Wall clock time and date at job start Tue Mar 31 2020 20:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46851 * 2 1 4 4 N 1.28444 * 125.19326 * 85.73619 * 3 2 1 5 5 C 1.30866 * 110.92516 * 179.97438 * 4 3 2 6 6 C 1.50708 * 126.06492 * 179.97438 * 5 4 3 7 7 C 1.39672 * 107.86606 * 359.97438 * 5 4 3 8 8 C 1.36608 * 125.18815 * 265.70504 * 3 2 1 9 9 C 1.47164 * 126.88483 * 0.04711 * 8 3 2 10 10 O 1.21629 * 119.99879 * 5.54074 * 9 8 3 11 11 N 1.34767 * 119.99843 * 185.54546 * 9 8 3 12 12 C 1.46502 * 120.00030 * 185.12340 * 11 9 8 13 13 C 1.53000 * 109.47388 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47251 * 180.02562 * 13 12 11 15 15 C 1.46901 * 111.00330 * 66.04530 * 14 13 12 16 16 C 1.46898 * 110.99947 * 190.00481 * 14 13 12 17 17 C 1.50703 * 109.46895 * 169.99920 * 16 14 13 18 18 O 1.21292 * 120.00426 * 359.97438 * 17 16 14 19 19 N 1.34781 * 119.99675 * 179.97438 * 17 16 14 20 20 C 1.37093 * 119.99885 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99999 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00310 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99606 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00512 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47212 * 89.99824 * 24 22 20 26 26 H 1.48497 * 109.47385 * 210.00210 * 24 22 20 27 27 H 1.48509 * 109.46841 * 330.00007 * 24 22 20 28 28 H 1.08998 * 109.46911 * 300.00167 * 1 2 3 29 29 H 1.09003 * 109.46584 * 59.99998 * 1 2 3 30 30 H 1.08995 * 109.46679 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46911 * 239.99833 * 2 1 3 32 32 H 1.08998 * 109.46874 * 119.99604 * 2 1 3 33 33 H 1.09003 * 109.47011 * 90.02298 * 6 5 4 34 34 H 1.08999 * 109.46682 * 210.01799 * 6 5 4 35 35 H 1.09005 * 109.46886 * 330.01979 * 6 5 4 36 36 H 1.08000 * 127.31721 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00536 * 5.12944 * 11 9 8 38 38 H 1.08993 * 109.47412 * 300.00342 * 12 11 9 39 39 H 1.09005 * 109.46605 * 59.99773 * 12 11 9 40 40 H 1.09001 * 109.47075 * 300.00273 * 13 12 11 41 41 H 1.08992 * 109.47014 * 60.00389 * 13 12 11 42 42 H 1.08996 * 109.46783 * 60.00310 * 15 14 13 43 43 H 1.08993 * 109.47351 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.46832 * 299.99838 * 15 14 13 45 45 H 1.08996 * 109.46830 * 289.99102 * 16 14 13 46 46 H 1.08992 * 109.47654 * 49.99243 * 16 14 13 47 47 H 0.96997 * 120.00344 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99745 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1915 2.1052 1.0468 5 6 2.6373 3.2928 0.7252 6 6 2.9562 4.4105 1.6845 7 6 2.7652 3.3406 -0.6649 8 6 2.3595 2.0956 -1.1133 9 6 2.3065 1.6339 -2.5096 10 8 1.8333 0.5447 -2.7725 11 7 2.7824 2.4179 -3.4971 12 6 2.6286 2.0091 -4.8955 13 6 3.2501 3.0685 -5.8079 14 7 3.0954 2.6588 -7.2101 15 6 1.6796 2.6472 -7.6020 16 6 3.8811 3.5232 -8.1008 17 6 3.8977 2.9329 -9.4873 18 8 3.3129 1.8942 -9.7114 19 7 4.5624 3.5594 -10.4785 20 6 4.5780 3.0222 -11.7397 21 1 4.0579 2.0968 -11.9389 22 6 5.2637 3.6676 -12.7614 23 7 5.8977 4.7928 -12.5186 24 14 5.2843 2.9361 -14.4801 25 1 4.1333 3.4631 -15.2562 26 1 6.5512 3.3063 -15.1605 27 1 5.1848 1.4571 -14.3897 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9993 4.3384 1.9925 34 1 2.7876 5.3693 1.1941 35 1 2.3123 4.3322 2.5605 36 1 3.1076 4.1723 -1.2627 37 1 3.2269 3.2528 -3.2820 38 1 3.1305 1.0544 -5.0523 39 1 1.5690 1.9052 -5.1292 40 1 2.7478 4.0230 -5.6510 41 1 4.3096 3.1727 -5.5743 42 1 1.2611 3.6464 -7.4816 43 1 1.5937 2.3401 -8.6442 44 1 1.1337 1.9460 -6.9708 45 1 3.4314 4.5155 -8.1338 46 1 4.9018 3.5992 -7.7260 47 1 5.0304 4.3899 -10.2993 48 1 6.3761 5.2436 -13.2319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266329066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:54 Heat of formation + Delta-G solvation = -15.275837 kcal Electronic energy + Delta-G solvation = -28197.817437 eV Core-core repulsion = 24095.682566 eV Total energy + Delta-G solvation = -4102.134871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.59971 -40.66608 -40.25856 -38.17625 -36.26178 -35.85300 -35.36733 -33.25838 -32.49673 -32.13811 -30.39055 -29.03795 -28.36867 -27.04515 -25.73740 -24.55091 -23.59781 -22.41673 -22.01908 -20.95852 -20.49980 -19.83553 -18.77227 -17.80266 -17.46903 -17.30436 -16.87683 -16.72911 -16.53546 -16.13377 -15.99495 -15.63905 -15.47338 -15.28361 -15.01987 -14.68343 -14.59782 -14.34717 -14.07890 -13.84252 -13.75472 -13.44016 -13.25551 -13.16081 -13.02834 -12.97770 -12.91794 -12.57094 -12.53953 -12.38620 -12.32457 -12.15161 -12.08439 -11.68109 -11.44128 -11.25503 -10.39975 -10.26704 -10.03617 -9.97251 -9.85316 -9.21976 -8.44655 -5.92605 0.17376 1.30029 1.38869 1.42844 1.54114 1.55101 1.99896 2.08972 2.09079 2.31260 2.88581 3.22673 3.42721 3.46942 3.52521 3.83962 3.95913 3.97735 4.07022 4.12174 4.26550 4.27826 4.38625 4.40228 4.48756 4.55630 4.62571 4.65658 4.66469 4.68442 4.74494 4.85401 4.91985 4.95090 5.04576 5.06260 5.16619 5.22713 5.24567 5.43463 5.58248 5.76518 5.86754 6.06550 6.18315 6.34052 6.63860 6.98112 7.08405 7.16123 7.60112 8.16571 8.72634 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.001670 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.375151 B =16762.465659 C =17550.897205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.264 5.264 4 N -0.300 5.300 5 C 0.011 3.989 6 C -0.065 4.065 7 C -0.176 4.176 8 C -0.056 4.056 9 C 0.590 3.410 10 O -0.571 6.571 11 N -0.695 5.695 12 C 0.133 3.867 13 C 0.051 3.949 14 N -0.539 5.539 15 C 0.024 3.976 16 C 0.060 3.940 17 C 0.439 3.561 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.194 0.806 37 H 0.420 0.580 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 2.819 28.425 29.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.052 5.052 4 N -0.134 5.134 5 C -0.145 4.145 6 C -0.123 4.123 7 C -0.205 4.205 8 C -0.184 4.184 9 C 0.376 3.624 10 O -0.450 6.450 11 N -0.347 5.347 12 C 0.009 3.991 13 C -0.076 4.076 14 N -0.264 5.264 15 C -0.124 4.124 16 C -0.070 4.070 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.200 1.200 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.211 0.789 37 H 0.258 0.742 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.134 0.866 47 H 0.231 0.769 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.108 0.192 28.795 29.436 hybrid contribution 0.299 1.393 -1.588 2.133 sum -5.809 1.585 27.207 27.865 Atomic orbital electron populations 1.22007 0.92771 1.04509 1.01906 1.22305 0.96842 0.76087 1.05981 1.45980 1.44611 1.12807 1.01811 1.73116 1.20273 1.05772 1.14223 1.22667 1.02916 0.93974 0.94899 1.20224 1.02644 0.93110 0.96366 1.22556 1.05972 0.96813 0.95120 1.21463 1.12308 0.95241 0.89402 1.17049 0.77844 0.83894 0.83660 1.90791 1.47721 1.22148 1.84385 1.45354 1.59021 1.25122 1.05230 1.21178 1.01069 0.98396 0.78496 1.22252 1.02867 0.96333 0.86192 1.61311 1.10225 1.52945 1.01902 1.22475 0.87498 1.00146 1.02307 1.21736 1.00849 0.94656 0.89805 1.20857 0.82640 0.86276 0.87536 1.90477 1.48991 1.26493 1.84249 1.41923 1.47009 1.24059 1.08251 1.19632 1.32047 1.08008 0.86402 0.90467 1.25987 0.95672 0.96224 1.03360 1.69666 1.33843 1.17182 1.35393 0.84962 0.78082 0.78241 0.77261 1.19703 1.19580 1.19985 0.91908 0.93606 0.88111 0.87582 0.86992 0.89758 0.88379 0.91132 0.78908 0.74238 0.92027 0.91792 0.91724 0.88150 0.94565 0.92622 0.90736 0.90827 0.86650 0.76939 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.24 71.98 0.74 -1.65 16 2 C 0.11 1.88 6.58 86.38 0.57 2.44 16 3 N -0.26 -5.52 3.35 -334.67 -1.12 -6.64 16 4 N -0.30 -6.27 11.90 -47.49 -0.57 -6.83 16 5 C 0.01 0.19 7.22 43.05 0.31 0.50 16 6 C -0.07 -0.57 10.45 71.24 0.74 0.17 16 7 C -0.18 -2.54 10.43 22.66 0.24 -2.31 16 8 C -0.06 -1.11 6.96 40.79 0.28 -0.82 16 9 C 0.59 12.94 7.78 86.59 0.67 13.61 16 10 O -0.57 -16.35 14.68 -4.12 -0.06 -16.41 16 11 N -0.69 -11.42 5.53 -466.64 -2.58 -14.00 16 12 C 0.13 2.74 5.60 86.38 0.48 3.23 16 13 C 0.05 0.98 5.07 86.30 0.44 1.41 16 14 N -0.54 -15.95 4.50 -927.09 -4.17 -20.12 16 15 C 0.02 0.72 8.96 127.69 1.14 1.86 16 16 C 0.06 1.92 5.45 85.56 0.47 2.38 16 17 C 0.44 20.30 7.47 87.66 0.66 20.96 16 18 O -0.62 -33.53 13.91 -3.07 -0.04 -33.57 16 19 N -0.57 -28.82 5.29 -306.98 -1.62 -30.44 16 20 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 23 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 24 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.11 2.11 6.20 -2.39 -0.01 2.10 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 35 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.19 1.25 7.62 -2.91 -0.02 1.23 16 37 H 0.42 3.95 7.55 -92.71 -0.70 3.25 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.46 6.55 -2.38 -0.02 1.45 16 40 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 41 H 0.10 1.56 7.93 -2.39 -0.02 1.55 16 42 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 2.19 5.82 -2.39 -0.01 2.18 16 44 H 0.07 2.04 6.47 -2.39 -0.02 2.03 16 45 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 46 H 0.12 3.09 7.93 -2.39 -0.02 3.07 16 47 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 48 H 0.28 13.81 8.31 -92.70 -0.77 13.04 16 Total: -1.00 -76.25 399.46 -0.27 -76.52 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.44 Total: 31.60 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 8.02 Total: 23.77 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -9.78 Total: -126.68 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -0.10 Total: -49.98 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.25 -0.27 -76.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266329066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.242 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds