Wall clock time and date at job start Tue Mar 31 2020 20:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.46660 * 2 1 4 4 C 1.35035 * 124.88316 * 125.02448 * 3 2 1 5 5 C 1.35362 * 107.23203 * 179.71338 * 4 3 2 6 6 C 1.41506 * 105.49903 * 0.37292 * 5 4 3 7 7 C 1.47711 * 126.51683 * 179.87878 * 6 5 4 8 8 O 1.21573 * 120.00075 * 359.71742 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.44236 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27919 * 9 7 6 11 11 C 1.52997 * 109.47551 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47270 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.46881 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00445 * 66.04105 * 13 12 11 15 15 C 1.46897 * 110.99826 * 189.99849 * 13 12 11 16 16 C 1.50707 * 109.47383 * 169.99744 * 15 13 12 17 17 O 1.21291 * 119.99622 * 0.02562 * 16 15 13 18 18 N 1.34768 * 120.00180 * 180.02562 * 16 15 13 19 19 C 1.37101 * 119.99784 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00198 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99951 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99725 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00111 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47060 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46985 * 120.00128 * 23 21 19 26 26 H 1.48498 * 109.46801 * 240.00244 * 23 21 19 27 27 N 1.28463 * 124.88731 * 304.97814 * 3 2 1 28 28 H 1.09005 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46922 * 299.99164 * 1 2 3 30 30 H 1.08997 * 109.47655 * 59.99750 * 1 2 3 31 31 H 1.09004 * 109.46922 * 240.00836 * 2 1 3 32 32 H 1.08997 * 109.47655 * 120.00250 * 2 1 3 33 33 H 1.08008 * 126.38238 * 359.97438 * 4 3 2 34 34 H 1.07997 * 127.25460 * 180.23812 * 5 4 3 35 35 H 0.97000 * 119.99736 * 0.27192 * 9 7 6 36 36 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 37 37 H 1.09002 * 109.47196 * 59.99076 * 10 9 7 38 38 H 1.09007 * 109.46479 * 299.99856 * 11 10 9 39 39 H 1.08997 * 109.46852 * 59.99432 * 11 10 9 40 40 H 1.08992 * 109.46818 * 299.99508 * 12 11 10 41 41 H 1.08997 * 109.47123 * 59.99715 * 12 11 10 42 42 H 1.09011 * 109.46783 * 60.00025 * 14 13 12 43 43 H 1.08996 * 109.47597 * 179.97438 * 14 13 12 44 44 H 1.09000 * 109.47253 * 300.00202 * 14 13 12 45 45 H 1.08998 * 109.47315 * 289.99997 * 15 13 12 46 46 H 1.09007 * 109.47373 * 50.00201 * 15 13 12 47 47 H 0.96999 * 120.00485 * 359.97438 * 18 16 15 48 48 H 0.97000 * 119.99724 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8749 1.8976 0.9071 5 6 3.0877 3.1904 0.5673 6 6 2.3009 3.4122 -0.5878 7 6 2.1870 4.6757 -1.3444 8 8 2.8043 5.6586 -0.9827 9 7 1.4029 4.7374 -2.4389 10 6 1.2947 5.9888 -3.1928 11 6 0.3501 5.7892 -4.3797 12 6 0.2365 7.0963 -5.1667 13 7 -0.6699 6.9043 -6.3066 14 6 -2.0430 6.6505 -5.8505 15 6 -0.6220 8.0562 -7.2170 16 6 -1.3657 7.7254 -8.4854 17 8 -1.8850 6.6372 -8.6176 18 7 -1.4538 8.6385 -9.4726 19 6 -2.1308 8.3377 -10.6262 20 1 -2.5939 7.3691 -10.7436 21 6 -2.2221 9.2794 -11.6439 22 7 -1.6591 10.4581 -11.5008 23 14 -3.1440 8.8693 -13.2160 24 1 -3.6815 7.4878 -13.1286 25 1 -4.2656 9.8258 -13.3960 26 1 -2.2182 8.9685 -14.3728 27 7 1.6935 2.2754 -0.8634 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.3125 1.3750 1.7450 34 1 3.7223 3.9033 1.0726 35 1 0.9105 3.9531 -2.7275 36 1 0.9023 6.7714 -2.5434 37 1 2.2798 6.2796 -3.5577 38 1 0.7430 5.0066 -5.0290 39 1 -0.6350 5.4982 -4.0151 40 1 -0.1565 7.8784 -4.5172 41 1 1.2216 7.3877 -5.5313 42 1 -2.3939 7.4998 -5.2641 43 1 -2.6932 6.5125 -6.7144 44 1 -2.0609 5.7515 -5.2345 45 1 -1.0866 8.9178 -6.7376 46 1 0.4161 8.2886 -7.4548 47 1 -1.0389 9.5089 -9.3668 48 1 -1.7225 11.1153 -12.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265043180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:16 Heat of formation + Delta-G solvation = -16.592732 kcal Electronic energy + Delta-G solvation = -27570.205103 eV Core-core repulsion = 23468.013127 eV Total energy + Delta-G solvation = -4102.191976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.61144 -40.55671 -40.31379 -38.26741 -36.29224 -35.77752 -35.46552 -33.28101 -32.78572 -31.60806 -30.86528 -29.34941 -27.74795 -26.71450 -25.57400 -23.97469 -22.90359 -22.37994 -21.98774 -20.96026 -20.76148 -19.84028 -18.86328 -17.84973 -17.60204 -17.15924 -17.02181 -16.78088 -16.56427 -16.38807 -16.09880 -15.63100 -15.45510 -15.23358 -15.05058 -14.85523 -14.75632 -14.47083 -14.02179 -13.73678 -13.47826 -13.41138 -13.24558 -13.02099 -12.97972 -12.82749 -12.71748 -12.50767 -12.37648 -12.33849 -12.29763 -12.10530 -11.83789 -11.65427 -11.45118 -11.31580 -10.35289 -10.26336 -10.13623 -9.98391 -9.95158 -9.18386 -8.45268 -5.93782 0.52229 1.21299 1.37304 1.42233 1.55375 1.56588 2.07411 2.12714 2.30354 2.35740 2.82265 3.21693 3.33804 3.44440 3.87425 3.96264 3.98398 4.04873 4.06117 4.13769 4.26751 4.35167 4.37986 4.41489 4.50331 4.56334 4.61717 4.63044 4.73305 4.74992 4.78311 4.80609 4.83111 4.88865 5.08988 5.18729 5.23577 5.27249 5.34296 5.42278 5.42943 5.90207 5.91070 6.09031 6.23960 6.40402 6.62600 6.90586 7.13566 7.14813 7.58586 8.14577 8.72430 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023636 B = 0.001511 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.374089 B =18520.929717 C =19399.543210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.277 5.277 4 C 0.001 3.999 5 C -0.206 4.206 6 C -0.050 4.050 7 C 0.600 3.400 8 O -0.573 6.573 9 N -0.708 5.708 10 C 0.127 3.873 11 C -0.114 4.114 12 C 0.059 3.941 13 N -0.538 5.538 14 C 0.025 3.975 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.614 6.614 18 N -0.576 5.576 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.271 1.271 27 N -0.273 5.273 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.227 0.773 34 H 0.162 0.838 35 H 0.414 0.586 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.028 0.972 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -18.841 28.096 34.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.142 4.142 5 C -0.234 4.234 6 C -0.208 4.208 7 C 0.385 3.615 8 O -0.452 6.452 9 N -0.359 5.359 10 C 0.003 3.997 11 C -0.152 4.152 12 C -0.069 4.069 13 N -0.262 5.262 14 C -0.123 4.123 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.197 1.197 27 N -0.111 5.111 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.160 0.840 33 H 0.244 0.756 34 H 0.180 0.820 35 H 0.250 0.750 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.128 0.872 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.931 -19.728 27.094 34.441 hybrid contribution -0.219 1.365 -0.150 1.391 sum 7.712 -18.362 26.944 33.505 Atomic orbital electron populations 1.22064 0.93305 1.04525 1.02490 1.22475 0.96576 0.74814 1.07224 1.46125 1.31576 1.11148 1.17793 1.23507 0.97513 0.94535 0.98678 1.22015 1.05162 0.97816 0.98451 1.21873 1.04823 0.93126 1.01026 1.17189 0.78609 0.85749 0.79906 1.90763 1.47575 1.37186 1.69628 1.45810 1.47359 1.15463 1.27282 1.21294 1.00218 0.85666 0.92538 1.21619 0.99853 0.98427 0.95285 1.22073 0.97249 0.96833 0.90726 1.61492 1.09166 1.38834 1.16749 1.22460 0.89208 1.00615 1.00014 1.21749 1.01641 0.92745 0.91309 1.20791 0.84807 0.85067 0.86442 1.90457 1.52445 1.25022 1.82082 1.41948 1.49009 1.15546 1.14824 1.19702 1.31233 1.01155 0.94037 0.90307 1.26038 0.98325 0.94733 1.02249 1.69684 1.44930 1.05957 1.35681 0.84864 0.77966 0.78216 0.77237 1.19805 1.19638 1.19657 1.73391 1.22535 0.98215 1.16963 0.87908 0.92543 0.92959 0.87912 0.83957 0.75644 0.82049 0.74984 0.91309 0.91354 0.90667 0.90587 0.93412 0.89594 0.95337 0.92745 0.90005 0.91509 0.87223 0.77057 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.02 71.98 0.72 -0.10 16 2 C 0.11 0.35 7.12 86.38 0.61 0.97 16 3 N -0.28 -3.28 3.41 -347.94 -1.19 -4.47 16 4 C 0.00 0.01 11.40 83.54 0.95 0.96 16 5 C -0.21 -3.63 10.81 22.41 0.24 -3.39 16 6 C -0.05 -1.12 7.13 42.46 0.30 -0.81 16 7 C 0.60 15.56 7.83 86.75 0.68 16.24 16 8 O -0.57 -18.47 16.93 -3.95 -0.07 -18.53 16 9 N -0.71 -15.17 5.55 -466.10 -2.59 -17.75 16 10 C 0.13 2.59 5.67 86.38 0.49 3.08 16 11 C -0.11 -2.31 5.25 30.59 0.16 -2.15 16 12 C 0.06 1.38 4.96 86.30 0.43 1.81 16 13 N -0.54 -17.39 4.50 -927.06 -4.17 -21.56 16 14 C 0.02 0.80 8.96 127.69 1.14 1.94 16 15 C 0.06 2.00 5.45 85.56 0.47 2.47 16 16 C 0.44 21.33 7.47 87.66 0.66 21.99 16 17 O -0.61 -34.19 13.91 -3.06 -0.04 -34.23 16 18 N -0.58 -29.99 5.29 -306.98 -1.62 -31.62 16 19 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 22 N -0.92 -50.28 13.05 21.67 0.28 -49.99 16 23 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 27 N -0.27 -5.15 11.36 -48.17 -0.55 -5.70 16 28 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.14 -0.60 8.04 -2.39 -0.02 -0.62 16 33 H 0.23 -0.01 8.06 -2.91 -0.02 -0.04 16 34 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.41 7.70 8.20 -92.71 -0.76 6.94 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.08 1.48 6.55 -2.39 -0.02 1.47 16 40 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16 41 H 0.09 1.87 7.93 -2.39 -0.02 1.85 16 42 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.05 2.21 5.82 -2.39 -0.01 2.19 16 44 H 0.08 2.21 6.47 -2.39 -0.02 2.20 16 45 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 46 H 0.11 3.41 7.93 -2.38 -0.02 3.39 16 47 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 48 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -79.81 403.86 -0.28 -80.09 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.51 Total: 33.86 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 8.14 Total: 24.46 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -9.83 Total: -131.09 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.11 Total: -52.77 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -79.81 -0.28 -80.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265043180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.496 kcal (2) G-P(sol) polarization free energy of solvation -79.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds