Wall clock time and date at job start Tue Mar 31 2020 20:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46851 * 2 1 4 4 N 1.28444 * 125.19326 * 85.73619 * 3 2 1 5 5 C 1.30866 * 110.92516 * 179.97438 * 4 3 2 6 6 C 1.50708 * 126.06492 * 179.97438 * 5 4 3 7 7 C 1.39672 * 107.86606 * 359.97438 * 5 4 3 8 8 C 1.36608 * 125.18815 * 265.70504 * 3 2 1 9 9 C 1.47164 * 126.88483 * 0.04711 * 8 3 2 10 10 O 1.21629 * 119.99879 * 5.54074 * 9 8 3 11 11 N 1.34767 * 119.99843 * 185.54546 * 9 8 3 12 12 C 1.46502 * 120.00030 * 185.12340 * 11 9 8 13 13 C 1.53000 * 109.47388 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47251 * 180.02562 * 13 12 11 15 15 C 1.46901 * 111.00330 * 66.04530 * 14 13 12 16 16 C 1.46898 * 110.99947 * 190.00481 * 14 13 12 17 17 C 1.50703 * 109.46895 * 169.99920 * 16 14 13 18 18 O 1.21292 * 120.00426 * 359.97438 * 17 16 14 19 19 N 1.34781 * 119.99675 * 179.97438 * 17 16 14 20 20 C 1.37093 * 119.99885 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99999 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00310 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99606 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00512 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47212 * 89.99824 * 24 22 20 26 26 H 1.48497 * 109.47385 * 210.00210 * 24 22 20 27 27 H 1.48509 * 109.46841 * 330.00007 * 24 22 20 28 28 H 1.08998 * 109.46911 * 300.00167 * 1 2 3 29 29 H 1.09003 * 109.46584 * 59.99998 * 1 2 3 30 30 H 1.08995 * 109.46679 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46911 * 239.99833 * 2 1 3 32 32 H 1.08998 * 109.46874 * 119.99604 * 2 1 3 33 33 H 1.09003 * 109.47011 * 90.02298 * 6 5 4 34 34 H 1.08999 * 109.46682 * 210.01799 * 6 5 4 35 35 H 1.09005 * 109.46886 * 330.01979 * 6 5 4 36 36 H 1.08000 * 127.31721 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00536 * 5.12944 * 11 9 8 38 38 H 1.08993 * 109.47412 * 300.00342 * 12 11 9 39 39 H 1.09005 * 109.46605 * 59.99773 * 12 11 9 40 40 H 1.09001 * 109.47075 * 300.00273 * 13 12 11 41 41 H 1.08992 * 109.47014 * 60.00389 * 13 12 11 42 42 H 1.08996 * 109.46783 * 60.00310 * 15 14 13 43 43 H 1.08993 * 109.47351 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.46832 * 299.99838 * 15 14 13 45 45 H 1.08996 * 109.46830 * 289.99102 * 16 14 13 46 46 H 1.08992 * 109.47654 * 49.99243 * 16 14 13 47 47 H 0.96997 * 120.00344 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99745 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1915 2.1052 1.0468 5 6 2.6373 3.2928 0.7252 6 6 2.9562 4.4105 1.6845 7 6 2.7652 3.3406 -0.6649 8 6 2.3595 2.0956 -1.1133 9 6 2.3065 1.6339 -2.5096 10 8 1.8333 0.5447 -2.7725 11 7 2.7824 2.4179 -3.4971 12 6 2.6286 2.0091 -4.8955 13 6 3.2501 3.0685 -5.8079 14 7 3.0954 2.6588 -7.2101 15 6 1.6796 2.6472 -7.6020 16 6 3.8811 3.5232 -8.1008 17 6 3.8977 2.9329 -9.4873 18 8 3.3129 1.8942 -9.7114 19 7 4.5624 3.5594 -10.4785 20 6 4.5780 3.0222 -11.7397 21 1 4.0579 2.0968 -11.9389 22 6 5.2637 3.6676 -12.7614 23 7 5.8977 4.7928 -12.5186 24 14 5.2843 2.9361 -14.4801 25 1 4.1333 3.4631 -15.2562 26 1 6.5512 3.3063 -15.1605 27 1 5.1848 1.4571 -14.3897 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9993 4.3384 1.9925 34 1 2.7876 5.3693 1.1941 35 1 2.3123 4.3322 2.5605 36 1 3.1076 4.1723 -1.2627 37 1 3.2269 3.2528 -3.2820 38 1 3.1305 1.0544 -5.0523 39 1 1.5690 1.9052 -5.1292 40 1 2.7478 4.0230 -5.6510 41 1 4.3096 3.1727 -5.5743 42 1 1.2611 3.6464 -7.4816 43 1 1.5937 2.3401 -8.6442 44 1 1.1337 1.9460 -6.9708 45 1 3.4314 4.5155 -8.1338 46 1 4.9018 3.5992 -7.7260 47 1 5.0304 4.3899 -10.2993 48 1 6.3761 5.2436 -13.2319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266329066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:54 Heat of formation + Delta-G solvation = 10.977551 kcal Electronic energy + Delta-G solvation = -28196.679005 eV Core-core repulsion = 24095.682566 eV Total energy + Delta-G solvation = -4100.996439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.89978 -39.72405 -38.65802 -36.86328 -35.42642 -34.60559 -33.83186 -31.79576 -31.47427 -31.25426 -29.32770 -27.80860 -27.72242 -25.52301 -24.41695 -23.69621 -22.77505 -21.40188 -21.24195 -19.71243 -19.19085 -18.03131 -17.86368 -16.76122 -16.47342 -16.05778 -15.95757 -15.75326 -15.04431 -14.96566 -14.78987 -14.61352 -14.11633 -14.06809 -13.99938 -13.57826 -13.52645 -13.39400 -13.22990 -13.04999 -12.76256 -12.61134 -12.35698 -12.16193 -11.93104 -11.66628 -11.54605 -11.44061 -11.30610 -11.10539 -11.00325 -10.96229 -10.39847 -10.36233 -10.22966 -9.56310 -9.49231 -9.26562 -9.19186 -8.50965 -8.01135 -7.91833 -6.43184 -3.83901 0.93143 2.00351 2.20719 2.81533 2.89618 3.16957 3.25925 3.31929 3.88081 3.97559 4.08416 4.19731 4.29721 4.56443 4.60761 4.69523 4.78753 4.90616 4.92861 5.00793 5.08407 5.20302 5.22968 5.26402 5.29113 5.33769 5.34003 5.49633 5.59525 5.64299 5.66067 5.69899 5.76897 5.82640 5.89178 5.96193 6.07168 6.17487 6.25198 6.42857 6.52226 7.06100 7.17486 7.28010 7.54132 7.72163 7.82724 8.04836 8.60174 9.16837 9.52672 10.04432 10.74514 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.001670 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.375151 B =16762.465659 C =17550.897205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.252 5.252 4 N -0.276 5.276 5 C 0.021 3.979 6 C -0.067 4.067 7 C -0.188 4.188 8 C -0.034 4.034 9 C 0.591 3.409 10 O -0.536 6.536 11 N -0.712 5.712 12 C 0.123 3.877 13 C 0.044 3.956 14 N -0.515 5.515 15 C 0.018 3.982 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.160 0.840 37 H 0.403 0.597 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.016 0.984 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 0.857 27.144 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.040 5.040 4 N -0.110 5.110 5 C -0.135 4.135 6 C -0.125 4.125 7 C -0.217 4.217 8 C -0.163 4.163 9 C 0.376 3.624 10 O -0.413 6.413 11 N -0.363 5.363 12 C 0.000 4.000 13 C -0.085 4.085 14 N -0.239 5.239 15 C -0.130 4.130 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.178 0.822 37 H 0.238 0.762 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.034 0.966 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.802 -1.821 27.485 28.372 hybrid contribution 0.532 2.013 -1.285 2.447 sum -6.270 0.192 26.200 26.940 Atomic orbital electron populations 1.22073 0.93319 1.03611 1.03063 1.22235 0.96389 0.76335 1.05896 1.45802 1.44136 1.12335 1.01734 1.73129 1.19369 1.04772 1.13750 1.22019 1.03780 0.93860 0.93850 1.20093 1.02106 0.93427 0.96889 1.22113 1.07623 0.96907 0.95066 1.21393 1.10834 0.94185 0.89891 1.16855 0.78335 0.84253 0.82977 1.90807 1.46077 1.20562 1.83835 1.45588 1.59573 1.24806 1.06382 1.21418 1.01929 0.99113 0.77524 1.22250 1.01279 0.95655 0.89341 1.61433 1.10544 1.52098 0.99812 1.22634 0.86805 0.98822 1.04752 1.21869 0.98774 0.94189 0.93585 1.19699 0.84764 0.87096 0.85589 1.90494 1.47897 1.24613 1.83038 1.41860 1.46113 1.23644 1.08441 1.19700 1.30688 1.08011 0.84418 0.87882 1.25261 0.96465 0.95954 1.00276 1.69613 1.33813 1.16685 1.34227 0.85855 0.77514 0.79421 0.81490 1.20441 1.20935 1.19398 0.91881 0.91583 0.89978 0.86351 0.88489 0.90780 0.90487 0.91036 0.82227 0.76237 0.89766 0.90835 0.94391 0.90104 0.96560 0.88323 0.91874 0.93293 0.89268 0.77499 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.11 0.96 6.58 -4.04 -0.03 0.93 16 3 N -0.25 -2.68 3.35 -57.13 -0.19 -2.88 16 4 N -0.28 -3.01 11.90 33.64 0.40 -2.61 16 5 C 0.02 0.19 7.22 -82.46 -0.60 -0.40 16 6 C -0.07 -0.38 10.45 36.01 0.38 0.00 16 7 C -0.19 -1.60 10.43 -38.98 -0.41 -2.00 16 8 C -0.03 -0.36 6.96 -82.05 -0.57 -0.93 16 9 C 0.59 6.69 7.78 -12.64 -0.10 6.59 16 10 O -0.54 -7.52 14.68 5.25 0.08 -7.44 16 11 N -0.71 -6.58 5.53 -61.47 -0.34 -6.92 16 12 C 0.12 1.37 5.60 -4.04 -0.02 1.35 16 13 C 0.04 0.49 5.07 -3.82 -0.02 0.47 16 14 N -0.51 -8.07 4.50 -244.38 -1.10 -9.17 16 15 C 0.02 0.27 8.96 60.07 0.54 0.81 16 16 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 17 C 0.44 10.19 7.47 -10.98 -0.08 10.11 16 18 O -0.58 -15.22 13.91 5.55 0.08 -15.15 16 19 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 20 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.12 1.12 6.20 -51.93 -0.32 0.80 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.16 0.85 7.62 -52.49 -0.40 0.45 16 37 H 0.40 2.59 7.55 -40.82 -0.31 2.28 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 40 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 41 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 42 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.10 1.90 5.82 -51.93 -0.30 1.60 16 44 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 47 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 399.46 15.07 6.02 6.02 Total: -1.00 -33.92 399.46 -7.52 -41.44 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.31 Total: 9.45 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -0.79 Total: 8.94 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.56 Total: -59.12 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.15 Total: -22.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.92 -7.52 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266329066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.420 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds