8.19 16 7 C 0.10 1.11 5.81 -3.93 -0.02 1.09 16 8 C -0.14 -2.24 5.28 -26.84 -0.14 -2.38 16 9 C 0.18 3.08 2.59 -67.89 -0.18 2.90 16 10 N -0.59 -12.78 2.05 -165.62 -0.34 -13.12 16 11 C -0.25 -6.58 8.21 -15.06 -0.12 -6.70 16 12 H 0.08 2.24 7.03 -52.49 -0.37 1.88 16 13 C 0.04 1.23 5.31 -17.43 -0.09 1.14 16 14 N -0.90 -27.56 13.97 55.49 0.78 -26.78 16 15 Si 0.87 21.78 24.97 -169.99 -4.24 17.54 16 16 H -0.29 -7.17 6.65 56.52 0.38 -6.79 16 17 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.13 2.67 4.91 -4.04 -0.02 2.65 16 20 C 0.06 1.11 7.39 37.15 0.27 1.39 16 21 O -0.53 -11.13 13.13 -35.23 -0.46 -11.59 16 22 C -0.14 -2.31 5.31 -26.61 -0.14 -2.45 16 23 C 0.12 1.58 6.42 -3.71 -0.02 1.55 16 24 N -0.36 -4.76 3.24 -57.24 -0.19 -4.94 16 25 C 0.27 3.24 11.49 -90.66 -1.04 2.20 16 26 N -0.55 -7.45 11.19 -15.83 -0.18 -7.63 16 27 C 0.20 2.63 13.03 -91.82 -1.20 1.43 16 28 N -0.31 -4.74 12.70 29.29 0.37 -4.37 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.43 7.20 -51.93 -0.37 0.06 16 31 H 0.09 0.44 7.39 -51.93 -0.38 0.06 16 32 H 0.08 0.67 5.12 -51.93 -0.27 0.40 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.51 7.69 -51.93 -0.40 1.11 16 36 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.06 1.43 2.92 -51.93 -0.15 1.27 16 39 H 0.05 0.88 7.91 -51.93 -0.41 0.46 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.35 5.41 9.12 45.56 0.42 5.83 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.50 7.06 -51.93 -0.37 1.13 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.30 7.03 -51.93 -0.37 0.93 16 47 H 0.21 1.67 7.31 -52.48 -0.38 1.28 16 48 H 0.22 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -37.76 378.54 -7.98 -45.75 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.34 Total: 6.48 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -2.66 Total: 10.31 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -0.07 Total: -65.03 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.37 Total: -20.75 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.24 Total: 17.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.76 -7.98 -45.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264198347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.386 kcal (2) G-P(sol) polarization free energy of solvation -37.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds