Wall clock time and date at job start Tue Mar 31 2020 20:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47088 * 2 1 4 4 C 1.50700 * 109.47533 * 120.00160 * 2 1 3 5 5 O 1.21285 * 119.99711 * 95.23473 * 4 2 1 6 6 N 1.34773 * 120.00039 * 275.23366 * 4 2 1 7 7 C 1.46930 * 120.63108 * 4.19281 * 6 4 2 8 8 C 1.52758 * 109.00463 * 233.58085 * 7 6 4 9 9 C 1.53036 * 109.38310 * 305.58318 * 8 7 6 10 10 N 1.46499 * 109.44977 * 181.25397 * 9 8 7 11 11 C 1.36936 * 120.00378 * 300.56876 * 10 9 8 12 12 H 1.07998 * 119.99883 * 325.31092 * 11 10 9 13 13 C 1.38812 * 119.99920 * 145.30122 * 11 10 9 14 14 N 1.31624 * 119.99631 * 156.97352 * 13 11 10 15 15 Si 1.86797 * 120.00212 * 336.97458 * 13 11 10 16 16 H 1.48504 * 109.47222 * 95.13042 * 15 13 11 17 17 H 1.48501 * 109.46778 * 215.12816 * 15 13 11 18 18 H 1.48494 * 109.47378 * 335.12572 * 15 13 11 19 19 C 1.46504 * 119.99984 * 120.57251 * 10 9 8 20 20 C 1.52994 * 109.47447 * 90.00066 * 19 10 9 21 21 O 1.42900 * 109.47178 * 65.00124 * 20 19 10 22 22 C 1.53043 * 109.53991 * 61.24488 * 9 8 7 23 23 C 1.46923 * 120.63015 * 184.46326 * 6 4 2 24 24 N 1.46503 * 109.47092 * 240.00568 * 2 1 3 25 25 C 1.34426 * 126.82373 * 324.99493 * 24 2 1 26 26 N 1.30824 * 108.08143 * 179.73862 * 25 24 2 27 27 C 1.33243 * 109.82665 * 0.02562 * 26 25 24 28 28 N 1.30708 * 108.94760 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47467 * 59.55380 * 1 2 3 30 30 H 1.08994 * 109.47271 * 179.55856 * 1 2 3 31 31 H 1.09004 * 109.46977 * 299.55713 * 1 2 3 32 32 H 1.09002 * 109.58295 * 353.40998 * 7 6 4 33 33 H 1.09000 * 109.58739 * 113.83736 * 7 6 4 34 34 H 1.09002 * 109.56584 * 185.55125 * 8 7 6 35 35 H 1.08998 * 109.36594 * 65.49936 * 8 7 6 36 36 H 1.08999 * 109.46608 * 301.22373 * 9 8 7 37 37 H 0.96999 * 119.99871 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.46994 * 210.00457 * 19 10 9 39 39 H 1.09003 * 109.46733 * 329.99956 * 19 10 9 40 40 H 1.08996 * 109.47388 * 185.00041 * 20 19 10 41 41 H 1.09001 * 109.47075 * 304.99870 * 20 19 10 42 42 H 0.96704 * 113.99854 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.50211 * 178.68347 * 22 9 8 44 44 H 1.09003 * 109.50005 * 58.57899 * 22 9 8 45 45 H 1.09002 * 109.58622 * 246.15864 * 23 6 4 46 46 H 1.09002 * 109.58651 * 6.44210 * 23 6 4 47 47 H 1.08010 * 125.95782 * 359.70630 * 25 24 2 48 48 H 1.08004 * 125.52159 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3249 -1.8862 1.1748 6 7 2.1567 -0.0393 2.3925 7 6 1.7206 1.3598 2.4994 8 6 2.8757 2.2009 3.0397 9 6 3.3736 1.5953 4.3540 10 7 4.4616 2.4178 4.8888 11 6 5.5987 2.6129 4.1512 12 1 5.9742 1.8224 3.5184 13 6 6.2686 3.8270 4.2166 14 7 7.5458 3.8914 3.9051 15 14 5.3575 5.3691 4.7468 16 1 5.5581 5.5870 6.2020 17 1 5.8820 6.5371 3.9945 18 1 3.9083 5.2093 4.4653 19 6 4.3331 3.0315 6.2128 20 6 4.8788 2.0740 7.2740 21 8 6.2824 1.8931 7.0758 22 6 3.8849 0.1750 4.1018 23 6 2.7362 -0.6909 3.5750 24 7 2.0183 -0.6905 -1.1963 25 6 1.4558 -1.7517 -1.8000 26 7 2.1903 -2.0659 -2.8360 27 6 3.2258 -1.2322 -2.9254 28 7 3.1645 -0.3724 -1.9428 29 1 -0.3634 0.5207 -0.8860 30 1 -0.3633 -1.0276 -0.0079 31 1 -0.3633 0.5070 0.8940 32 1 1.4311 1.7284 1.5153 33 1 0.8729 1.4272 3.1812 34 1 2.5334 3.2207 3.2157 35 1 3.6875 2.2096 2.3125 36 1 2.5549 1.5641 5.0728 37 1 8.0140 4.7396 3.9511 38 1 4.8991 3.9627 6.2381 39 1 3.2826 3.2392 6.4166 40 1 4.7027 2.4916 8.2653 41 1 4.3730 1.1121 7.1899 42 1 6.6960 1.2961 7.7143 43 1 4.2610 -0.2472 5.0337 44 1 4.6872 0.2027 3.3645 45 1 1.9729 -0.7940 4.3463 46 1 3.1141 -1.6759 3.3010 47 1 0.5550 -2.2572 -1.4845 48 1 3.9916 -1.2620 -3.6865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264198347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:47 Heat of formation + Delta-G solvation = 25.713282 kcal Electronic energy + Delta-G solvation = -30817.163780 eV Core-core repulsion = 26716.806330 eV Total energy + Delta-G solvation = -4100.357450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.16325 -41.38908 -39.34401 -37.80846 -36.36280 -36.11456 -33.90750 -32.72877 -32.37122 -32.10599 -30.80861 -29.58460 -27.05997 -26.04084 -24.75005 -24.24362 -23.34432 -22.89066 -22.37442 -21.36770 -20.27888 -18.82879 -18.37109 -18.30600 -18.02811 -17.17152 -16.92551 -16.56193 -16.41796 -16.13172 -15.79908 -15.41594 -15.27322 -15.12127 -14.88075 -14.70131 -14.52753 -14.33737 -14.19590 -13.72136 -13.49945 -13.44050 -13.32804 -13.28685 -13.08641 -12.79791 -12.54139 -12.50862 -12.24417 -12.13040 -11.86099 -11.73665 -11.53061 -11.31864 -11.21016 -11.08438 -10.83717 -10.66617 -10.49916 -10.45311 -9.74362 -8.70223 -8.04785 -5.38115 0.54801 1.06301 1.33373 1.42166 1.47421 1.52884 1.92193 2.00842 2.52039 3.08297 3.17389 3.36981 3.43201 3.44040 3.67722 3.75127 3.90533 3.93958 4.06698 4.17177 4.25027 4.25656 4.40353 4.45314 4.53417 4.58427 4.61487 4.64644 4.67710 4.72321 4.77007 4.79934 4.88373 5.02117 5.03757 5.07834 5.16001 5.20968 5.39206 5.42664 5.54066 5.57824 5.80223 6.05650 6.24547 6.29333 6.90545 7.05525 7.08732 7.20312 7.79545 8.14159 9.16994 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015870 B = 0.003250 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.872987 B = 8614.044107 C = 9162.603760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.131 0.869 4 C 0.503 3.497 5 O -0.576 6.576 6 N -0.596 5.596 7 C 0.108 3.892 8 C -0.141 4.141 9 C 0.175 3.825 10 N -0.603 5.603 11 C -0.211 4.211 12 H 0.022 0.978 13 C -0.025 4.025 14 N -0.960 5.960 15 Si 0.944 3.056 16 H -0.286 1.286 17 H -0.323 1.323 18 H -0.241 1.241 19 C 0.118 3.882 20 C 0.060 3.940 21 O -0.578 6.578 22 C -0.128 4.128 23 C 0.125 3.875 24 N -0.371 5.371 25 C 0.277 3.723 26 N -0.573 5.573 27 C 0.195 3.805 28 N -0.360 5.360 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.097 0.903 37 H 0.253 0.747 38 H 0.030 0.970 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.374 0.626 43 H 0.066 0.934 44 H 0.017 0.983 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.250 0.750 48 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.946 -6.462 -1.140 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 H 0.148 0.852 4 C 0.290 3.710 5 O -0.456 6.456 6 N -0.328 5.328 7 C -0.014 4.014 8 C -0.181 4.181 9 C 0.069 3.931 10 N -0.325 5.325 11 C -0.341 4.341 12 H 0.039 0.961 13 C -0.220 4.220 14 N -0.606 5.606 15 Si 0.775 3.225 16 H -0.214 1.214 17 H -0.253 1.253 18 H -0.164 1.164 19 C -0.007 4.007 20 C -0.019 4.019 21 O -0.383 6.383 22 C -0.168 4.168 23 C 0.002 3.998 24 N -0.162 5.162 25 C -0.019 4.019 26 N -0.301 5.301 27 C -0.107 4.107 28 N -0.187 5.187 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.115 0.885 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.220 0.780 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.123 0.877 46 H 0.084 0.916 47 H 0.266 0.734 48 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -22.375 -6.205 -1.701 23.282 hybrid contribution 1.353 0.417 0.729 1.593 sum -21.022 -5.788 -0.971 21.826 Atomic orbital electron populations 1.22260 0.85892 1.05858 1.07068 1.21573 0.99483 0.97090 0.78935 0.85173 1.21002 0.77931 0.86988 0.85098 1.90709 1.52146 1.17661 1.85083 1.48197 1.60248 1.14054 1.10315 1.22113 0.97214 0.77897 1.04139 1.22209 0.97572 0.99921 0.98370 1.20601 0.89408 0.88665 0.94420 1.44200 1.15802 1.58726 1.13731 1.18143 0.99872 0.94909 1.21183 0.96053 1.25899 0.95770 1.00676 0.99615 1.70066 1.09678 1.25620 1.55257 0.85878 0.80938 0.79705 0.76016 1.21447 1.25346 1.16440 1.21596 0.99425 0.94858 0.84803 1.22929 0.81848 0.99335 0.97814 1.86897 1.22763 1.70094 1.58546 1.22188 0.97041 0.97616 0.99966 1.21602 0.95795 0.95561 0.86852 1.50280 1.18781 1.25142 1.21963 1.26592 0.99567 0.87090 0.88652 1.70584 1.08018 1.29378 1.22108 1.26575 0.97596 0.89422 0.97127 1.78077 1.04494 1.26905 1.09215 0.88340 0.89712 0.86348 0.87823 0.86398 0.90228 0.95015 0.88538 0.93813 0.95190 0.88472 0.92777 0.93082 0.78000 0.91584 0.96369 0.87677 0.91632 0.73381 0.74260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.66 71.98 0.62 -0.63 16 2 C 0.14 2.64 2.90 44.24 0.13 2.77 16 3 H 0.13 2.49 6.46 -2.38 -0.02 2.48 16 4 C 0.50 13.09 6.91 87.66 0.61 13.70 16 5 O -0.58 -19.78 15.81 -3.05 -0.05 -19.83 16 6 N -0.60 -13.92 2.98 -819.72 -2.44 -16.36 16 7 C 0.11 1.89 5.81 86.22 0.50 2.39 16 8 C -0.14 -4.05 5.28 30.53 0.16 -3.89 16 9 C 0.17 5.50 2.59 45.02 0.12 5.62 16 10 N -0.60 -25.33 2.05 -677.89 -1.39 -26.72 16 11 C -0.21 -11.66 8.21 84.03 0.69 -10.97 16 12 H 0.02 1.40 7.03 -2.91 -0.02 1.38 16 13 C -0.03 -1.49 5.31 84.86 0.45 -1.04 16 14 N -0.96 -62.71 13.97 21.65 0.30 -62.40 16 15 Si 0.94 45.95 24.97 68.60 1.71 47.66 16 16 H -0.29 -13.63 6.65 99.48 0.66 -12.97 16 17 H -0.32 -16.49 7.11 99.48 0.71 -15.79 16 18 H -0.24 -10.27 7.11 99.48 0.71 -9.56 16 19 C 0.12 4.41 4.91 86.38 0.42 4.83 16 20 C 0.06 1.99 7.39 71.98 0.53 2.52 16 21 O -0.58 -23.95 13.13 -148.98 -1.96 -25.90 16 22 C -0.13 -4.23 5.31 30.67 0.16 -4.07 16 23 C 0.12 3.17 6.42 86.36 0.55 3.72 16 24 N -0.37 -9.37 3.24 -335.02 -1.09 -10.46 16 25 C 0.28 6.18 11.49 180.36 2.07 8.25 16 26 N -0.57 -15.19 11.19 -204.00 -2.28 -17.47 16 27 C 0.20 5.22 13.03 180.77 2.36 7.58 16 28 N -0.36 -11.12 12.70 -61.24 -0.78 -11.89 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.59 7.20 -2.39 -0.02 0.57 16 31 H 0.12 0.42 7.39 -2.38 -0.02 0.40 16 32 H 0.10 1.33 5.12 -2.39 -0.01 1.31 16 33 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.03 1.21 7.69 -2.39 -0.02 1.19 16 36 H 0.10 2.27 7.79 -2.39 -0.02 2.25 16 37 H 0.25 15.88 8.31 -92.71 -0.77 15.11 16 38 H 0.03 1.33 2.92 -2.39 -0.01 1.33 16 39 H 0.10 2.74 7.91 -2.39 -0.02 2.72 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.37 11.32 9.12 -74.05 -0.68 10.64 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.02 0.77 7.06 -2.39 -0.02 0.76 16 45 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.07 1.97 7.03 -2.39 -0.02 1.95 16 47 H 0.25 3.21 7.31 -2.91 -0.02 3.19 16 48 H 0.24 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -91.94 378.54 1.68 -90.26 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.27 Total: 22.34 kcal Atomic # 6 Polarization: 21.40 SS G_CDS: 9.38 Total: 30.78 kcal Atomic # 7 Polarization: -137.63 SS G_CDS: -7.68 Total: -145.30 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -2.00 Total: -45.74 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.71 Total: 47.66 kcal Total: -91.94 1.68 -90.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264198347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.968 kcal (2) G-P(sol) polarization free energy of solvation -91.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds