Wall clock time and date at job start Tue Mar 31 2020 20:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47126 * 2 1 4 4 N 1.28441 * 125.19186 * 274.50909 * 3 2 1 5 5 C 1.30868 * 110.92695 * 180.16380 * 4 3 2 6 6 C 1.39669 * 107.86296 * 359.60970 * 5 4 3 7 7 C 1.36600 * 125.18891 * 94.24198 * 3 2 1 8 8 C 1.47168 * 126.88726 * 359.97438 * 7 3 2 9 9 O 1.21631 * 119.99502 * 354.41921 * 8 7 3 10 10 N 1.34774 * 120.00023 * 174.41526 * 8 7 3 11 11 C 1.46495 * 119.99903 * 185.11524 * 10 8 7 12 12 C 1.52999 * 109.47202 * 180.02562 * 11 10 8 13 13 C 1.53008 * 109.47265 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.47144 * 54.99759 * 13 12 11 15 15 C 1.52998 * 109.47121 * 174.99947 * 13 12 11 16 16 N 1.46903 * 109.46845 * 294.99729 * 13 12 11 17 17 C 1.46901 * 110.99753 * 154.99755 * 16 13 12 18 18 C 1.50698 * 109.47387 * 180.02562 * 17 16 13 19 19 O 1.21297 * 119.99679 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00496 * 180.02562 * 18 17 16 21 21 C 1.37093 * 120.00043 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00122 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99847 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99985 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00048 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47386 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47167 * 119.99983 * 25 23 21 28 28 H 1.48498 * 109.47159 * 239.99429 * 25 23 21 29 29 H 1.08995 * 109.47091 * 300.00246 * 1 2 3 30 30 H 1.08996 * 109.46685 * 60.00063 * 1 2 3 31 31 H 1.08995 * 109.46862 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47091 * 239.99754 * 2 1 3 33 33 H 1.09003 * 109.46683 * 119.99523 * 2 1 3 34 34 H 1.07997 * 126.06546 * 179.87664 * 5 4 3 35 35 H 1.07997 * 127.31806 * 180.25097 * 6 5 4 36 36 H 0.97004 * 119.99876 * 5.11012 * 10 8 7 37 37 H 1.09005 * 109.46722 * 299.99582 * 11 10 8 38 38 H 1.09001 * 109.47556 * 59.99675 * 11 10 8 39 39 H 1.08997 * 109.47058 * 299.99740 * 12 11 10 40 40 H 1.08996 * 109.47427 * 60.00089 * 12 11 10 41 41 H 1.09001 * 109.47266 * 59.99886 * 15 13 12 42 42 H 1.08996 * 109.46767 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.46948 * 299.99761 * 15 13 12 44 44 H 1.00894 * 111.00246 * 278.95300 * 16 13 12 45 45 H 1.09002 * 109.47094 * 300.00083 * 17 16 13 46 46 H 1.08997 * 109.47257 * 60.00117 * 17 16 13 47 47 H 0.97003 * 119.99443 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99950 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1873 2.1066 -1.0464 5 6 2.6373 3.2928 -0.7252 6 6 2.7637 3.3411 0.6649 7 6 2.3586 2.0958 1.1133 8 6 2.3048 1.6345 2.5098 9 8 1.8310 0.5455 2.7726 10 7 2.7806 2.4185 3.4973 11 6 2.8304 1.9155 4.8723 12 6 3.4068 2.9956 5.7899 13 6 3.4582 2.4705 7.2262 14 1 4.0173 1.5351 7.2512 15 6 4.1483 3.5013 8.1217 16 7 2.0914 2.2372 7.7114 17 6 2.0766 1.2272 8.7780 18 6 0.6611 1.0146 9.2491 19 8 -0.2464 1.6425 8.7454 20 7 0.4033 0.1270 10.2300 21 6 -0.8845 -0.0659 10.6588 22 1 -1.6923 0.4936 10.2110 23 6 -1.1502 -0.9807 11.6704 24 7 -0.1671 -1.6613 12.2157 25 14 -2.9049 -1.2441 12.2543 26 1 -3.8201 -0.3632 11.4851 27 1 -3.2891 -2.6630 12.0431 28 1 -3.0004 -0.9154 13.6993 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8658 4.0937 -1.4127 35 1 3.1046 4.1733 1.2628 36 1 3.0901 3.3159 3.2976 37 1 1.8236 1.6588 5.2019 38 1 3.4630 1.0288 4.9122 39 1 4.4135 3.2528 5.4606 40 1 2.7738 3.8820 5.7501 41 1 3.5893 4.4367 8.0966 42 1 4.1845 3.1274 9.1449 43 1 5.1625 3.6743 7.7616 44 1 1.6663 3.0978 8.0224 45 1 2.4765 0.2883 8.3949 46 1 2.6897 1.5700 9.6115 47 1 1.1290 -0.3753 10.6324 48 1 -0.3526 -2.3001 12.9216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266141106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:46 Heat of formation + Delta-G solvation = -2.762106 kcal Electronic energy + Delta-G solvation = -28364.484334 eV Core-core repulsion = 24262.892098 eV Total energy + Delta-G solvation = -4101.592235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78838 -39.55828 -38.46515 -37.11962 -35.26888 -34.47538 -33.88269 -31.95251 -31.23830 -30.83122 -30.02144 -28.75589 -26.32799 -24.73514 -24.10200 -23.65236 -22.60768 -21.40283 -20.93522 -19.98117 -19.23637 -18.25027 -17.86816 -16.50004 -16.31737 -15.99259 -15.76685 -15.66057 -15.20509 -14.93767 -14.66639 -14.55380 -14.47311 -14.07813 -13.95545 -13.71938 -13.35795 -13.25639 -13.08305 -12.83520 -12.74224 -12.32504 -12.17821 -11.96301 -11.59855 -11.56752 -11.53032 -11.37027 -11.25877 -11.07441 -11.04607 -10.90154 -10.33360 -10.21515 -10.19159 -9.53212 -9.50674 -9.33860 -9.13647 -8.45854 -8.04409 -7.94334 -6.40622 -3.81179 1.02687 2.11480 2.35082 3.00519 3.02676 3.17290 3.27802 3.35250 3.92414 4.09239 4.23741 4.31998 4.34921 4.66345 4.71222 4.74147 4.88175 4.95116 5.00864 5.08095 5.17220 5.25620 5.27333 5.28761 5.35137 5.39108 5.42103 5.51572 5.58790 5.65670 5.75183 5.80942 5.83930 5.96439 6.05780 6.07983 6.17573 6.18864 6.29249 6.30150 6.46785 7.19959 7.23800 7.56720 7.65727 7.78753 7.95644 8.07968 8.62622 9.19430 9.55880 10.07310 10.77234 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.002091 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.044939 B =13387.950060 C =15090.175246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.253 5.253 4 N -0.279 5.279 5 C -0.006 4.006 6 C -0.193 4.193 7 C -0.034 4.034 8 C 0.586 3.414 9 O -0.533 6.533 10 N -0.713 5.713 11 C 0.124 3.876 12 C -0.116 4.116 13 C 0.085 3.915 14 H 0.080 0.920 15 C -0.183 4.183 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.186 0.814 35 H 0.160 0.840 36 H 0.400 0.600 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.350 0.650 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.598 9.243 -20.303 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.041 5.041 4 N -0.112 5.112 5 C -0.181 4.181 6 C -0.222 4.222 7 C -0.163 4.163 8 C 0.371 3.629 9 O -0.410 6.410 10 N -0.364 5.364 11 C 0.001 3.999 12 C -0.154 4.154 13 C -0.026 4.026 14 H 0.098 0.902 15 C -0.242 4.242 16 N -0.295 5.295 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.203 0.797 35 H 0.177 0.823 36 H 0.235 0.765 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.170 0.830 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.113 7.434 -21.678 25.470 hybrid contribution 0.436 0.991 1.960 2.239 sum 11.549 8.425 -19.719 24.356 Atomic orbital electron populations 1.22078 0.93217 1.03725 1.03159 1.22244 0.96511 0.76334 1.05831 1.45901 1.43923 1.12390 1.01875 1.73202 1.18753 1.05221 1.14027 1.23560 1.04247 0.95275 0.95024 1.22234 1.07552 0.96745 0.95708 1.21505 1.10508 0.94276 0.90025 1.16910 0.78338 0.84645 0.83023 1.90829 1.44844 1.21514 1.83786 1.45723 1.64589 1.17845 1.08273 1.21474 1.03925 0.96514 0.77977 1.21757 1.00735 0.98581 0.94344 1.21500 0.89824 0.98231 0.93089 0.90173 1.22511 1.01139 0.99974 1.00556 1.60206 1.16382 1.14272 1.38663 1.21698 0.96591 0.96748 0.93179 1.19830 0.89795 0.84325 0.83423 1.90528 1.46498 1.50755 1.58914 1.41873 1.09636 1.36146 1.32484 1.19747 0.85132 1.21178 1.16646 0.87893 1.25264 0.99625 0.96325 0.96827 1.69622 1.31691 1.26218 1.26834 0.85804 0.82032 0.78190 0.78344 1.19225 1.20736 1.20807 0.91406 0.91902 0.89935 0.88537 0.86353 0.79746 0.82282 0.76527 0.88845 0.91690 0.91363 0.90968 0.92275 0.92315 0.92196 0.82990 0.89617 0.93848 0.77489 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.24 37.16 0.38 -1.12 16 2 C 0.11 1.06 6.58 -4.04 -0.03 1.04 16 3 N -0.25 -2.85 3.35 -57.14 -0.19 -3.04 16 4 N -0.28 -3.11 11.90 30.59 0.36 -2.74 16 5 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 6 C -0.19 -1.63 10.50 -38.98 -0.41 -2.04 16 7 C -0.03 -0.38 6.96 -82.05 -0.57 -0.95 16 8 C 0.59 7.24 7.78 -12.64 -0.10 7.14 16 9 O -0.53 -8.34 14.68 5.25 0.08 -8.27 16 10 N -0.71 -6.97 5.54 -61.47 -0.34 -7.31 16 11 C 0.12 1.38 5.57 -4.04 -0.02 1.36 16 12 C -0.12 -1.01 5.01 -26.73 -0.13 -1.15 16 13 C 0.08 0.90 2.59 -67.71 -0.18 0.72 16 14 H 0.08 0.84 7.80 -51.93 -0.40 0.43 16 15 C -0.18 -1.67 9.16 37.16 0.34 -1.33 16 16 N -0.66 -9.87 5.33 -107.99 -0.58 -10.44 16 17 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 18 C 0.44 10.34 7.82 -10.99 -0.09 10.26 16 19 O -0.58 -15.80 15.78 5.54 0.09 -15.71 16 20 N -0.56 -14.34 5.29 -10.97 -0.06 -14.40 16 21 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 25 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.12 1.25 6.20 -51.93 -0.32 0.93 16 34 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.16 0.81 7.59 -52.49 -0.40 0.41 16 36 H 0.40 2.66 7.51 -40.82 -0.31 2.35 16 37 H 0.09 1.40 7.75 -51.93 -0.40 0.99 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 42 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.35 5.46 8.17 -39.30 -0.32 5.14 16 45 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 46 H 0.04 0.66 7.44 -51.93 -0.39 0.28 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -34.72 403.82 -7.54 -42.26 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -7.41 Total: 14.84 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -1.28 Total: 6.47 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.08 Total: -61.89 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.16 Total: -23.98 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.72 -7.54 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266141106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.498 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds