Wall clock time and date at job start Tue Mar 31 2020 20:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.46660 * 2 1 4 4 C 1.35035 * 124.88316 * 125.02448 * 3 2 1 5 5 C 1.35362 * 107.23203 * 179.71338 * 4 3 2 6 6 C 1.41506 * 105.49903 * 0.37292 * 5 4 3 7 7 C 1.47711 * 126.51683 * 179.87878 * 6 5 4 8 8 O 1.21573 * 120.00075 * 359.71742 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.44236 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27919 * 9 7 6 11 11 C 1.52997 * 109.47551 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47270 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.46881 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00445 * 66.04105 * 13 12 11 15 15 C 1.46897 * 110.99826 * 189.99849 * 13 12 11 16 16 C 1.50707 * 109.47383 * 169.99744 * 15 13 12 17 17 O 1.21291 * 119.99622 * 0.02562 * 16 15 13 18 18 N 1.34768 * 120.00180 * 180.02562 * 16 15 13 19 19 C 1.37101 * 119.99784 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00198 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99951 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99725 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00111 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47060 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46985 * 120.00128 * 23 21 19 26 26 H 1.48498 * 109.46801 * 240.00244 * 23 21 19 27 27 N 1.28463 * 124.88731 * 304.97814 * 3 2 1 28 28 H 1.09005 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46922 * 299.99164 * 1 2 3 30 30 H 1.08997 * 109.47655 * 59.99750 * 1 2 3 31 31 H 1.09004 * 109.46922 * 240.00836 * 2 1 3 32 32 H 1.08997 * 109.47655 * 120.00250 * 2 1 3 33 33 H 1.08008 * 126.38238 * 359.97438 * 4 3 2 34 34 H 1.07997 * 127.25460 * 180.23812 * 5 4 3 35 35 H 0.97000 * 119.99736 * 0.27192 * 9 7 6 36 36 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 37 37 H 1.09002 * 109.47196 * 59.99076 * 10 9 7 38 38 H 1.09007 * 109.46479 * 299.99856 * 11 10 9 39 39 H 1.08997 * 109.46852 * 59.99432 * 11 10 9 40 40 H 1.08992 * 109.46818 * 299.99508 * 12 11 10 41 41 H 1.08997 * 109.47123 * 59.99715 * 12 11 10 42 42 H 1.09011 * 109.46783 * 60.00025 * 14 13 12 43 43 H 1.08996 * 109.47597 * 179.97438 * 14 13 12 44 44 H 1.09000 * 109.47253 * 300.00202 * 14 13 12 45 45 H 1.08998 * 109.47315 * 289.99997 * 15 13 12 46 46 H 1.09007 * 109.47373 * 50.00201 * 15 13 12 47 47 H 0.96999 * 120.00485 * 359.97438 * 18 16 15 48 48 H 0.97000 * 119.99724 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8749 1.8976 0.9071 5 6 3.0877 3.1904 0.5673 6 6 2.3009 3.4122 -0.5878 7 6 2.1870 4.6757 -1.3444 8 8 2.8043 5.6586 -0.9827 9 7 1.4029 4.7374 -2.4389 10 6 1.2947 5.9888 -3.1928 11 6 0.3501 5.7892 -4.3797 12 6 0.2365 7.0963 -5.1667 13 7 -0.6699 6.9043 -6.3066 14 6 -2.0430 6.6505 -5.8505 15 6 -0.6220 8.0562 -7.2170 16 6 -1.3657 7.7254 -8.4854 17 8 -1.8850 6.6372 -8.6176 18 7 -1.4538 8.6385 -9.4726 19 6 -2.1308 8.3377 -10.6262 20 1 -2.5939 7.3691 -10.7436 21 6 -2.2221 9.2794 -11.6439 22 7 -1.6591 10.4581 -11.5008 23 14 -3.1440 8.8693 -13.2160 24 1 -3.6815 7.4878 -13.1286 25 1 -4.2656 9.8258 -13.3960 26 1 -2.2182 8.9685 -14.3728 27 7 1.6935 2.2754 -0.8634 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.3125 1.3750 1.7450 34 1 3.7223 3.9033 1.0726 35 1 0.9105 3.9531 -2.7275 36 1 0.9023 6.7714 -2.5434 37 1 2.2798 6.2796 -3.5577 38 1 0.7430 5.0066 -5.0290 39 1 -0.6350 5.4982 -4.0151 40 1 -0.1565 7.8784 -4.5172 41 1 1.2216 7.3877 -5.5313 42 1 -2.3939 7.4998 -5.2641 43 1 -2.6932 6.5125 -6.7144 44 1 -2.0609 5.7515 -5.2345 45 1 -1.0866 8.9178 -6.7376 46 1 0.4161 8.2886 -7.4548 47 1 -1.0389 9.5089 -9.3668 48 1 -1.7225 11.1153 -12.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265043180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:16 Heat of formation + Delta-G solvation = 11.005544 kcal Electronic energy + Delta-G solvation = -27569.008352 eV Core-core repulsion = 23468.013127 eV Total energy + Delta-G solvation = -4100.995225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.02563 -39.57349 -38.62267 -36.88487 -35.16902 -35.04307 -33.82708 -31.86465 -31.20857 -30.95137 -30.30884 -27.84065 -26.69312 -25.24565 -24.49091 -23.02168 -22.11725 -21.78127 -20.97516 -19.95948 -19.11479 -18.24228 -17.79929 -16.98757 -16.48806 -16.31608 -15.96820 -15.69562 -15.19581 -14.94020 -14.82638 -14.59716 -14.31182 -14.18442 -13.99321 -13.63939 -13.50384 -13.35520 -13.21276 -12.94796 -12.71009 -12.26854 -12.08911 -12.01183 -11.83007 -11.64727 -11.45312 -11.24481 -11.21196 -11.19621 -10.89927 -10.66520 -10.33064 -10.32177 -10.19673 -9.66689 -9.46230 -9.45830 -9.18883 -8.41365 -7.94589 -7.80960 -6.39056 -3.79688 1.27286 1.78560 1.99564 2.96458 3.18168 3.21966 3.28513 3.35757 3.83205 3.94147 4.03572 4.26972 4.27576 4.35529 4.38090 4.53315 4.80100 4.89040 4.98726 5.04899 5.11355 5.14474 5.15925 5.28283 5.30428 5.40478 5.47523 5.51345 5.58262 5.65046 5.75432 5.78606 5.98037 6.01966 6.02860 6.06695 6.15083 6.26878 6.32569 6.35126 6.59979 7.23763 7.31681 7.44168 7.57334 7.58061 8.02382 8.09815 8.65145 9.21208 9.57965 10.09956 10.78837 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023636 B = 0.001511 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.374089 B =18520.929717 C =19399.543210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.281 5.281 4 C -0.021 4.021 5 C -0.179 4.179 6 C -0.018 4.018 7 C 0.604 3.396 8 O -0.535 6.535 9 N -0.716 5.716 10 C 0.120 3.880 11 C -0.127 4.127 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.046 3.954 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 N -0.258 5.258 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.407 0.593 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.013 0.987 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.980 -17.486 26.681 32.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.070 5.070 4 C -0.163 4.163 5 C -0.207 4.207 6 C -0.178 4.178 7 C 0.388 3.612 8 O -0.409 6.409 9 N -0.367 5.367 10 C -0.003 4.003 11 C -0.166 4.166 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.128 4.128 15 C -0.086 4.086 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 N -0.094 5.094 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.199 0.801 34 H 0.180 0.820 35 H 0.242 0.758 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.032 0.968 43 H 0.113 0.887 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.446 -18.368 25.678 32.437 hybrid contribution -0.061 1.069 0.206 1.090 sum 7.385 -17.299 25.883 31.996 Atomic orbital electron populations 1.22086 0.92913 1.03577 1.04058 1.22045 0.96867 0.76605 1.04872 1.45652 1.32316 1.10424 1.18644 1.22896 0.99209 0.95550 0.98654 1.21792 1.04398 0.96146 0.98361 1.21952 1.02916 0.93160 0.99816 1.16879 0.79109 0.85442 0.79773 1.90803 1.45907 1.35735 1.68496 1.45851 1.47886 1.15181 1.27794 1.21385 1.00507 0.85694 0.92761 1.21775 0.99637 0.99454 0.95697 1.22001 0.97751 0.95568 0.91745 1.61537 1.08465 1.39168 1.15111 1.22577 0.89846 0.98934 1.01411 1.21867 1.01373 0.91600 0.93735 1.19753 0.85807 0.86095 0.85328 1.90479 1.51146 1.23503 1.81062 1.41877 1.48614 1.14980 1.14750 1.19751 1.29417 1.01449 0.92127 0.87871 1.25260 0.97963 0.95069 0.99711 1.69624 1.44635 1.05472 1.34623 0.85804 0.78886 0.78682 0.80986 1.19249 1.20820 1.20772 1.73447 1.22134 0.98064 1.15806 0.90103 0.91825 0.90594 0.88713 0.87822 0.80100 0.82016 0.75754 0.91283 0.91012 0.90109 0.91075 0.94842 0.90544 0.96813 0.88668 0.92087 0.93457 0.89355 0.77490 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.02 37.15 0.37 -0.19 16 2 C 0.12 0.36 7.12 -4.04 -0.03 0.33 16 3 N -0.28 -1.95 3.41 -61.33 -0.21 -2.16 16 4 C -0.02 -0.13 11.40 -17.17 -0.20 -0.33 16 5 C -0.18 -1.62 10.81 -39.36 -0.43 -2.04 16 6 C -0.02 -0.20 7.13 -82.76 -0.59 -0.79 16 7 C 0.60 7.62 7.83 -12.39 -0.10 7.53 16 8 O -0.53 -8.31 16.93 5.30 0.09 -8.22 16 9 N -0.72 -7.65 5.55 -61.29 -0.34 -7.99 16 10 C 0.12 1.27 5.67 -4.04 -0.02 1.25 16 11 C -0.13 -1.38 5.25 -26.73 -0.14 -1.52 16 12 C 0.06 0.74 4.96 -3.83 -0.02 0.72 16 13 N -0.52 -8.69 4.50 -244.37 -1.10 -9.79 16 14 C 0.02 0.33 8.96 60.06 0.54 0.87 16 15 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 16 C 0.44 10.59 7.47 -10.99 -0.08 10.51 16 17 O -0.58 -15.61 13.91 5.55 0.08 -15.54 16 18 N -0.57 -14.45 5.29 -10.96 -0.06 -14.51 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 22 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 23 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 N -0.26 -2.50 11.36 33.42 0.38 -2.12 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.02 8.04 -51.93 -0.42 -0.40 16 33 H 0.18 0.41 8.06 -52.48 -0.42 -0.02 16 34 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.41 3.81 8.20 -40.82 -0.33 3.47 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.75 6.55 -51.93 -0.34 0.41 16 40 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 41 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 42 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 43 H 0.09 1.90 5.82 -51.93 -0.30 1.59 16 44 H 0.06 0.86 6.47 -51.93 -0.34 0.52 16 45 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 46 H 0.09 1.45 7.93 -51.92 -0.41 1.04 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -35.51 403.86 -7.79 -43.30 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.46 Total: 9.70 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -0.96 Total: 9.10 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.60 Total: -60.57 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.17 Total: -23.76 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.51 -7.79 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265043180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.304 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds