Wall clock time and date at job start Tue Mar 31 2020 20:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46698 * 2 1 4 4 C 1.34258 * 125.75178 * 125.00444 * 3 2 1 5 5 C 1.38042 * 107.41914 * 180.02562 * 4 3 2 6 6 C 1.47425 * 126.41775 * 179.97438 * 5 4 3 7 7 O 1.21603 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99743 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72398 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 8 12 12 N 1.46904 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.46900 * 110.99842 * 66.04719 * 12 11 10 14 14 C 1.46899 * 111.00128 * 190.00269 * 12 11 10 15 15 C 1.50703 * 109.47046 * 170.00323 * 14 12 11 16 16 O 1.21292 * 120.00219 * 359.97438 * 15 14 12 17 17 N 1.34779 * 120.00089 * 180.02562 * 15 14 12 18 18 C 1.37089 * 120.00260 * 179.97438 * 17 15 14 19 19 H 1.08008 * 120.00029 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00404 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99756 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47311 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46985 * 120.00578 * 22 20 18 25 25 H 1.48496 * 109.46954 * 239.99699 * 22 20 18 26 26 C 1.41291 * 107.16396 * 0.23821 * 5 4 3 27 27 N 1.30442 * 108.02749 * 359.59410 * 26 5 4 28 28 H 1.09007 * 109.47226 * 299.99666 * 1 2 3 29 29 H 1.08994 * 109.47327 * 60.00096 * 1 2 3 30 30 H 1.09003 * 109.46621 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47307 * 239.99954 * 2 1 3 32 32 H 1.09004 * 109.47432 * 119.99802 * 2 1 3 33 33 H 1.07999 * 126.29316 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 35 35 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 36 36 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 37 37 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 38 38 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 39 39 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 40 40 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 41 41 H 1.08999 * 109.47291 * 60.00141 * 13 12 11 42 42 H 1.09003 * 109.47182 * 180.02562 * 13 12 11 43 43 H 1.08997 * 109.47165 * 299.99892 * 13 12 11 44 44 H 1.08998 * 109.47091 * 289.99713 * 14 12 11 45 45 H 1.08996 * 109.47059 * 50.00124 * 14 12 11 46 46 H 0.97003 * 119.99243 * 359.97438 * 17 15 14 47 47 H 0.96997 * 120.00472 * 179.97438 * 21 20 18 48 48 H 1.08008 * 125.98679 * 179.74239 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8690 1.9126 0.8925 5 6 3.0704 3.2312 0.5372 6 6 3.9312 4.2039 1.2345 7 8 4.5486 3.8677 2.2268 8 7 4.0339 5.4657 0.7723 9 6 4.8846 6.4339 1.4688 10 6 4.8187 7.7820 0.7481 11 6 5.7066 8.7933 1.4759 12 7 5.6438 10.0875 0.7836 13 6 4.2989 10.6708 0.8791 14 6 6.6576 11.0135 1.3056 15 6 6.7307 12.2301 0.4191 16 8 6.0095 12.3169 -0.5522 17 7 7.5981 13.2212 0.7051 18 6 7.6650 14.3276 -0.1016 19 1 7.0222 14.4053 -0.9661 20 6 8.5589 15.3496 0.1936 21 7 9.3406 15.2554 1.2456 22 14 8.6494 16.8575 -0.9053 23 1 7.6722 16.7209 -2.0149 24 1 8.3282 18.0697 -0.1098 25 1 10.0197 16.9812 -1.4642 26 6 2.2922 3.4757 -0.6165 27 7 1.6762 2.3695 -0.9298 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.3140 1.4022 1.7338 34 1 3.5411 5.7341 -0.0190 35 1 4.5353 6.5529 2.4945 36 1 5.9138 6.0752 1.4748 37 1 5.1679 7.6631 -0.2775 38 1 3.7894 8.1409 0.7422 39 1 5.3569 8.9121 2.5014 40 1 6.7360 8.4347 1.4822 41 1 4.0423 10.8225 1.9275 42 1 4.2802 11.6280 0.3580 43 1 3.5763 9.9947 0.4223 44 1 6.3865 11.3167 2.3169 45 1 7.6281 10.5177 1.3228 46 1 8.1751 13.1515 1.4817 47 1 9.9649 15.9686 1.4514 48 1 2.2217 4.4137 -1.1474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264971605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:11 Heat of formation + Delta-G solvation = 6.029939 kcal Electronic energy + Delta-G solvation = -27334.770354 eV Core-core repulsion = 23233.559370 eV Total energy + Delta-G solvation = -4101.210984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79288 -39.42622 -38.62243 -36.87944 -35.16864 -35.01712 -33.83070 -31.76382 -31.20023 -31.00537 -29.93075 -27.82631 -26.50127 -24.92219 -24.37208 -23.33041 -22.28393 -21.13704 -20.97802 -20.06459 -19.12176 -18.27392 -17.80390 -16.47406 -16.31570 -16.18876 -15.94210 -15.75007 -15.14794 -15.04233 -14.78982 -14.62047 -14.41695 -14.18389 -13.96368 -13.58573 -13.38306 -13.32425 -13.23663 -13.00216 -12.71716 -12.26950 -12.10983 -12.08087 -11.83206 -11.65517 -11.46805 -11.36529 -11.23212 -11.20110 -10.90510 -10.67488 -10.32500 -10.20368 -10.07810 -10.05809 -9.46386 -9.34127 -9.00308 -8.42209 -7.95169 -7.82002 -6.39474 -3.80114 1.14577 1.79372 1.84288 3.03505 3.17908 3.23531 3.28419 3.35607 3.86072 3.93502 4.03361 4.26863 4.27331 4.31051 4.40664 4.55590 4.72250 4.87673 4.90076 4.98581 5.01734 5.09941 5.12865 5.17972 5.27824 5.32454 5.46919 5.49516 5.58032 5.64254 5.74727 5.77712 5.96525 5.97450 6.01878 6.05575 6.14200 6.28771 6.31796 6.34834 6.58900 7.08263 7.29980 7.35491 7.43204 7.57629 8.08728 8.09312 8.64661 9.20799 9.57425 10.09387 10.78422 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037973 B = 0.001370 C = 0.001341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.183830 B =20425.887857 C =20869.885811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.295 4.295 6 C 0.595 3.405 7 O -0.553 6.553 8 N -0.725 5.725 9 C 0.123 3.877 10 C -0.128 4.128 11 C 0.058 3.942 12 N -0.519 5.519 13 C 0.020 3.980 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.081 3.919 27 N -0.294 5.294 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.188 0.812 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.013 0.987 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.491 -29.477 1.702 32.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.024 4.024 5 C -0.310 4.310 6 C 0.382 3.618 7 O -0.432 6.432 8 N -0.376 5.376 9 C -0.001 4.001 10 C -0.166 4.166 11 C -0.071 4.071 12 N -0.243 5.243 13 C -0.128 4.128 14 C -0.086 4.086 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.107 4.107 27 N -0.114 5.114 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.205 0.795 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.032 0.968 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.147 -30.309 0.500 33.886 hybrid contribution 0.699 1.412 1.092 1.917 sum -14.447 -28.897 1.592 32.346 Atomic orbital electron populations 1.22064 0.93292 1.03219 1.03839 1.21858 0.96526 0.76771 1.04385 1.48677 1.34258 1.10680 1.20410 1.23004 0.91454 0.93622 0.94315 1.20262 1.11633 0.95454 1.03612 1.17212 0.80205 0.81248 0.83115 1.90777 1.47101 1.78876 1.26401 1.45751 1.49313 1.10641 1.31874 1.21325 0.94955 0.87684 0.96153 1.21780 1.01140 0.92833 1.00836 1.22006 1.00168 0.89913 0.95018 1.61548 1.04849 1.02319 1.55560 1.22574 0.88994 1.02376 0.98815 1.21863 0.96403 0.93930 0.96367 1.19756 0.84517 0.84740 0.88008 1.90479 1.45121 1.80262 1.30339 1.41875 1.34655 1.16879 1.26771 1.19749 1.20005 0.94808 1.08187 0.87869 1.25249 0.96060 0.99495 0.97137 1.69617 1.23632 1.34554 1.26565 0.85813 0.78143 0.80695 0.79769 1.19223 1.20818 1.20772 1.24105 0.94044 0.97516 0.94997 1.77154 1.23869 0.97024 1.13363 0.91913 0.90863 0.90372 0.89177 0.88146 0.79529 0.76567 0.91495 0.91211 0.90126 0.91096 0.94882 0.90583 0.96820 0.88673 0.92084 0.93470 0.89365 0.77499 0.91957 0.79281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.09 37.16 0.37 -0.18 16 2 C 0.13 0.43 7.21 -4.04 -0.03 0.40 16 3 N -0.36 -2.54 3.65 -60.81 -0.22 -2.76 16 4 C 0.13 0.97 11.25 -16.56 -0.19 0.78 16 5 C -0.29 -2.66 6.13 -105.07 -0.64 -3.31 16 6 C 0.59 6.51 7.81 -12.52 -0.10 6.42 16 7 O -0.55 -7.99 16.90 5.27 0.09 -7.90 16 8 N -0.72 -6.47 5.55 -61.38 -0.34 -6.81 16 9 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 10 C -0.13 -1.27 5.25 -26.73 -0.14 -1.41 16 11 C 0.06 0.70 4.96 -3.82 -0.02 0.69 16 12 N -0.52 -8.47 4.50 -244.37 -1.10 -9.57 16 13 C 0.02 0.32 8.96 60.06 0.54 0.86 16 14 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 15 C 0.44 10.47 7.47 -10.98 -0.08 10.39 16 16 O -0.58 -15.47 13.91 5.55 0.08 -15.40 16 17 N -0.57 -14.32 5.29 -10.96 -0.06 -14.38 16 18 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 22 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.08 0.64 11.50 -16.98 -0.20 0.44 16 27 N -0.29 -2.62 12.33 30.86 0.38 -2.24 16 28 H 0.06 0.26 8.14 -51.92 -0.42 -0.17 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.09 8.06 -51.93 -0.42 -0.33 16 33 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.40 2.58 7.43 -40.82 -0.30 2.28 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 39 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 40 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 41 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.09 1.86 5.83 -51.93 -0.30 1.56 16 43 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 44 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 45 H 0.09 1.43 7.93 -51.93 -0.41 1.01 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.19 0.91 7.50 -52.48 -0.39 0.51 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -35.90 403.49 -7.56 -43.46 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.40 Total: 8.27 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.77 Total: 9.08 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.62 Total: -59.63 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.17 Total: -23.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.90 -7.56 -43.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264971605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.488 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds