Wall clock time and date at job start Tue Mar 31 2020 19:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52998 * 109.47705 * 174.99884 * 4 2 1 6 6 N 1.46500 * 109.47694 * 179.97438 * 5 4 2 7 7 C 1.34769 * 120.00106 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00487 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99898 * 179.97438 * 7 6 5 10 10 N 1.46505 * 109.47359 * 180.02562 * 9 7 6 11 11 N 1.40307 * 126.32442 * 270.03286 * 10 9 7 12 12 C 1.28875 * 108.11680 * 180.50684 * 11 10 9 13 13 N 1.38014 * 108.82338 * 0.54431 * 12 11 10 14 14 C 1.34322 * 108.31957 * 358.31244 * 13 12 11 15 15 O 1.21813 * 126.33446 * 182.03631 * 14 13 12 16 16 C 1.46717 * 124.17843 * 177.60459 * 13 12 11 17 17 C 1.53291 * 108.65861 * 19.33607 * 16 13 12 18 18 C 1.53237 * 109.35632 * 308.21249 * 17 16 13 19 19 C 1.51124 * 127.46277 * 180.93525 * 12 11 10 20 20 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 21 21 C 1.36940 * 120.00565 * 275.00309 * 20 2 1 22 22 H 1.08004 * 119.99402 * 359.97438 * 21 20 2 23 23 C 1.38815 * 120.00150 * 179.97438 * 21 20 2 24 24 N 1.31618 * 120.00111 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99847 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47120 * 59.99555 * 25 23 21 27 27 H 1.48500 * 109.47078 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46925 * 300.00019 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09001 * 109.46974 * 300.00556 * 5 4 2 35 35 H 1.09000 * 109.46929 * 59.99736 * 5 4 2 36 36 H 0.97003 * 119.99724 * 0.02562 * 6 5 4 37 37 H 1.09001 * 109.47732 * 300.00854 * 9 7 6 38 38 H 1.09002 * 109.46751 * 60.01007 * 9 7 6 39 39 H 1.08994 * 109.60986 * 259.58047 * 16 13 12 40 40 H 1.09000 * 109.60176 * 139.08296 * 16 13 12 41 41 H 1.08997 * 109.48597 * 188.25197 * 17 16 13 42 42 H 1.08992 * 109.49432 * 68.18108 * 17 16 13 43 43 H 1.08993 * 109.54999 * 310.86606 * 18 17 16 44 44 H 1.09011 * 109.61654 * 190.63575 * 18 17 16 45 45 H 1.08998 * 109.74605 * 317.33169 * 19 12 11 46 46 H 1.09001 * 109.74522 * 78.01301 * 19 12 11 47 47 H 0.97006 * 119.99921 * 94.99902 * 20 2 1 48 48 H 0.96997 * 119.99796 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 7 4.0533 -1.3045 -2.5094 7 6 5.3741 -1.3398 -2.7750 8 8 6.1585 -0.7999 -2.0239 9 6 5.8766 -2.0513 -4.0048 10 7 7.3367 -1.9478 -4.0666 11 7 8.0720 -0.9305 -4.6935 12 6 9.3251 -1.1912 -4.5436 13 7 9.4534 -2.3707 -3.8385 14 6 8.2237 -2.8112 -3.5253 15 8 7.9573 -3.8063 -2.8752 16 6 10.7372 -3.0070 -3.5231 17 6 11.8487 -1.9593 -3.6526 18 6 11.7422 -1.2720 -5.0180 19 6 10.4989 -0.3726 -5.0294 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8926 1.0406 2.4241 23 6 2.6113 -0.6619 3.5094 24 7 2.9234 -1.9392 3.4505 25 14 2.7890 0.2698 5.1186 26 1 1.4665 0.8066 5.5284 27 1 3.2981 -0.6485 6.1687 28 1 3.7443 1.3923 4.9378 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3573 35 1 3.9995 -1.0727 -0.4259 36 1 3.4260 -1.7360 -3.1104 37 1 5.5887 -3.1017 -3.9601 38 1 5.4417 -1.5928 -4.8929 39 1 10.9216 -3.8240 -4.2205 40 1 10.7140 -3.3915 -2.5034 41 1 12.8197 -2.4468 -3.5656 42 1 11.7422 -1.2165 -2.8622 43 1 11.6542 -2.0260 -5.8000 44 1 12.6318 -0.6667 -5.1934 45 1 10.3079 -0.0207 -6.0432 46 1 10.6532 0.4792 -4.3669 47 1 2.2490 -1.6317 1.1527 48 1 3.2468 -2.3964 4.2425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266182758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:34 Heat of formation + Delta-G solvation = 11.429102 kcal Electronic energy + Delta-G solvation = -29047.294101 eV Core-core repulsion = 24946.317242 eV Total energy + Delta-G solvation = -4100.976858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.70781 -39.51977 -37.85159 -36.98463 -36.51673 -34.34280 -33.74040 -32.76281 -32.19724 -29.78317 -29.06073 -28.38387 -27.48285 -24.81650 -23.77680 -22.98466 -22.66731 -21.74175 -20.60161 -20.08364 -19.65272 -17.63142 -17.52637 -17.13046 -16.56438 -16.32439 -16.01542 -15.39328 -15.27880 -14.79812 -14.77992 -14.70530 -14.59740 -14.03305 -13.74233 -13.66182 -13.43037 -13.17937 -13.13641 -12.45883 -12.42579 -12.15159 -12.10342 -12.00623 -11.62281 -11.51448 -11.50346 -11.45271 -11.03530 -10.87755 -10.70263 -10.61151 -10.48952 -10.29464 -10.25343 -9.97400 -9.62219 -9.57666 -8.88530 -8.78975 -8.59562 -6.90512 -5.69874 -2.98779 1.51899 1.77865 2.59687 2.70411 2.78679 3.37182 3.48980 3.53297 3.54354 3.90614 4.09900 4.19322 4.28948 4.57016 4.65086 4.75280 4.80163 4.87251 4.93634 5.01368 5.16269 5.21806 5.27079 5.33037 5.33670 5.43224 5.45548 5.60554 5.63568 5.70766 5.74046 5.91414 5.96219 6.10180 6.20973 6.35731 6.38141 6.43299 6.50485 6.69724 6.74506 6.89942 7.09684 7.50368 7.60874 7.75747 7.96991 8.34310 8.48334 9.59413 10.16367 10.50744 11.52691 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.002320 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.290910 B =12067.865122 C =13195.437389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.725 5.725 7 C 0.491 3.509 8 O -0.522 6.522 9 C 0.144 3.856 10 N -0.439 5.439 11 N -0.269 5.269 12 C 0.277 3.723 13 N -0.556 5.556 14 C 0.657 3.343 15 O -0.550 6.550 16 C 0.131 3.869 17 C -0.138 4.138 18 C -0.124 4.124 19 C -0.040 4.040 20 N -0.723 5.723 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.397 0.603 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.592 0.159 -25.294 29.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C 0.001 3.999 6 N -0.377 5.377 7 C 0.274 3.726 8 O -0.397 6.397 9 C 0.019 3.981 10 N -0.258 5.258 11 N -0.091 5.091 12 C -0.002 4.002 13 N -0.286 5.286 14 C 0.357 3.643 15 O -0.422 6.422 16 C 0.009 3.991 17 C -0.176 4.176 18 C -0.162 4.162 19 C -0.079 4.079 20 N -0.366 5.366 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.231 0.769 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.226 0.550 -24.472 28.827 hybrid contribution 0.103 -0.573 1.138 1.278 sum 15.328 -0.023 -23.334 27.918 Atomic orbital electron populations 1.22423 0.99121 1.00831 0.99937 1.20151 0.91888 0.95564 0.86048 0.93338 1.22058 0.93764 1.01859 0.99356 1.21464 0.94438 0.97068 0.86956 1.46016 1.06689 1.57231 1.27806 1.20835 0.83016 0.81306 0.87445 1.90766 1.55220 1.44821 1.48880 1.21222 0.74866 1.03508 0.98542 1.48246 1.05343 1.21271 1.50966 1.76711 1.01106 1.11639 1.19636 1.24247 0.94363 0.87560 0.94067 1.46026 1.07850 1.22883 1.51809 1.16458 0.81103 0.84650 0.82133 1.91103 1.80781 1.26828 1.43524 1.21791 0.78729 0.95488 1.03077 1.21994 0.98389 0.98690 0.98530 1.21716 0.97530 0.99378 0.97547 1.20498 0.87589 0.96482 1.03351 1.42449 1.78098 1.10660 1.05344 1.19171 1.36683 0.93789 0.87348 0.91284 1.24734 1.02163 0.95958 0.98056 1.69645 1.50797 1.08641 1.28968 0.86292 0.77694 0.78652 0.83697 1.21347 1.21757 1.21286 0.93516 0.94576 0.92741 0.91530 0.91866 0.91834 0.89751 0.76936 0.85850 0.85867 0.90031 0.88911 0.88856 0.90250 0.90743 0.89403 0.87679 0.87858 0.78276 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.17 3.41 2.89 -67.94 -0.20 3.22 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.05 4.87 -26.74 -0.13 -2.18 16 5 C 0.12 2.15 5.56 -4.04 -0.02 2.12 16 6 N -0.73 -10.09 5.56 -60.30 -0.33 -10.42 16 7 C 0.49 7.92 7.90 -10.99 -0.09 7.83 16 8 O -0.52 -11.32 16.43 5.56 0.09 -11.23 16 9 C 0.14 1.74 6.87 -5.19 -0.04 1.71 16 10 N -0.44 -6.47 3.12 -66.39 -0.21 -6.68 16 11 N -0.27 -3.56 12.51 33.13 0.41 -3.15 16 12 C 0.28 2.92 7.73 -153.75 -1.19 1.73 16 13 N -0.56 -6.69 3.13 -117.55 -0.37 -7.06 16 14 C 0.66 10.64 8.64 -87.03 -0.75 9.89 16 15 O -0.55 -10.72 17.83 5.09 0.09 -10.63 16 16 C 0.13 1.04 6.88 -3.77 -0.03 1.01 16 17 C -0.14 -0.62 5.94 -26.46 -0.16 -0.78 16 18 C -0.12 -0.41 5.96 -26.37 -0.16 -0.56 16 19 C -0.04 -0.21 6.32 -27.44 -0.17 -0.38 16 20 N -0.72 -18.23 4.57 -53.43 -0.24 -18.47 16 21 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 22 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -29.11 13.06 55.49 0.72 -28.38 16 25 Si 0.91 23.20 29.55 -169.99 -5.02 18.17 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.86 7.75 -51.93 -0.40 1.46 16 36 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 37 H 0.12 1.27 8.12 -51.93 -0.42 0.84 16 38 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 43 H 0.07 0.23 8.11 -51.93 -0.42 -0.19 16 44 H 0.09 0.12 8.14 -51.92 -0.42 -0.30 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.38 10.35 7.80 -40.82 -0.32 10.03 16 48 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -40.88 399.97 -9.44 -50.32 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.79 Total: 7.82 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: -2.82 Total: 13.67 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -0.02 Total: -74.16 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.18 Total: -21.86 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -40.88 -9.44 -50.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266182758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.751 kcal (2) G-P(sol) polarization free energy of solvation -40.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds