Wall clock time and date at job start Tue Mar 31 2020 19:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52998 * 109.47705 * 174.99884 * 4 2 1 6 6 N 1.46500 * 109.47694 * 179.97438 * 5 4 2 7 7 C 1.34769 * 120.00106 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00487 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99898 * 179.97438 * 7 6 5 10 10 N 1.46505 * 109.47359 * 180.02562 * 9 7 6 11 11 N 1.40307 * 126.32442 * 270.03286 * 10 9 7 12 12 C 1.28875 * 108.11680 * 180.50684 * 11 10 9 13 13 N 1.38014 * 108.82338 * 0.54431 * 12 11 10 14 14 C 1.34322 * 108.31957 * 358.31244 * 13 12 11 15 15 O 1.21813 * 126.33446 * 182.03631 * 14 13 12 16 16 C 1.46717 * 124.17843 * 177.60459 * 13 12 11 17 17 C 1.53291 * 108.65861 * 19.33607 * 16 13 12 18 18 C 1.53237 * 109.35632 * 308.21249 * 17 16 13 19 19 C 1.51124 * 127.46277 * 180.93525 * 12 11 10 20 20 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 21 21 C 1.36940 * 120.00565 * 275.00309 * 20 2 1 22 22 H 1.08004 * 119.99402 * 359.97438 * 21 20 2 23 23 C 1.38815 * 120.00150 * 179.97438 * 21 20 2 24 24 N 1.31618 * 120.00111 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99847 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47120 * 59.99555 * 25 23 21 27 27 H 1.48500 * 109.47078 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46925 * 300.00019 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09001 * 109.46974 * 300.00556 * 5 4 2 35 35 H 1.09000 * 109.46929 * 59.99736 * 5 4 2 36 36 H 0.97003 * 119.99724 * 0.02562 * 6 5 4 37 37 H 1.09001 * 109.47732 * 300.00854 * 9 7 6 38 38 H 1.09002 * 109.46751 * 60.01007 * 9 7 6 39 39 H 1.08994 * 109.60986 * 259.58047 * 16 13 12 40 40 H 1.09000 * 109.60176 * 139.08296 * 16 13 12 41 41 H 1.08997 * 109.48597 * 188.25197 * 17 16 13 42 42 H 1.08992 * 109.49432 * 68.18108 * 17 16 13 43 43 H 1.08993 * 109.54999 * 310.86606 * 18 17 16 44 44 H 1.09011 * 109.61654 * 190.63575 * 18 17 16 45 45 H 1.08998 * 109.74605 * 317.33169 * 19 12 11 46 46 H 1.09001 * 109.74522 * 78.01301 * 19 12 11 47 47 H 0.97006 * 119.99921 * 94.99902 * 20 2 1 48 48 H 0.96997 * 119.99796 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 7 4.0533 -1.3045 -2.5094 7 6 5.3741 -1.3398 -2.7750 8 8 6.1585 -0.7999 -2.0239 9 6 5.8766 -2.0513 -4.0048 10 7 7.3367 -1.9478 -4.0666 11 7 8.0720 -0.9305 -4.6935 12 6 9.3251 -1.1912 -4.5436 13 7 9.4534 -2.3707 -3.8385 14 6 8.2237 -2.8112 -3.5253 15 8 7.9573 -3.8063 -2.8752 16 6 10.7372 -3.0070 -3.5231 17 6 11.8487 -1.9593 -3.6526 18 6 11.7422 -1.2720 -5.0180 19 6 10.4989 -0.3726 -5.0294 20 7 2.0183 -0.6905 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8926 1.0406 2.4241 23 6 2.6113 -0.6619 3.5094 24 7 2.9234 -1.9392 3.4505 25 14 2.7890 0.2698 5.1186 26 1 1.4665 0.8066 5.5284 27 1 3.2981 -0.6485 6.1687 28 1 3.7443 1.3923 4.9378 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3573 35 1 3.9995 -1.0727 -0.4259 36 1 3.4260 -1.7360 -3.1104 37 1 5.5887 -3.1017 -3.9601 38 1 5.4417 -1.5928 -4.8929 39 1 10.9216 -3.8240 -4.2205 40 1 10.7140 -3.3915 -2.5034 41 1 12.8197 -2.4468 -3.5656 42 1 11.7422 -1.2165 -2.8622 43 1 11.6542 -2.0260 -5.8000 44 1 12.6318 -0.6667 -5.1934 45 1 10.3079 -0.0207 -6.0432 46 1 10.6532 0.4792 -4.3669 47 1 2.2490 -1.6317 1.1527 48 1 3.2468 -2.3964 4.2425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266182758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:33 Heat of formation + Delta-G solvation = -19.399942 kcal Electronic energy + Delta-G solvation = -29048.630948 eV Core-core repulsion = 24946.317242 eV Total energy + Delta-G solvation = -4102.313706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.67230 -40.83096 -38.85801 -38.22424 -37.77643 -35.91485 -34.54316 -34.16784 -33.58864 -31.28386 -30.21258 -29.65859 -28.58127 -25.94312 -25.41095 -24.02430 -23.66225 -22.86019 -21.94564 -21.17138 -20.70070 -19.33797 -18.68186 -18.50786 -17.60223 -17.35547 -17.12975 -16.85930 -16.44344 -16.39248 -15.74197 -15.60974 -15.36394 -15.25627 -15.18709 -14.86658 -14.72183 -14.29143 -14.15849 -14.00576 -13.58928 -13.41466 -13.26025 -13.15022 -12.93688 -12.81549 -12.64881 -12.34710 -12.27185 -12.15677 -12.10146 -11.89944 -11.86551 -11.71720 -11.62480 -11.45878 -11.37887 -10.96916 -10.79155 -10.19801 -9.68210 -9.00537 -7.95117 -5.22208 0.56834 0.91551 1.42189 1.43798 1.46080 1.46345 1.51579 1.92934 2.20295 2.54628 3.19376 3.38834 3.54340 3.64249 3.73460 3.82978 3.89408 3.92715 3.98014 4.07562 4.19429 4.31304 4.34176 4.36836 4.44087 4.53890 4.64416 4.74333 4.77110 4.85120 4.87504 4.88378 4.98422 5.01062 5.04821 5.08957 5.16818 5.18502 5.34006 5.37105 5.38596 5.51075 5.58646 5.60968 6.27608 6.44648 6.52139 6.84217 7.15327 7.33117 8.12084 8.32505 9.28407 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.002320 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.290910 B =12067.865122 C =13195.437389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.042 0.958 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.704 5.704 7 C 0.485 3.515 8 O -0.587 6.587 9 C 0.145 3.855 10 N -0.446 5.446 11 N -0.298 5.298 12 C 0.285 3.715 13 N -0.555 5.555 14 C 0.634 3.366 15 O -0.599 6.599 16 C 0.117 3.883 17 C -0.132 4.132 18 C -0.116 4.116 19 C -0.040 4.040 20 N -0.736 5.736 21 C -0.234 4.234 22 H 0.075 0.925 23 C -0.082 4.082 24 N -0.972 5.972 25 Si 0.969 3.031 26 H -0.274 1.274 27 H -0.298 1.298 28 H -0.282 1.282 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.422 0.578 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.129 0.871 46 H 0.113 0.887 47 H 0.370 0.630 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.003 1.588 -28.373 32.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.060 0.940 4 C -0.152 4.152 5 C 0.010 3.990 6 N -0.358 5.358 7 C 0.271 3.729 8 O -0.466 6.466 9 C 0.021 3.979 10 N -0.265 5.265 11 N -0.120 5.120 12 C 0.007 3.993 13 N -0.283 5.283 14 C 0.333 3.667 15 O -0.477 6.477 16 C -0.003 4.003 17 C -0.169 4.169 18 C -0.154 4.154 19 C -0.080 4.080 20 N -0.377 5.377 21 C -0.366 4.366 22 H 0.093 0.907 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.798 3.202 26 H -0.200 1.200 27 H -0.224 1.224 28 H -0.209 1.209 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.260 0.740 37 H 0.159 0.841 38 H 0.187 0.813 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.137 0.863 45 H 0.147 0.853 46 H 0.131 0.869 47 H 0.202 0.798 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.596 2.027 -27.646 31.806 hybrid contribution 0.003 -0.954 1.997 2.213 sum 15.599 1.072 -25.649 30.039 Atomic orbital electron populations 1.22249 0.96873 1.01086 1.00950 1.20487 0.93335 0.95157 0.85646 0.94011 1.21920 0.91952 1.02230 0.99138 1.21094 0.95657 0.95952 0.86262 1.45756 1.06773 1.56368 1.26880 1.21661 0.82929 0.80353 0.87952 1.90733 1.56883 1.47753 1.51277 1.21505 0.74217 1.04345 0.97879 1.48515 1.06139 1.21283 1.50530 1.76718 1.02268 1.11746 1.21249 1.25394 0.95098 0.86799 0.92032 1.46319 1.07759 1.23208 1.50999 1.16906 0.82704 0.84726 0.82340 1.91035 1.81904 1.28949 1.45790 1.22199 0.78275 0.97342 1.02492 1.22039 0.97970 0.97646 0.99259 1.21754 0.97539 0.99469 0.96590 1.20903 0.86194 0.96306 1.04557 1.42672 1.78426 1.10206 1.06402 1.19584 1.34457 0.94090 0.88450 0.90722 1.25546 1.03339 0.96894 1.01562 1.69815 1.52939 1.10271 1.29310 0.85273 0.78036 0.77243 0.79641 1.19951 1.22433 1.20853 0.93620 0.90347 0.94911 0.90882 0.87073 0.93113 0.95327 0.73962 0.84082 0.81316 0.88282 0.90865 0.86002 0.91305 0.90009 0.86258 0.85291 0.86914 0.79788 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.49 71.98 0.68 -4.37 16 2 C 0.16 6.22 2.89 44.99 0.13 6.35 16 3 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 4 C -0.11 -3.34 4.87 30.59 0.15 -3.19 16 5 C 0.13 4.74 5.56 86.38 0.48 5.22 16 6 N -0.70 -19.14 5.56 -463.07 -2.57 -21.72 16 7 C 0.49 15.91 7.90 87.66 0.69 16.61 16 8 O -0.59 -26.83 16.43 -3.03 -0.05 -26.88 16 9 C 0.15 3.42 6.87 85.63 0.59 4.00 16 10 N -0.45 -13.33 3.12 -481.95 -1.50 -14.83 16 11 N -0.30 -7.74 12.51 -49.10 -0.61 -8.36 16 12 C 0.28 5.78 7.73 137.75 1.06 6.84 16 13 N -0.55 -13.53 3.13 -644.23 -2.02 -15.55 16 14 C 0.63 21.46 8.64 179.09 1.55 23.01 16 15 O -0.60 -24.91 17.83 -4.71 -0.08 -25.00 16 16 C 0.12 1.84 6.88 86.44 0.59 2.44 16 17 C -0.13 -0.91 5.94 30.77 0.18 -0.73 16 18 C -0.12 -0.35 5.96 30.83 0.18 -0.17 16 19 C -0.04 -0.32 6.32 30.14 0.19 -0.13 16 20 N -0.74 -37.90 4.57 -322.95 -1.48 -39.38 16 21 C -0.23 -13.47 9.93 84.03 0.83 -12.64 16 22 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 24 N -0.97 -62.97 13.06 21.65 0.28 -62.69 16 25 Si 0.97 48.79 29.55 68.60 2.03 50.82 16 26 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 27 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 28 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.03 1.33 7.75 -2.39 -0.02 1.32 16 36 H 0.42 7.14 8.47 -92.71 -0.79 6.35 16 37 H 0.14 2.80 8.12 -2.39 -0.02 2.78 16 38 H 0.17 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.07 0.65 8.10 -2.39 -0.02 0.63 16 43 H 0.08 0.20 8.11 -2.39 -0.02 0.18 16 44 H 0.12 -0.26 8.14 -2.38 -0.02 -0.28 16 45 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.37 20.74 7.80 -92.70 -0.72 20.02 16 48 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -97.22 399.97 1.25 -95.97 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.53 Total: 28.83 kcal Atomic # 6 Polarization: 30.99 SS G_CDS: 7.79 Total: 38.77 kcal Atomic # 7 Polarization: -154.62 SS G_CDS: -7.90 Total: -162.52 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -0.13 Total: -51.88 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.82 kcal Total: -97.22 1.25 -95.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266182758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.572 kcal (2) G-P(sol) polarization free energy of solvation -97.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds