Wall clock time and date at job start Tue Mar 31 2020 19:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 N 1.46498 * 109.47272 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00043 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00359 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99941 * 179.97438 * 7 6 5 10 10 N 1.46498 * 109.46996 * 179.97438 * 9 7 6 11 11 N 1.40309 * 126.32569 * 270.02442 * 10 9 7 12 12 C 1.28871 * 108.11652 * 180.51633 * 11 10 9 13 13 N 1.38011 * 108.82388 * 0.54282 * 12 11 10 14 14 C 1.34319 * 108.31836 * 358.31765 * 13 12 11 15 15 O 1.21819 * 126.33011 * 182.03844 * 14 13 12 16 16 C 1.46714 * 124.17568 * 177.61030 * 13 12 11 17 17 C 1.53284 * 108.66558 * 19.33217 * 16 13 12 18 18 C 1.53240 * 109.36037 * 308.22062 * 17 16 13 19 19 C 1.51122 * 127.46279 * 180.94376 * 12 11 10 20 20 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 33 33 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 34 34 H 1.09000 * 109.46766 * 299.99484 * 5 4 2 35 35 H 1.08992 * 109.47398 * 59.99391 * 5 4 2 36 36 H 0.97004 * 119.99849 * 359.97438 * 6 5 4 37 37 H 1.08996 * 109.47653 * 300.00295 * 9 7 6 38 38 H 1.09006 * 109.46907 * 59.99928 * 9 7 6 39 39 H 1.09002 * 109.60759 * 259.57766 * 16 13 12 40 40 H 1.09000 * 109.60819 * 139.08638 * 16 13 12 41 41 H 1.09001 * 109.49650 * 188.25142 * 17 16 13 42 42 H 1.09004 * 109.49099 * 68.18290 * 17 16 13 43 43 H 1.09001 * 109.54242 * 310.86211 * 18 17 16 44 44 H 1.09007 * 109.61912 * 190.63035 * 18 17 16 45 45 H 1.09004 * 109.74782 * 317.32919 * 19 12 11 46 46 H 1.08995 * 109.75419 * 78.00636 * 19 12 11 47 47 H 0.97000 * 119.99792 * 264.99726 * 20 2 1 48 48 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5095 7 6 5.3742 -1.3406 2.7746 8 8 6.1586 -0.8015 2.0231 9 6 5.8766 -2.0511 4.0051 10 7 7.3367 -1.9488 4.0661 11 7 8.2570 -2.8495 3.5089 12 6 9.4444 -2.4282 3.7801 13 7 9.3468 -1.2673 4.5199 14 6 8.0457 -0.9667 4.6642 15 8 7.5892 0.0101 5.2313 16 6 10.4982 -0.5301 5.0523 17 6 11.7513 -0.9502 4.2759 18 6 11.8586 -2.4788 4.2731 19 6 10.7576 -3.0557 3.3731 20 7 2.0183 -0.6907 -1.1962 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0405 -2.4242 23 6 2.6172 -0.6605 -3.5077 24 7 2.9303 -1.9375 -3.4485 25 14 2.8029 0.2732 -5.1149 26 1 2.3867 1.6851 -4.9180 27 1 4.2219 0.2312 -5.5507 28 1 1.9472 -0.3544 -6.1537 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3573 36 1 3.4259 -1.7359 3.1105 37 1 5.4424 -1.5915 4.8929 38 1 5.5878 -3.1013 3.9615 39 1 10.6265 -0.7656 6.1089 40 1 10.3348 0.5407 4.9312 41 1 12.6344 -0.5245 4.7525 42 1 11.6816 -0.5887 3.2499 43 1 11.7340 -2.8549 5.2886 44 1 12.8352 -2.7765 3.8911 45 1 10.7049 -4.1367 3.5023 46 1 10.9713 -2.8194 2.3308 47 1 2.2490 -1.6318 -1.1526 48 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266182759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:36 Heat of formation + Delta-G solvation = -19.079630 kcal Electronic energy + Delta-G solvation = -29025.274013 eV Core-core repulsion = 24922.974197 eV Total energy + Delta-G solvation = -4102.299816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.67433 -40.83248 -38.84431 -38.22413 -37.77532 -35.91523 -34.54514 -34.16396 -33.58792 -31.27946 -30.21296 -29.66230 -28.57973 -25.94050 -25.41044 -24.02397 -23.66760 -22.85420 -21.94663 -21.17555 -20.70212 -19.33491 -18.68194 -18.50676 -17.60834 -17.35071 -17.10280 -16.89309 -16.45857 -16.36120 -15.74141 -15.60597 -15.36058 -15.25048 -15.19651 -14.86905 -14.72547 -14.28101 -14.16563 -13.99709 -13.59168 -13.41199 -13.25628 -13.13608 -12.93969 -12.87417 -12.65367 -12.30131 -12.25313 -12.12406 -12.09667 -11.90159 -11.86855 -11.71033 -11.62568 -11.45623 -11.36378 -10.98482 -10.78849 -10.19890 -9.68180 -8.99474 -7.94655 -5.21280 0.57805 0.91509 1.43358 1.44904 1.45153 1.45439 1.54035 1.92101 2.20203 2.55034 3.19159 3.39504 3.54387 3.64159 3.73888 3.83238 3.89353 3.92135 3.97942 4.07592 4.19600 4.31991 4.33644 4.37006 4.43719 4.53089 4.64222 4.74243 4.77059 4.85155 4.87365 4.88030 4.98857 5.00732 5.04917 5.08807 5.16452 5.18533 5.33617 5.36988 5.38354 5.52279 5.57801 5.60510 6.28717 6.44608 6.52331 6.84394 7.15293 7.34474 8.12342 8.33840 9.29136 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.002314 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.016087 B =12097.038735 C =13361.568978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.039 0.961 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.704 5.704 7 C 0.486 3.514 8 O -0.587 6.587 9 C 0.145 3.855 10 N -0.447 5.447 11 N -0.303 5.303 12 C 0.285 3.715 13 N -0.554 5.554 14 C 0.638 3.362 15 O -0.596 6.596 16 C 0.118 3.882 17 C -0.132 4.132 18 C -0.115 4.115 19 C -0.042 4.042 20 N -0.735 5.735 21 C -0.232 4.232 22 H 0.073 0.927 23 C -0.079 4.079 24 N -0.969 5.969 25 Si 0.966 3.034 26 H -0.267 1.267 27 H -0.298 1.298 28 H -0.291 1.291 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.422 0.578 37 H 0.149 0.851 38 H 0.162 0.838 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.110 0.890 47 H 0.372 0.628 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.577 -4.807 24.523 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.057 0.943 4 C -0.152 4.152 5 C 0.010 3.990 6 N -0.358 5.358 7 C 0.271 3.729 8 O -0.466 6.466 9 C 0.020 3.980 10 N -0.265 5.265 11 N -0.125 5.125 12 C 0.007 3.993 13 N -0.282 5.282 14 C 0.337 3.663 15 O -0.474 6.474 16 C -0.002 4.002 17 C -0.170 4.170 18 C -0.153 4.153 19 C -0.082 4.082 20 N -0.376 5.376 21 C -0.365 4.365 22 H 0.090 0.910 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.796 3.204 26 H -0.192 1.192 27 H -0.226 1.226 28 H -0.218 1.218 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.260 0.740 37 H 0.167 0.833 38 H 0.179 0.821 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.141 0.859 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.136 0.864 45 H 0.144 0.856 46 H 0.128 0.872 47 H 0.204 0.796 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 16.158 -4.265 23.857 29.128 hybrid contribution -0.151 0.770 -0.956 1.236 sum 16.007 -3.496 22.902 28.159 Atomic orbital electron populations 1.22244 0.96859 1.01186 1.00871 1.20474 0.93348 0.95061 0.85746 0.94331 1.21916 0.91936 1.02409 0.98971 1.21090 0.95692 0.95734 0.86438 1.45756 1.06755 1.56352 1.26920 1.21660 0.82937 0.80348 0.87941 1.90732 1.56915 1.47617 1.51378 1.21506 0.73935 1.05511 0.97031 1.48520 1.06033 1.21303 1.50641 1.76774 0.96988 1.16939 1.21789 1.25338 0.97220 0.85592 0.91180 1.46331 1.07117 1.25375 1.49424 1.16829 0.82808 0.83919 0.82765 1.91011 1.74847 1.29659 1.51860 1.22203 0.82297 0.96037 0.99645 1.22040 0.96042 0.97750 1.01120 1.21752 0.99171 0.93752 1.00648 1.20894 0.83215 1.01912 1.02150 1.42650 1.78399 1.10247 1.06278 1.19628 1.34220 0.94067 0.88543 0.90952 1.25500 1.03285 0.96941 1.01392 1.69813 1.52857 1.10164 1.29230 0.85165 0.76622 0.78285 0.80313 1.19155 1.22583 1.21825 0.90571 0.94892 0.93390 0.87487 0.90437 0.94680 0.93788 0.73954 0.83304 0.82078 0.88204 0.90441 0.85860 0.91364 0.89932 0.86411 0.85590 0.87162 0.79601 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.49 71.98 0.68 -4.38 16 2 C 0.16 6.22 2.89 44.99 0.13 6.35 16 3 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 4 C -0.11 -3.34 4.87 30.60 0.15 -3.19 16 5 C 0.13 4.75 5.56 86.38 0.48 5.23 16 6 N -0.70 -19.12 5.56 -463.08 -2.57 -21.69 16 7 C 0.49 15.90 7.90 87.66 0.69 16.59 16 8 O -0.59 -26.81 16.43 -3.01 -0.05 -26.86 16 9 C 0.14 3.40 6.87 85.64 0.59 3.99 16 10 N -0.45 -13.33 3.12 -481.97 -1.50 -14.83 16 11 N -0.30 -8.36 12.51 -49.11 -0.61 -8.97 16 12 C 0.28 6.02 7.73 137.75 1.06 7.09 16 13 N -0.55 -13.10 3.13 -644.25 -2.02 -15.12 16 14 C 0.64 20.58 8.64 179.10 1.55 22.13 16 15 O -0.60 -22.84 17.83 -4.73 -0.08 -22.93 16 16 C 0.12 1.70 6.88 86.43 0.59 2.30 16 17 C -0.13 -0.86 5.94 30.77 0.18 -0.67 16 18 C -0.12 -0.41 5.96 30.83 0.18 -0.23 16 19 C -0.04 -0.40 6.32 30.14 0.19 -0.21 16 20 N -0.73 -37.28 4.57 -322.93 -1.48 -38.76 16 21 C -0.23 -13.27 9.93 84.04 0.83 -12.44 16 22 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 24 N -0.97 -61.37 13.06 21.65 0.28 -61.08 16 25 Si 0.97 48.25 29.55 68.60 2.03 50.27 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 28 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.03 1.60 7.75 -2.39 -0.02 1.58 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.42 7.12 8.47 -92.71 -0.79 6.33 16 37 H 0.15 2.66 8.12 -2.39 -0.02 2.64 16 38 H 0.16 2.52 8.14 -2.38 -0.02 2.50 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 41 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.07 0.63 8.10 -2.39 -0.02 0.61 16 43 H 0.08 0.23 8.11 -2.39 -0.02 0.21 16 44 H 0.12 -0.16 8.14 -2.38 -0.02 -0.18 16 45 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.37 20.32 7.80 -92.71 -0.72 19.60 16 48 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -94.58 399.97 1.25 -93.34 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.53 Total: 28.34 kcal Atomic # 6 Polarization: 30.52 SS G_CDS: 7.79 Total: 38.31 kcal Atomic # 7 Polarization: -152.56 SS G_CDS: -7.90 Total: -160.46 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.13 Total: -49.79 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.27 kcal Total: -94.58 1.25 -93.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266182759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.256 kcal (2) G-P(sol) polarization free energy of solvation -94.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds