Wall clock time and date at job start Tue Mar 31 2020 19:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 N 1.46498 * 109.47272 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00043 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00359 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99941 * 179.97438 * 7 6 5 10 10 N 1.46498 * 109.46996 * 179.97438 * 9 7 6 11 11 N 1.40309 * 126.32569 * 270.02442 * 10 9 7 12 12 C 1.28871 * 108.11652 * 180.51633 * 11 10 9 13 13 N 1.38011 * 108.82388 * 0.54282 * 12 11 10 14 14 C 1.34319 * 108.31836 * 358.31765 * 13 12 11 15 15 O 1.21819 * 126.33011 * 182.03844 * 14 13 12 16 16 C 1.46714 * 124.17568 * 177.61030 * 13 12 11 17 17 C 1.53284 * 108.66558 * 19.33217 * 16 13 12 18 18 C 1.53240 * 109.36037 * 308.22062 * 17 16 13 19 19 C 1.51122 * 127.46279 * 180.94376 * 12 11 10 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 33 33 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 34 34 H 1.09000 * 109.46766 * 299.99484 * 5 4 2 35 35 H 1.08992 * 109.47398 * 59.99391 * 5 4 2 36 36 H 0.97004 * 119.99849 * 359.97438 * 6 5 4 37 37 H 1.08996 * 109.47653 * 300.00295 * 9 7 6 38 38 H 1.09006 * 109.46907 * 59.99928 * 9 7 6 39 39 H 1.09002 * 109.60759 * 259.57766 * 16 13 12 40 40 H 1.09000 * 109.60819 * 139.08638 * 16 13 12 41 41 H 1.09001 * 109.49650 * 188.25142 * 17 16 13 42 42 H 1.09004 * 109.49099 * 68.18290 * 17 16 13 43 43 H 1.09001 * 109.54242 * 310.86211 * 18 17 16 44 44 H 1.09007 * 109.61912 * 190.63035 * 18 17 16 45 45 H 1.09004 * 109.74782 * 317.32919 * 19 12 11 46 46 H 1.08995 * 109.75419 * 78.00636 * 19 12 11 47 47 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 48 48 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5095 7 6 5.3742 -1.3406 2.7746 8 8 6.1586 -0.8015 2.0231 9 6 5.8766 -2.0511 4.0051 10 7 7.3367 -1.9488 4.0661 11 7 8.2570 -2.8495 3.5089 12 6 9.4444 -2.4282 3.7801 13 7 9.3468 -1.2673 4.5199 14 6 8.0457 -0.9667 4.6642 15 8 7.5892 0.0101 5.2313 16 6 10.4982 -0.5301 5.0523 17 6 11.7513 -0.9502 4.2759 18 6 11.8586 -2.4788 4.2731 19 6 10.7576 -3.0557 3.3731 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 2.3867 1.6851 -4.9180 27 1 4.2219 0.2312 -5.5507 28 1 1.9472 -0.3544 -6.1537 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3573 36 1 3.4259 -1.7359 3.1105 37 1 5.4424 -1.5915 4.8929 38 1 5.5878 -3.1013 3.9615 39 1 10.6265 -0.7656 6.1089 40 1 10.3348 0.5407 4.9312 41 1 12.6344 -0.5245 4.7525 42 1 11.6816 -0.5887 3.2499 43 1 11.7340 -2.8549 5.2886 44 1 12.8352 -2.7765 3.8911 45 1 10.7049 -4.1367 3.5023 46 1 10.9713 -2.8194 2.3308 47 1 2.2490 -1.6318 -1.1526 48 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266182759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:37 Heat of formation + Delta-G solvation = 10.948078 kcal Electronic energy + Delta-G solvation = -29023.971914 eV Core-core repulsion = 24922.974197 eV Total energy + Delta-G solvation = -4100.997717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.72431 -39.52505 -37.86996 -37.00388 -36.52456 -34.35006 -33.74774 -32.77009 -32.20909 -29.78922 -29.06852 -28.39391 -27.48940 -24.82120 -23.79022 -22.99136 -22.67637 -21.75411 -20.60736 -20.08769 -19.66202 -17.64439 -17.54320 -17.14018 -16.58459 -16.34383 -16.01956 -15.42508 -15.25789 -14.90079 -14.71839 -14.68713 -14.60225 -14.04451 -13.72873 -13.68106 -13.44469 -13.18143 -13.15495 -12.47072 -12.41974 -12.16449 -12.10665 -12.01268 -11.62695 -11.51881 -11.49574 -11.45402 -11.04147 -10.90055 -10.72807 -10.61209 -10.50096 -10.31992 -10.23742 -9.94560 -9.63519 -9.59013 -8.90384 -8.79738 -8.61299 -6.91668 -5.71910 -3.00343 1.50814 1.78946 2.56245 2.70024 2.77656 3.36858 3.47194 3.52834 3.54916 3.89869 4.10568 4.19063 4.28599 4.56732 4.63852 4.74971 4.79043 4.88040 4.93000 4.99475 5.16887 5.21405 5.26552 5.32620 5.34652 5.43002 5.46079 5.59580 5.63514 5.69828 5.72632 5.90872 5.94306 6.10216 6.20796 6.34750 6.37833 6.42545 6.49839 6.69351 6.73725 6.89483 7.09038 7.49736 7.60422 7.75766 7.93419 8.33937 8.46481 9.57933 10.14687 10.49337 11.50858 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002314 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.016087 B =12097.038735 C =13361.568978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.725 5.725 7 C 0.491 3.509 8 O -0.522 6.522 9 C 0.144 3.856 10 N -0.438 5.438 11 N -0.266 5.266 12 C 0.276 3.724 13 N -0.556 5.556 14 C 0.658 3.342 15 O -0.555 6.555 16 C 0.131 3.869 17 C -0.138 4.138 18 C -0.123 4.123 19 C -0.040 4.040 20 N -0.723 5.723 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.979 -4.245 22.599 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C 0.001 3.999 6 N -0.377 5.377 7 C 0.274 3.726 8 O -0.397 6.397 9 C 0.018 3.982 10 N -0.257 5.257 11 N -0.087 5.087 12 C -0.003 4.003 13 N -0.286 5.286 14 C 0.357 3.643 15 O -0.429 6.429 16 C 0.010 3.990 17 C -0.176 4.176 18 C -0.162 4.162 19 C -0.080 4.080 20 N -0.365 5.365 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.594 -3.699 21.871 27.114 hybrid contribution 0.006 0.550 -0.437 0.703 sum 15.600 -3.150 21.433 26.696 Atomic orbital electron populations 1.22417 0.99089 1.00824 0.99965 1.20160 0.91904 0.95593 0.86031 0.93318 1.22058 0.93774 1.01830 0.99372 1.21464 0.94435 0.97128 0.86900 1.46015 1.06670 1.57236 1.27821 1.20826 0.83025 0.81297 0.87435 1.90764 1.55238 1.44742 1.48934 1.21227 0.74618 1.03803 0.98531 1.48252 1.05089 1.21372 1.50996 1.76777 0.95955 1.16052 1.19901 1.24272 0.96203 0.86523 0.93265 1.46022 1.07459 1.25058 1.50027 1.16437 0.81385 0.83981 0.82474 1.91073 1.73759 1.28130 1.49922 1.21780 0.82283 0.96960 0.97990 1.21997 0.96907 0.96668 1.02048 1.21716 0.98879 0.94981 1.00581 1.20509 0.85218 1.00906 1.01368 1.42458 1.78087 1.10651 1.05352 1.19269 1.36206 0.93890 0.87382 0.91177 1.24728 1.02182 0.95991 0.98080 1.69666 1.50949 1.08690 1.28782 0.86148 0.77312 0.78820 0.84119 1.20596 1.21906 1.21966 0.94566 0.92729 0.93511 0.91861 0.91521 0.89702 0.91874 0.76931 0.85936 0.85729 0.90060 0.89018 0.88877 0.90241 0.90755 0.89369 0.87597 0.87768 0.78295 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.40 2.89 -67.93 -0.20 3.20 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C -0.13 -2.05 4.87 -26.73 -0.13 -2.18 16 5 C 0.12 2.14 5.56 -4.04 -0.02 2.12 16 6 N -0.73 -10.07 5.56 -60.30 -0.33 -10.41 16 7 C 0.49 7.91 7.90 -10.98 -0.09 7.83 16 8 O -0.52 -11.31 16.43 5.56 0.09 -11.22 16 9 C 0.14 1.74 6.87 -5.19 -0.04 1.70 16 10 N -0.44 -6.46 3.12 -66.40 -0.21 -6.66 16 11 N -0.27 -3.66 12.51 33.13 0.41 -3.24 16 12 C 0.28 2.99 7.73 -153.76 -1.19 1.81 16 13 N -0.56 -6.55 3.13 -117.55 -0.37 -6.92 16 14 C 0.66 10.31 8.64 -87.04 -0.75 9.55 16 15 O -0.56 -10.22 17.83 5.08 0.09 -10.13 16 16 C 0.13 0.99 6.88 -3.78 -0.03 0.96 16 17 C -0.14 -0.60 5.94 -26.46 -0.16 -0.76 16 18 C -0.12 -0.42 5.96 -26.37 -0.16 -0.58 16 19 C -0.04 -0.23 6.32 -27.44 -0.17 -0.40 16 20 N -0.72 -18.04 4.57 -53.42 -0.24 -18.28 16 21 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 25 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.84 7.75 -51.93 -0.40 1.43 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 3.84 8.47 -40.82 -0.35 3.49 16 37 H 0.12 1.18 8.12 -51.93 -0.42 0.76 16 38 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 43 H 0.07 0.24 8.11 -51.93 -0.42 -0.18 16 44 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -40.35 399.97 -9.44 -49.79 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.79 Total: 7.59 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: -2.82 Total: 13.42 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -0.02 Total: -73.47 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.18 Total: -21.35 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -40.35 -9.44 -49.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266182759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.736 kcal (2) G-P(sol) polarization free energy of solvation -40.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds