Wall clock time and date at job start Tue Mar 31 2020 20:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47126 * 2 1 4 4 N 1.28441 * 125.19186 * 274.50909 * 3 2 1 5 5 C 1.30868 * 110.92695 * 180.16380 * 4 3 2 6 6 C 1.39669 * 107.86296 * 359.60970 * 5 4 3 7 7 C 1.36600 * 125.18891 * 94.24198 * 3 2 1 8 8 C 1.47168 * 126.88726 * 359.97438 * 7 3 2 9 9 O 1.21631 * 119.99502 * 354.41921 * 8 7 3 10 10 N 1.34774 * 120.00023 * 174.41526 * 8 7 3 11 11 C 1.46495 * 119.99903 * 185.11524 * 10 8 7 12 12 C 1.52999 * 109.47202 * 180.02562 * 11 10 8 13 13 C 1.53008 * 109.47265 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.47144 * 54.99759 * 13 12 11 15 15 C 1.52998 * 109.47121 * 174.99947 * 13 12 11 16 16 N 1.46903 * 109.46845 * 294.99729 * 13 12 11 17 17 C 1.46901 * 110.99753 * 154.99755 * 16 13 12 18 18 C 1.50698 * 109.47387 * 180.02562 * 17 16 13 19 19 O 1.21297 * 119.99679 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00496 * 180.02562 * 18 17 16 21 21 C 1.37093 * 120.00043 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00122 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99847 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99985 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00048 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47386 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47167 * 119.99983 * 25 23 21 28 28 H 1.48498 * 109.47159 * 239.99429 * 25 23 21 29 29 H 1.08995 * 109.47091 * 300.00246 * 1 2 3 30 30 H 1.08996 * 109.46685 * 60.00063 * 1 2 3 31 31 H 1.08995 * 109.46862 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47091 * 239.99754 * 2 1 3 33 33 H 1.09003 * 109.46683 * 119.99523 * 2 1 3 34 34 H 1.07997 * 126.06546 * 179.87664 * 5 4 3 35 35 H 1.07997 * 127.31806 * 180.25097 * 6 5 4 36 36 H 0.97004 * 119.99876 * 5.11012 * 10 8 7 37 37 H 1.09005 * 109.46722 * 299.99582 * 11 10 8 38 38 H 1.09001 * 109.47556 * 59.99675 * 11 10 8 39 39 H 1.08997 * 109.47058 * 299.99740 * 12 11 10 40 40 H 1.08996 * 109.47427 * 60.00089 * 12 11 10 41 41 H 1.09001 * 109.47266 * 59.99886 * 15 13 12 42 42 H 1.08996 * 109.46767 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.46948 * 299.99761 * 15 13 12 44 44 H 1.00894 * 111.00246 * 278.95300 * 16 13 12 45 45 H 1.09002 * 109.47094 * 300.00083 * 17 16 13 46 46 H 1.08997 * 109.47257 * 60.00117 * 17 16 13 47 47 H 0.97003 * 119.99443 * 359.97438 * 20 18 17 48 48 H 0.96999 * 119.99950 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1873 2.1066 -1.0464 5 6 2.6373 3.2928 -0.7252 6 6 2.7637 3.3411 0.6649 7 6 2.3586 2.0958 1.1133 8 6 2.3048 1.6345 2.5098 9 8 1.8310 0.5455 2.7726 10 7 2.7806 2.4185 3.4973 11 6 2.8304 1.9155 4.8723 12 6 3.4068 2.9956 5.7899 13 6 3.4582 2.4705 7.2262 14 1 4.0173 1.5351 7.2512 15 6 4.1483 3.5013 8.1217 16 7 2.0914 2.2372 7.7114 17 6 2.0766 1.2272 8.7780 18 6 0.6611 1.0146 9.2491 19 8 -0.2464 1.6425 8.7454 20 7 0.4033 0.1270 10.2300 21 6 -0.8845 -0.0659 10.6588 22 1 -1.6923 0.4936 10.2110 23 6 -1.1502 -0.9807 11.6704 24 7 -0.1671 -1.6613 12.2157 25 14 -2.9049 -1.2441 12.2543 26 1 -3.8201 -0.3632 11.4851 27 1 -3.2891 -2.6630 12.0431 28 1 -3.0004 -0.9154 13.6993 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8658 4.0937 -1.4127 35 1 3.1046 4.1733 1.2628 36 1 3.0901 3.3159 3.2976 37 1 1.8236 1.6588 5.2019 38 1 3.4630 1.0288 4.9122 39 1 4.4135 3.2528 5.4606 40 1 2.7738 3.8820 5.7501 41 1 3.5893 4.4367 8.0966 42 1 4.1845 3.1274 9.1449 43 1 5.1625 3.6743 7.7616 44 1 1.6663 3.0978 8.0224 45 1 2.4765 0.2883 8.3949 46 1 2.6897 1.5700 9.6115 47 1 1.1290 -0.3753 10.6324 48 1 -0.3526 -2.3001 12.9216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266141106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:46 Heat of formation + Delta-G solvation = -29.992255 kcal Electronic energy + Delta-G solvation = -28365.665122 eV Core-core repulsion = 24262.892098 eV Total energy + Delta-G solvation = -4102.773023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.52901 -40.52236 -40.17378 -38.29564 -36.24484 -35.88813 -35.27282 -33.33851 -32.86823 -31.80900 -30.75303 -29.58996 -27.94710 -25.89127 -25.33909 -24.59940 -23.41836 -22.20508 -21.81081 -21.14859 -20.74776 -19.91951 -19.04379 -17.74835 -17.33933 -17.11348 -16.83427 -16.64601 -16.50331 -16.28666 -15.90204 -15.66543 -15.52985 -15.33748 -15.18370 -14.75107 -14.49090 -14.23060 -14.09495 -13.94297 -13.54820 -13.54146 -13.49555 -13.09637 -13.05832 -12.84689 -12.65282 -12.42034 -12.35496 -12.21516 -12.17002 -12.10007 -11.82542 -11.70726 -11.51779 -11.16352 -10.39989 -10.34168 -10.07699 -10.01704 -9.96533 -9.22591 -8.47557 -5.96030 0.21841 1.35432 1.37387 1.40461 1.54777 1.66222 2.05622 2.15201 2.18544 2.28511 2.96643 3.19873 3.55502 3.56034 3.57129 3.88814 3.96871 4.07438 4.13917 4.20005 4.24669 4.26996 4.35865 4.47613 4.51269 4.55778 4.59889 4.63430 4.64865 4.77249 4.81866 4.87618 4.93432 5.03754 5.06693 5.22324 5.24767 5.34321 5.40403 5.41863 5.57013 5.74291 5.92671 6.16215 6.41951 6.49266 6.59929 7.04426 7.12385 7.12537 7.56363 8.11966 8.70116 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.002091 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.044939 B =13387.950060 C =15090.175246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.108 3.892 3 N -0.267 5.267 4 N -0.302 5.302 5 C -0.006 4.006 6 C -0.175 4.175 7 C -0.062 4.062 8 C 0.581 3.419 9 O -0.577 6.577 10 N -0.696 5.696 11 C 0.130 3.870 12 C -0.103 4.103 13 C 0.083 3.917 14 H 0.084 0.916 15 C -0.176 4.176 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.015 4.015 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.269 1.269 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.219 0.781 35 H 0.196 0.804 36 H 0.418 0.582 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.345 0.655 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.426 10.794 -20.905 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.011 4.011 3 N -0.055 5.055 4 N -0.135 5.135 5 C -0.182 4.182 6 C -0.204 4.204 7 C -0.190 4.190 8 C 0.367 3.633 9 O -0.457 6.457 10 N -0.348 5.348 11 C 0.006 3.994 12 C -0.142 4.142 13 C -0.027 4.027 14 H 0.102 0.898 15 C -0.235 4.235 16 N -0.311 5.311 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.236 0.764 35 H 0.213 0.787 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.164 0.836 45 H 0.117 0.883 46 H 0.085 0.915 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.998 9.016 -22.277 27.323 hybrid contribution -0.086 0.572 2.074 2.153 sum 12.912 9.588 -20.203 25.823 Atomic orbital electron populations 1.22013 0.93165 1.04405 1.01804 1.22259 0.96551 0.76393 1.05943 1.46028 1.44675 1.12792 1.02044 1.73185 1.19580 1.06341 1.14360 1.24230 1.02903 0.95178 0.95859 1.22718 1.05369 0.96337 0.95939 1.21573 1.12443 0.95642 0.89344 1.17233 0.77763 0.84255 0.84035 1.90804 1.46918 1.23496 1.84526 1.45552 1.63594 1.18358 1.07289 1.21295 1.01465 0.97591 0.79018 1.21707 1.02638 0.97414 0.92395 1.21644 0.87528 0.99283 0.94227 0.89768 1.22430 1.02304 0.99200 0.99542 1.60216 1.19540 1.13596 1.37712 1.21528 0.92018 0.98344 0.94679 1.20990 0.92178 0.82498 0.81895 1.90492 1.48737 1.51903 1.59880 1.41953 1.08966 1.36997 1.33329 1.19679 0.85898 1.22474 1.18126 0.90495 1.26042 1.03587 0.95476 0.96304 1.69677 1.33250 1.26245 1.26967 0.84879 0.77143 0.78210 0.78148 1.19913 1.19674 1.19400 0.94087 0.91631 0.88321 0.86690 0.87859 0.76423 0.78684 0.74378 0.93168 0.92313 0.87738 0.90500 0.92104 0.93294 0.89711 0.83638 0.88298 0.91462 0.76994 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.24 71.98 0.74 -2.28 16 2 C 0.11 2.17 6.58 86.38 0.57 2.74 16 3 N -0.27 -6.00 3.35 -334.68 -1.12 -7.12 16 4 N -0.30 -6.39 11.90 -57.14 -0.68 -7.07 16 5 C -0.01 -0.10 12.03 85.18 1.02 0.93 16 6 C -0.17 -2.50 10.50 22.66 0.24 -2.26 16 7 C -0.06 -1.33 6.96 40.79 0.28 -1.05 16 8 C 0.58 14.55 7.78 86.59 0.67 15.22 16 9 O -0.58 -19.19 14.68 -4.13 -0.06 -19.25 16 10 N -0.70 -12.91 5.54 -466.63 -2.59 -15.50 16 11 C 0.13 2.83 5.57 86.38 0.48 3.31 16 12 C -0.10 -1.55 5.01 30.60 0.15 -1.40 16 13 C 0.08 1.59 2.59 44.92 0.12 1.70 16 14 H 0.08 1.57 7.80 -2.39 -0.02 1.55 16 15 C -0.18 -2.69 9.16 71.98 0.66 -2.03 16 16 N -0.68 -19.89 5.33 -495.56 -2.64 -22.53 16 17 C 0.07 2.24 5.96 85.56 0.51 2.76 16 18 C 0.44 21.02 7.82 87.66 0.69 21.70 16 19 O -0.62 -35.09 15.78 -3.08 -0.05 -35.14 16 20 N -0.58 -30.00 5.29 -306.99 -1.62 -31.62 16 21 C -0.33 -19.23 9.68 84.04 0.81 -18.41 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 25 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.10 2.38 6.20 -2.39 -0.01 2.37 16 34 H 0.22 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.20 1.15 7.59 -2.91 -0.02 1.12 16 36 H 0.42 4.46 7.51 -92.70 -0.70 3.76 16 37 H 0.05 1.56 7.75 -2.38 -0.02 1.54 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 42 H 0.05 0.86 7.45 -2.39 -0.02 0.84 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.34 10.69 8.17 -89.70 -0.73 9.96 16 45 H 0.10 3.09 8.06 -2.39 -0.02 3.07 16 46 H 0.07 1.96 7.44 -2.39 -0.02 1.94 16 47 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 48 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -79.37 403.82 -0.20 -79.56 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -1.16 Total: 42.28 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 7.41 Total: 20.61 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -8.37 Total: -133.82 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.11 Total: -54.39 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -79.37 -0.20 -79.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266141106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.570 kcal (2) G-P(sol) polarization free energy of solvation -79.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds