Wall clock time and date at job start Tue Mar 31 2020 20:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47126 * 2 1 4 4 N 1.28441 * 125.19186 * 274.50909 * 3 2 1 5 5 C 1.30868 * 110.92695 * 180.16380 * 4 3 2 6 6 C 1.39669 * 107.86296 * 359.60970 * 5 4 3 7 7 C 1.36600 * 125.18891 * 94.24198 * 3 2 1 8 8 C 1.47168 * 126.88726 * 359.97438 * 7 3 2 9 9 O 1.21631 * 119.99502 * 354.41921 * 8 7 3 10 10 N 1.34774 * 120.00023 * 174.41526 * 8 7 3 11 11 C 1.46495 * 119.99903 * 185.11524 * 10 8 7 12 12 C 1.52999 * 109.47202 * 180.02562 * 11 10 8 13 13 C 1.53008 * 109.47265 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.46732 * 304.99869 * 13 12 11 15 15 C 1.52995 * 109.47111 * 185.00171 * 13 12 11 16 16 N 1.46897 * 109.46939 * 64.99498 * 13 12 11 17 17 C 1.46896 * 111.00071 * 204.99711 * 16 13 12 18 18 C 1.50700 * 109.47275 * 180.02562 * 17 16 13 19 19 O 1.21295 * 120.00046 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99843 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99662 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00058 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99942 * 180.02562 * 21 20 18 24 24 N 1.31406 * 119.99780 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99903 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47235 * 89.99995 * 25 23 21 27 27 H 1.48499 * 109.47408 * 209.99885 * 25 23 21 28 28 H 1.48501 * 109.47350 * 330.00194 * 25 23 21 29 29 H 1.08995 * 109.47091 * 300.00246 * 1 2 3 30 30 H 1.08996 * 109.46685 * 60.00063 * 1 2 3 31 31 H 1.08995 * 109.46862 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47091 * 239.99754 * 2 1 3 33 33 H 1.09003 * 109.46683 * 119.99523 * 2 1 3 34 34 H 1.07997 * 126.06546 * 179.87664 * 5 4 3 35 35 H 1.07997 * 127.31806 * 180.25097 * 6 5 4 36 36 H 0.97004 * 119.99876 * 5.11012 * 10 8 7 37 37 H 1.09005 * 109.46722 * 299.99582 * 11 10 8 38 38 H 1.09001 * 109.47556 * 59.99675 * 11 10 8 39 39 H 1.08997 * 109.47058 * 299.99740 * 12 11 10 40 40 H 1.08996 * 109.47427 * 60.00089 * 12 11 10 41 41 H 1.08998 * 109.47319 * 60.00083 * 15 13 12 42 42 H 1.09003 * 109.47111 * 179.97438 * 15 13 12 43 43 H 1.09004 * 109.47235 * 299.99884 * 15 13 12 44 44 H 1.00901 * 110.99414 * 81.05260 * 16 13 12 45 45 H 1.08997 * 109.47738 * 300.00836 * 17 16 13 46 46 H 1.09005 * 109.46860 * 60.00849 * 17 16 13 47 47 H 0.96997 * 120.00472 * 0.02562 * 20 18 17 48 48 H 0.97005 * 119.99608 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1873 2.1066 -1.0464 5 6 2.6373 3.2928 -0.7252 6 6 2.7637 3.3411 0.6649 7 6 2.3586 2.0958 1.1133 8 6 2.3048 1.6345 2.5098 9 8 1.8310 0.5455 2.7726 10 7 2.7806 2.4185 3.4973 11 6 2.8304 1.9155 4.8723 12 6 3.4068 2.9956 5.7899 13 6 3.4582 2.4705 7.2262 14 1 2.4664 2.1307 7.5244 15 6 3.9167 3.5902 8.1625 16 7 4.4039 1.3490 7.3039 17 6 4.0749 0.4598 8.4259 18 6 5.0646 -0.6756 8.4740 19 8 5.9566 -0.7377 7.6544 20 7 4.9586 -1.6221 9.4276 21 6 5.8593 -2.6547 9.4716 22 1 6.6541 -2.7095 8.7424 23 6 5.7497 -3.6308 10.4545 24 7 6.6127 -4.6209 10.4963 25 14 4.3747 -3.5364 11.7153 26 1 3.1859 -4.2671 11.2070 27 1 4.8272 -4.1525 12.9885 28 1 4.0176 -2.1147 11.9529 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8658 4.0937 -1.4127 35 1 3.1046 4.1733 1.2628 36 1 3.0901 3.3159 3.2976 37 1 1.8236 1.6588 5.2019 38 1 3.4630 1.0288 4.9122 39 1 4.4135 3.2528 5.4606 40 1 2.7738 3.8820 5.7501 41 1 3.2149 4.4223 8.1048 42 1 3.9528 3.2163 9.1857 43 1 4.9085 3.9301 7.8642 44 1 5.3540 1.6815 7.3727 45 1 4.1202 1.0206 9.3595 46 1 3.0697 0.0605 8.2904 47 1 4.2450 -1.5727 10.0828 48 1 6.5360 -5.3025 11.1822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266141107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:49 Heat of formation + Delta-G solvation = 4.350872 kcal Electronic energy + Delta-G solvation = -28407.903044 eV Core-core repulsion = 24306.619251 eV Total energy + Delta-G solvation = -4101.283794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.79467 -39.59042 -38.63807 -37.23408 -35.30526 -34.50487 -33.94253 -32.02976 -31.62958 -30.94504 -30.04418 -28.81558 -26.51870 -24.75540 -24.05428 -23.56498 -22.62501 -21.42273 -21.00088 -20.00701 -19.37022 -18.42488 -18.17550 -16.53238 -16.29127 -16.10350 -15.81861 -15.62122 -15.34103 -14.97451 -14.81499 -14.72191 -14.49928 -14.10619 -14.08006 -13.44463 -13.37480 -13.26356 -13.16432 -12.86669 -12.81582 -12.38594 -12.36245 -12.22201 -11.94444 -11.70961 -11.60576 -11.45019 -11.32722 -11.15329 -11.08019 -10.97406 -10.59481 -10.22504 -9.97151 -9.56758 -9.54557 -9.34699 -9.16445 -8.59857 -8.19060 -8.13517 -6.30554 -3.81878 1.01594 2.10396 2.34636 2.95179 3.02147 3.04022 3.07314 3.15168 3.74656 4.05880 4.11150 4.23491 4.32528 4.59871 4.68424 4.72569 4.81070 4.86707 4.93252 4.99844 5.05642 5.21560 5.22328 5.24433 5.30652 5.33876 5.40332 5.46158 5.55588 5.56594 5.65289 5.68733 5.76152 5.84026 5.91250 5.98040 6.03479 6.12889 6.16720 6.26139 6.46175 7.07947 7.19579 7.55490 7.58937 7.77996 7.93027 8.15235 8.60303 8.95678 9.43096 9.83382 10.82620 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.002102 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.579830 B =13320.583174 C =14558.155061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.252 5.252 4 N -0.279 5.279 5 C -0.005 4.005 6 C -0.193 4.193 7 C -0.035 4.035 8 C 0.587 3.413 9 O -0.534 6.534 10 N -0.713 5.713 11 C 0.124 3.876 12 C -0.116 4.116 13 C 0.085 3.915 14 H 0.080 0.920 15 C -0.183 4.183 16 N -0.663 5.663 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.186 0.814 35 H 0.160 0.840 36 H 0.401 0.599 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.352 0.648 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.005 20.138 -14.823 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.040 5.040 4 N -0.112 5.112 5 C -0.181 4.181 6 C -0.222 4.222 7 C -0.164 4.164 8 C 0.372 3.628 9 O -0.411 6.411 10 N -0.365 5.365 11 C 0.001 3.999 12 C -0.154 4.154 13 C -0.026 4.026 14 H 0.098 0.902 15 C -0.242 4.242 16 N -0.295 5.295 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.203 0.797 35 H 0.177 0.823 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.172 0.828 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.334 17.863 -16.439 27.697 hybrid contribution -0.326 1.455 2.479 2.893 sum -13.659 19.318 -13.960 27.470 Atomic orbital electron populations 1.22065 0.93359 1.03638 1.02933 1.22258 0.96340 0.76369 1.06097 1.45894 1.43918 1.12361 1.01863 1.73206 1.18801 1.05153 1.13995 1.23562 1.04239 0.95278 0.95012 1.22229 1.07466 0.96805 0.95729 1.21492 1.10625 0.94221 0.90021 1.16904 0.78357 0.84492 0.83034 1.90819 1.45205 1.21277 1.83806 1.45716 1.64590 1.17856 1.08293 1.21471 1.01909 0.98416 0.78083 1.21757 1.01777 0.97313 0.94599 1.21504 0.97291 0.90139 0.93691 0.90155 1.22514 1.01942 0.99457 1.00299 1.60204 1.06903 1.17817 1.44623 1.21736 0.99748 0.94365 0.92670 1.19725 0.87980 0.84759 0.83995 1.90569 1.36327 1.77180 1.40556 1.42211 1.28756 1.24043 1.28051 1.19430 1.08997 0.99897 1.14987 0.86300 1.25044 0.97585 0.95764 0.97834 1.69623 1.35481 1.12402 1.34645 0.86666 0.82460 0.78357 0.81854 1.19580 1.20215 1.19562 0.91649 0.91925 0.89958 0.88418 0.86227 0.79735 0.82292 0.76504 0.91598 0.88965 0.90891 0.91310 0.92136 0.92378 0.92172 0.82803 0.93731 0.89465 0.79717 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.11 1.06 6.58 -4.04 -0.03 1.03 16 3 N -0.25 -2.84 3.35 -57.14 -0.19 -3.04 16 4 N -0.28 -3.11 11.90 30.59 0.36 -2.74 16 5 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 6 C -0.19 -1.62 10.50 -38.98 -0.41 -2.02 16 7 C -0.03 -0.38 6.96 -82.05 -0.57 -0.95 16 8 C 0.59 7.10 7.78 -12.64 -0.10 7.01 16 9 O -0.53 -8.15 14.68 5.25 0.08 -8.07 16 10 N -0.71 -6.74 5.54 -61.47 -0.34 -7.08 16 11 C 0.12 1.32 5.57 -4.04 -0.02 1.30 16 12 C -0.12 -0.95 5.01 -26.73 -0.13 -1.09 16 13 C 0.08 0.83 2.59 -67.71 -0.18 0.66 16 14 H 0.08 0.77 7.80 -51.93 -0.40 0.36 16 15 C -0.18 -1.54 9.16 37.16 0.34 -1.20 16 16 N -0.66 -9.30 5.33 -107.99 -0.58 -9.87 16 17 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 18 C 0.45 10.08 7.82 -10.98 -0.09 9.99 16 19 O -0.56 -15.04 15.78 5.54 0.09 -14.95 16 20 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 21 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 22 H 0.12 3.86 7.39 -52.48 -0.39 3.48 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16 25 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 1.31 6.20 -51.93 -0.32 0.99 16 34 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.16 0.78 7.59 -52.49 -0.40 0.38 16 36 H 0.40 2.54 7.51 -40.82 -0.31 2.23 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.31 7.75 -51.93 -0.40 0.91 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 43 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 44 H 0.35 5.20 8.17 -39.29 -0.32 4.88 16 45 H 0.04 0.61 7.44 -51.93 -0.39 0.23 16 46 H 0.09 1.25 8.06 -51.93 -0.42 0.83 16 47 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -35.92 400.70 -7.19 -43.11 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -7.36 Total: 14.68 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.29 Total: 6.43 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.02 Total: -61.94 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.16 Total: -23.02 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.92 -7.19 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266141107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.463 kcal (2) G-P(sol) polarization free energy of solvation -35.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds