Wall clock time and date at job start Tue Mar 31 2020 20:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47353 * 2 1 4 4 N 1.28445 * 125.18900 * 274.53065 * 3 2 1 5 5 C 1.30861 * 110.92863 * 180.16875 * 4 3 2 6 6 C 1.39674 * 107.86020 * 359.58745 * 5 4 3 7 7 C 1.36601 * 125.18964 * 94.23807 * 3 2 1 8 8 C 1.47158 * 126.88342 * 359.97438 * 7 3 2 9 9 O 1.21623 * 120.00633 * 354.44072 * 8 7 3 10 10 N 1.34787 * 119.99604 * 174.43454 * 8 7 3 11 11 C 1.46498 * 119.99734 * 185.10739 * 10 8 7 12 12 C 1.53001 * 109.46864 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47002 * 180.02562 * 12 11 10 14 14 N 1.46907 * 109.47294 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99550 * 66.04671 * 14 13 12 16 16 C 1.46901 * 110.99958 * 190.00015 * 14 13 12 17 17 C 1.50704 * 109.46512 * 170.00600 * 16 14 13 18 18 O 1.21283 * 120.00320 * 359.97438 * 17 16 14 19 19 N 1.34779 * 119.99327 * 180.02562 * 17 16 14 20 20 C 1.37104 * 119.99652 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99845 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00010 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99961 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99935 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.47167 * 60.00230 * 24 22 20 26 26 H 1.48506 * 109.47139 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47550 * 299.99915 * 24 22 20 28 28 H 1.08997 * 109.47350 * 60.00297 * 1 2 3 29 29 H 1.09000 * 109.47374 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47183 * 300.00266 * 1 2 3 31 31 H 1.08998 * 109.47183 * 239.99734 * 2 1 3 32 32 H 1.09003 * 109.47074 * 120.00038 * 2 1 3 33 33 H 1.07994 * 126.07419 * 179.84984 * 5 4 3 34 34 H 1.07996 * 127.32217 * 180.26608 * 6 5 4 35 35 H 0.97000 * 119.99963 * 5.11636 * 10 8 7 36 36 H 1.08997 * 109.47386 * 300.00383 * 11 10 8 37 37 H 1.09003 * 109.46758 * 60.00678 * 11 10 8 38 38 H 1.08997 * 109.47141 * 300.00178 * 12 11 10 39 39 H 1.08995 * 109.47350 * 60.00317 * 12 11 10 40 40 H 1.09003 * 109.47301 * 300.00291 * 13 12 11 41 41 H 1.09002 * 109.47394 * 60.00405 * 13 12 11 42 42 H 1.09004 * 109.46958 * 60.00135 * 15 14 13 43 43 H 1.08995 * 109.47163 * 180.02562 * 15 14 13 44 44 H 1.09006 * 109.47145 * 300.00161 * 15 14 13 45 45 H 1.09000 * 109.47204 * 290.00176 * 16 14 13 46 46 H 1.08996 * 109.47380 * 50.00349 * 16 14 13 47 47 H 0.96996 * 120.00243 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00130 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1869 2.1067 -1.0464 5 6 2.6371 3.2927 -0.7254 6 6 2.7636 3.3411 0.6648 7 6 2.3586 2.0959 1.1133 8 6 2.3046 1.6345 2.5097 9 8 1.8312 0.5455 2.7726 10 7 2.7801 2.4188 3.4973 11 6 2.8296 1.9159 4.8724 12 6 3.4056 2.9962 5.7900 13 6 3.4580 2.4708 7.2260 14 7 4.0116 3.5078 8.1070 15 6 3.1094 4.6641 8.1906 16 6 4.2984 2.9662 9.4421 17 6 5.0844 3.9776 10.2362 18 8 5.3771 5.0443 9.7388 19 7 5.4627 3.6962 11.4988 20 6 6.1782 4.6161 12.2211 21 1 6.4389 5.5659 11.7781 22 6 6.5678 4.3263 13.5229 23 7 6.2502 3.1707 14.0620 24 14 7.5432 5.5793 14.5067 25 1 6.7523 6.8293 14.6388 26 1 7.8325 5.0321 15.8567 27 1 8.8198 5.8729 13.8072 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.8659 4.0936 -1.4128 34 1 3.1045 4.1733 1.2627 35 1 3.0893 3.3163 3.2977 36 1 1.8229 1.6588 5.2018 37 1 3.4625 1.0294 4.9124 38 1 4.4123 3.2537 5.4608 39 1 2.7725 3.8825 5.7500 40 1 2.4514 2.2130 7.5555 41 1 4.0915 1.5847 7.2659 42 1 2.1460 4.3452 8.5885 43 1 3.5435 5.4168 8.8486 44 1 2.9694 5.0884 7.1963 45 1 3.3615 2.7499 9.9554 46 1 4.8796 2.0493 9.3451 47 1 5.2289 2.8430 11.8964 48 1 6.5225 2.9682 14.9708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264980279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:14 Heat of formation + Delta-G solvation = 9.958739 kcal Electronic energy + Delta-G solvation = -27837.484920 eV Core-core repulsion = 23736.444302 eV Total energy + Delta-G solvation = -4101.040618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.91737 -39.77505 -38.68095 -36.98839 -35.57419 -34.73233 -33.86845 -32.25713 -31.25246 -30.74955 -30.16582 -27.88819 -26.63446 -24.96320 -24.42829 -23.50453 -22.63570 -21.58211 -21.08304 -20.07206 -19.15904 -18.37053 -17.83129 -16.68806 -16.55490 -16.19537 -16.01300 -15.72172 -15.23918 -15.03740 -14.94565 -14.64941 -14.47391 -14.28964 -14.18519 -13.70561 -13.44208 -13.41860 -13.32458 -12.97625 -12.50920 -12.39684 -12.15963 -11.92531 -11.76887 -11.72222 -11.48760 -11.27307 -11.25595 -11.19852 -10.91443 -10.77090 -10.44402 -10.42677 -10.21560 -9.70391 -9.47426 -9.46969 -9.35471 -8.46571 -7.98390 -7.86892 -6.41812 -3.82731 0.86366 1.95944 2.23680 2.77987 2.83898 3.19778 3.25622 3.29801 3.89989 3.95601 4.10184 4.17362 4.23330 4.54040 4.60698 4.73974 4.76491 4.83881 4.87611 4.99740 5.07065 5.14860 5.18953 5.24835 5.31054 5.34652 5.40533 5.45553 5.54774 5.63242 5.67507 5.71816 5.88030 5.92667 5.96641 6.00616 6.06659 6.11112 6.28000 6.33751 6.54060 6.99881 7.24351 7.36933 7.54785 7.63503 7.74159 8.06048 8.61753 9.17880 9.54362 10.06247 10.75821 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033261 B = 0.001484 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.635903 B =18860.937100 C =19369.496277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.253 5.253 4 N -0.277 5.277 5 C -0.004 4.004 6 C -0.189 4.189 7 C -0.039 4.039 8 C 0.591 3.409 9 O -0.540 6.540 10 N -0.711 5.711 11 C 0.122 3.878 12 C -0.128 4.128 13 C 0.058 3.942 14 N -0.519 5.519 15 C 0.020 3.980 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.187 0.813 34 H 0.162 0.838 35 H 0.405 0.595 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.014 0.986 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 -5.505 -25.682 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.042 5.042 4 N -0.110 5.110 5 C -0.179 4.179 6 C -0.218 4.218 7 C -0.168 4.168 8 C 0.376 3.624 9 O -0.417 6.417 10 N -0.363 5.363 11 C -0.001 4.001 12 C -0.167 4.167 13 C -0.071 4.071 14 N -0.243 5.243 15 C -0.128 4.128 16 C -0.086 4.086 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.204 0.796 34 H 0.179 0.821 35 H 0.241 0.759 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.032 0.968 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.710 -6.321 -26.708 29.461 hybrid contribution -0.024 0.717 1.721 1.865 sum -10.734 -5.604 -24.987 27.766 Atomic orbital electron populations 1.22071 0.93328 1.03602 1.03083 1.22226 0.96376 0.76434 1.05876 1.45887 1.44078 1.12346 1.01858 1.73215 1.18668 1.05211 1.13901 1.23596 1.04017 0.95248 0.95055 1.22297 1.06922 0.96766 0.95802 1.21413 1.11151 0.94370 0.89870 1.16901 0.78022 0.84386 0.83098 1.90790 1.45495 1.21527 1.83921 1.45677 1.64550 1.18201 1.07866 1.21420 1.01966 0.97534 0.79210 1.21786 1.02641 0.97908 0.94328 1.21995 0.98225 0.94951 0.91916 1.61547 1.45334 1.07026 1.10343 1.22583 0.93175 0.94659 1.02382 1.21866 0.99318 0.98091 0.89289 1.19733 0.85501 0.88917 0.82935 1.90476 1.59729 1.25891 1.70139 1.41866 1.48776 1.18218 1.11228 1.19650 1.29569 0.98911 0.94815 0.87962 1.25255 0.98231 0.97252 0.97169 1.69604 1.46748 1.22028 1.15947 0.85919 0.79927 0.80068 0.78295 1.19944 1.20998 1.19894 0.91823 0.90003 0.91623 0.88459 0.86433 0.79592 0.82089 0.75926 0.91051 0.90903 0.89975 0.90926 0.94833 0.90549 0.96783 0.88606 0.92089 0.93450 0.89368 0.77492 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.11 0.85 6.58 -4.04 -0.03 0.82 16 3 N -0.25 -2.44 3.35 -57.14 -0.19 -2.64 16 4 N -0.28 -2.74 11.90 30.59 0.36 -2.38 16 5 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.41 10.50 -38.98 -0.41 -1.82 16 7 C -0.04 -0.37 6.96 -82.06 -0.57 -0.94 16 8 C 0.59 5.93 7.78 -12.63 -0.10 5.83 16 9 O -0.54 -6.72 14.68 5.26 0.08 -6.64 16 10 N -0.71 -5.64 5.55 -61.47 -0.34 -5.98 16 11 C 0.12 1.03 5.68 -4.04 -0.02 1.01 16 12 C -0.13 -1.16 5.25 -26.73 -0.14 -1.30 16 13 C 0.06 0.66 4.96 -3.82 -0.02 0.64 16 14 N -0.52 -8.16 4.50 -244.36 -1.10 -9.26 16 15 C 0.02 0.30 8.96 60.07 0.54 0.84 16 16 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 17 C 0.44 10.28 7.47 -10.98 -0.08 10.20 16 18 O -0.58 -15.25 13.91 5.55 0.08 -15.17 16 19 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.12 0.98 6.20 -51.93 -0.32 0.66 16 33 H 0.19 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.16 0.72 7.59 -52.49 -0.40 0.32 16 35 H 0.41 2.32 7.51 -40.82 -0.31 2.01 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.64 6.55 -51.93 -0.34 0.30 16 40 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 42 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.10 1.83 5.82 -51.93 -0.30 1.53 16 44 H 0.06 0.79 6.47 -51.93 -0.34 0.45 16 45 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -33.89 398.95 -7.70 -41.59 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.31 Total: 9.24 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.93 Total: 7.18 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.60 Total: -58.06 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.15 Total: -21.82 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.89 -7.70 -41.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264980279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.547 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds