Wall clock time and date at job start Tue Mar 31 2020 20:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47353 * 2 1 4 4 N 1.28445 * 125.18900 * 274.53065 * 3 2 1 5 5 C 1.30861 * 110.92863 * 180.16875 * 4 3 2 6 6 C 1.39674 * 107.86020 * 359.58745 * 5 4 3 7 7 C 1.36601 * 125.18964 * 94.23807 * 3 2 1 8 8 C 1.47158 * 126.88342 * 359.97438 * 7 3 2 9 9 O 1.21623 * 120.00633 * 354.44072 * 8 7 3 10 10 N 1.34787 * 119.99604 * 174.43454 * 8 7 3 11 11 C 1.46498 * 119.99734 * 185.10739 * 10 8 7 12 12 C 1.53001 * 109.46864 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47002 * 180.02562 * 12 11 10 14 14 N 1.46907 * 109.47294 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99550 * 66.04671 * 14 13 12 16 16 C 1.46901 * 110.99958 * 190.00015 * 14 13 12 17 17 C 1.50704 * 109.46512 * 170.00600 * 16 14 13 18 18 O 1.21283 * 120.00320 * 359.97438 * 17 16 14 19 19 N 1.34779 * 119.99327 * 180.02562 * 17 16 14 20 20 C 1.37104 * 119.99652 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99845 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00010 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99961 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99935 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.47167 * 60.00230 * 24 22 20 26 26 H 1.48506 * 109.47139 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47550 * 299.99915 * 24 22 20 28 28 H 1.08997 * 109.47350 * 60.00297 * 1 2 3 29 29 H 1.09000 * 109.47374 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47183 * 300.00266 * 1 2 3 31 31 H 1.08998 * 109.47183 * 239.99734 * 2 1 3 32 32 H 1.09003 * 109.47074 * 120.00038 * 2 1 3 33 33 H 1.07994 * 126.07419 * 179.84984 * 5 4 3 34 34 H 1.07996 * 127.32217 * 180.26608 * 6 5 4 35 35 H 0.97000 * 119.99963 * 5.11636 * 10 8 7 36 36 H 1.08997 * 109.47386 * 300.00383 * 11 10 8 37 37 H 1.09003 * 109.46758 * 60.00678 * 11 10 8 38 38 H 1.08997 * 109.47141 * 300.00178 * 12 11 10 39 39 H 1.08995 * 109.47350 * 60.00317 * 12 11 10 40 40 H 1.09003 * 109.47301 * 300.00291 * 13 12 11 41 41 H 1.09002 * 109.47394 * 60.00405 * 13 12 11 42 42 H 1.09004 * 109.46958 * 60.00135 * 15 14 13 43 43 H 1.08995 * 109.47163 * 180.02562 * 15 14 13 44 44 H 1.09006 * 109.47145 * 300.00161 * 15 14 13 45 45 H 1.09000 * 109.47204 * 290.00176 * 16 14 13 46 46 H 1.08996 * 109.47380 * 50.00349 * 16 14 13 47 47 H 0.96996 * 120.00243 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00130 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1869 2.1067 -1.0464 5 6 2.6371 3.2927 -0.7254 6 6 2.7636 3.3411 0.6648 7 6 2.3586 2.0959 1.1133 8 6 2.3046 1.6345 2.5097 9 8 1.8312 0.5455 2.7726 10 7 2.7801 2.4188 3.4973 11 6 2.8296 1.9159 4.8724 12 6 3.4056 2.9962 5.7900 13 6 3.4580 2.4708 7.2260 14 7 4.0116 3.5078 8.1070 15 6 3.1094 4.6641 8.1906 16 6 4.2984 2.9662 9.4421 17 6 5.0844 3.9776 10.2362 18 8 5.3771 5.0443 9.7388 19 7 5.4627 3.6962 11.4988 20 6 6.1782 4.6161 12.2211 21 1 6.4389 5.5659 11.7781 22 6 6.5678 4.3263 13.5229 23 7 6.2502 3.1707 14.0620 24 14 7.5432 5.5793 14.5067 25 1 6.7523 6.8293 14.6388 26 1 7.8325 5.0321 15.8567 27 1 8.8198 5.8729 13.8072 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.8659 4.0936 -1.4128 34 1 3.1045 4.1733 1.2627 35 1 3.0893 3.3163 3.2977 36 1 1.8229 1.6588 5.2018 37 1 3.4625 1.0294 4.9124 38 1 4.4123 3.2537 5.4608 39 1 2.7725 3.8825 5.7500 40 1 2.4514 2.2130 7.5555 41 1 4.0915 1.5847 7.2659 42 1 2.1460 4.3452 8.5885 43 1 3.5435 5.4168 8.8486 44 1 2.9694 5.0884 7.1963 45 1 3.3615 2.7499 9.9554 46 1 4.8796 2.0493 9.3451 47 1 5.2289 2.8430 11.8964 48 1 6.5225 2.9682 14.9708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264980279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:13 Heat of formation + Delta-G solvation = -15.824432 kcal Electronic energy + Delta-G solvation = -27838.602962 eV Core-core repulsion = 23736.444302 eV Total energy + Delta-G solvation = -4102.158660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53677 -40.56099 -40.30422 -38.25229 -36.45022 -35.82895 -35.33962 -33.28510 -33.04519 -31.51480 -30.74420 -29.32576 -27.64153 -26.60666 -25.17720 -24.42524 -23.45129 -22.23170 -22.02931 -20.94677 -20.77522 -19.82861 -19.01656 -17.84054 -17.34744 -17.17349 -16.89655 -16.64132 -16.54314 -16.32388 -16.07219 -15.69365 -15.58457 -15.35758 -15.09488 -14.88298 -14.76007 -14.68013 -13.98632 -13.72364 -13.53351 -13.45656 -13.34766 -13.04567 -13.00480 -12.80571 -12.69359 -12.49162 -12.38936 -12.30532 -12.29904 -12.11102 -11.83659 -11.61838 -11.42729 -11.20194 -10.41753 -10.24890 -10.09106 -9.98954 -9.97440 -9.16590 -8.44118 -5.92681 0.19853 1.35636 1.41342 1.43081 1.53833 1.64192 2.08909 2.10272 2.14875 2.30957 2.83284 3.22948 3.45838 3.53003 3.56084 3.98848 3.99134 4.04567 4.08423 4.16298 4.19619 4.28905 4.34433 4.43145 4.51905 4.57822 4.58070 4.63759 4.66022 4.68372 4.78300 4.81179 4.83321 4.87768 5.07175 5.11626 5.21837 5.27599 5.37991 5.43361 5.55651 5.73982 5.91320 6.10134 6.26391 6.36392 6.63644 6.98782 7.08948 7.15684 7.59821 8.15750 8.72999 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033261 B = 0.001484 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.635903 B =18860.937100 C =19369.496277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.106 3.894 3 N -0.265 5.265 4 N -0.301 5.301 5 C -0.008 4.008 6 C -0.179 4.179 7 C -0.062 4.062 8 C 0.589 3.411 9 O -0.570 6.570 10 N -0.700 5.700 11 C 0.130 3.870 12 C -0.115 4.115 13 C 0.057 3.943 14 N -0.537 5.537 15 C 0.024 3.976 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.215 0.785 34 H 0.191 0.809 35 H 0.417 0.583 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.027 0.973 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 -5.393 -26.481 29.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 N -0.054 5.054 4 N -0.134 5.134 5 C -0.183 4.183 6 C -0.207 4.207 7 C -0.190 4.190 8 C 0.375 3.625 9 O -0.450 6.450 10 N -0.352 5.352 11 C 0.006 3.994 12 C -0.153 4.153 13 C -0.071 4.071 14 N -0.261 5.261 15 C -0.124 4.124 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.500 6.500 19 N -0.214 5.214 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.232 0.768 34 H 0.208 0.792 35 H 0.255 0.745 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.127 0.873 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.906 -6.209 -27.516 30.243 hybrid contribution 0.016 0.705 1.885 2.012 sum -10.890 -5.504 -25.632 28.388 Atomic orbital electron populations 1.22007 0.92789 1.04514 1.01917 1.22308 0.96819 0.76142 1.06024 1.46068 1.44536 1.12833 1.01912 1.73193 1.19579 1.06219 1.14429 1.24187 1.03025 0.95243 0.95890 1.22716 1.05408 0.96665 0.95958 1.21562 1.12455 0.95391 0.89621 1.17045 0.77690 0.84102 0.83655 1.90771 1.47016 1.22861 1.84387 1.45565 1.63754 1.18532 1.07328 1.21285 1.01676 0.97172 0.79231 1.21634 1.02683 0.98101 0.92914 1.22090 0.98825 0.94056 0.92082 1.61510 1.46568 1.08327 1.09732 1.22471 0.93179 0.93803 1.02909 1.21744 0.99377 0.96610 0.89722 1.20806 0.84489 0.89401 0.82446 1.90455 1.60854 1.27849 1.70796 1.41947 1.49305 1.18066 1.12035 1.19630 1.31561 0.99067 0.95998 0.90253 1.26019 0.98683 0.99069 0.97514 1.69668 1.47105 1.23077 1.16375 0.84998 0.78376 0.77821 0.77188 1.19723 1.19619 1.19746 0.92014 0.88099 0.93516 0.87077 0.87431 0.76808 0.79157 0.74506 0.91298 0.91237 0.90238 0.90227 0.93577 0.89711 0.95455 0.92903 0.89638 0.91624 0.87259 0.77085 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.24 71.98 0.74 -1.33 16 2 C 0.11 1.63 6.58 86.38 0.57 2.20 16 3 N -0.26 -4.99 3.35 -334.69 -1.12 -6.11 16 4 N -0.30 -5.68 11.90 -57.14 -0.68 -6.36 16 5 C -0.01 -0.12 12.03 85.18 1.02 0.91 16 6 C -0.18 -2.28 10.50 22.66 0.24 -2.05 16 7 C -0.06 -1.11 6.96 40.79 0.28 -0.83 16 8 C 0.59 11.33 7.78 86.58 0.67 12.00 16 9 O -0.57 -14.14 14.68 -4.10 -0.06 -14.20 16 10 N -0.70 -9.82 5.55 -466.63 -2.59 -12.40 16 11 C 0.13 1.93 5.68 86.38 0.49 2.42 16 12 C -0.12 -1.78 5.25 30.59 0.16 -1.62 16 13 C 0.06 1.15 4.96 86.30 0.43 1.58 16 14 N -0.54 -15.94 4.50 -927.02 -4.17 -20.12 16 15 C 0.02 0.71 8.96 127.69 1.14 1.86 16 16 C 0.06 1.89 5.45 85.56 0.47 2.36 16 17 C 0.44 20.63 7.47 87.66 0.66 21.28 16 18 O -0.61 -33.13 13.91 -3.04 -0.04 -33.17 16 19 N -0.58 -29.30 5.29 -306.99 -1.62 -30.92 16 20 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.53 13.05 21.66 0.28 -49.24 16 24 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.11 1.85 6.20 -2.39 -0.01 1.84 16 33 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.19 1.08 7.59 -2.91 -0.02 1.06 16 35 H 0.42 3.73 7.51 -92.71 -0.70 3.03 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.14 6.55 -2.39 -0.02 1.13 16 40 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 41 H 0.08 1.58 7.93 -2.39 -0.02 1.56 16 42 H 0.03 0.71 8.14 -2.38 -0.02 0.70 16 43 H 0.05 2.03 5.82 -2.39 -0.01 2.02 16 44 H 0.09 2.04 6.47 -2.38 -0.02 2.02 16 45 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 46 H 0.11 3.20 7.93 -2.39 -0.02 3.18 16 47 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 48 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -74.72 398.95 -0.26 -74.98 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.44 Total: 32.26 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 8.15 Total: 20.58 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -9.90 Total: -125.16 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.10 Total: -47.38 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -74.72 -0.26 -74.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264980279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.157 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds