Wall clock time and date at job start Tue Mar 31 2020 20:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47366 * 2 1 4 4 N 1.39930 * 125.75865 * 270.00413 * 3 2 1 5 5 C 1.30448 * 108.90321 * 180.02562 * 4 3 2 6 6 C 1.41290 * 108.01917 * 359.97438 * 5 4 3 7 7 C 1.47428 * 126.41564 * 180.02562 * 6 5 4 8 8 O 1.21602 * 120.00252 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99946 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99997 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46997 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46906 * 179.97438 * 11 10 9 13 13 C 1.46905 * 111.00113 * 66.04488 * 12 11 10 14 14 C 1.46902 * 110.99865 * 189.99457 * 12 11 10 15 15 C 1.50700 * 109.47263 * 169.99839 * 14 12 11 16 16 O 1.21299 * 119.99652 * 0.02562 * 15 14 12 17 17 N 1.34777 * 120.00293 * 179.97438 * 15 14 12 18 18 C 1.37097 * 119.99972 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00147 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99717 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99742 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00161 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47009 * 90.00012 * 22 20 18 24 24 H 1.48496 * 109.46982 * 209.99812 * 22 20 18 25 25 H 1.48496 * 109.46850 * 329.99883 * 22 20 18 26 26 C 1.34259 * 125.75316 * 90.00408 * 3 2 1 27 27 C 1.50706 * 126.29028 * 0.25935 * 26 3 2 28 28 H 1.08997 * 109.47594 * 59.99319 * 1 2 3 29 29 H 1.08998 * 109.47601 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46665 * 299.99608 * 1 2 3 31 31 H 1.09005 * 109.47102 * 240.00235 * 2 1 3 32 32 H 1.08997 * 109.47594 * 120.00681 * 2 1 3 33 33 H 1.07998 * 125.99088 * 180.02562 * 5 4 3 34 34 H 0.97000 * 120.00137 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47084 * 299.98834 * 10 9 7 36 36 H 1.08992 * 109.47698 * 59.99282 * 10 9 7 37 37 H 1.09001 * 109.46942 * 299.99315 * 11 10 9 38 38 H 1.08992 * 109.47292 * 59.99267 * 11 10 9 39 39 H 1.09002 * 109.47002 * 60.00064 * 13 12 11 40 40 H 1.09000 * 109.47277 * 180.02562 * 13 12 11 41 41 H 1.08997 * 109.46932 * 299.99501 * 13 12 11 42 42 H 1.08997 * 109.47603 * 290.00071 * 14 12 11 43 43 H 1.09002 * 109.46837 * 50.00123 * 14 12 11 44 44 H 0.96992 * 119.99654 * 0.02562 * 17 15 14 45 45 H 0.97004 * 120.00036 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.47410 * 269.71497 * 27 26 3 47 47 H 1.09006 * 109.46750 * 29.72038 * 27 26 3 48 48 H 1.09002 * 109.46893 * 149.71614 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.2909 2.1521 -1.1355 5 6 2.7076 3.3289 -0.7573 6 6 2.7171 3.3560 0.6553 7 6 3.1184 4.4911 1.5063 8 8 3.0808 4.3864 2.7172 9 7 3.5260 5.6452 0.9420 10 6 3.9254 6.7729 1.7876 11 6 4.3418 7.9505 0.9039 12 7 4.7416 9.0815 1.7518 13 6 5.9594 8.7660 2.5104 14 6 4.9204 10.3011 0.9526 15 6 5.0868 11.4839 1.8715 16 8 5.0596 11.3263 3.0739 17 7 5.2668 12.7167 1.3574 18 6 5.4187 13.7926 2.1934 19 1 5.3945 13.6523 3.2639 20 6 5.6038 15.0636 1.6632 21 7 5.7489 16.0950 2.4646 22 14 5.6449 15.3064 -0.1885 23 1 4.2701 15.5706 -0.6837 24 1 6.5197 16.4605 -0.5170 25 1 6.1777 14.0811 -0.8366 26 6 2.2799 2.1207 1.0896 27 6 2.1303 1.6808 2.5232 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9943 4.1406 -1.4095 34 1 3.5557 5.7288 -0.0239 35 1 3.0867 7.0697 2.4174 36 1 4.7648 6.4763 2.4164 37 1 5.1806 7.6535 0.2744 38 1 3.5027 8.2472 0.2748 39 1 6.7715 8.5440 1.8181 40 1 6.2330 9.6201 3.1300 41 1 5.7771 7.8999 3.1465 42 1 5.8074 10.1991 0.3275 43 1 4.0456 10.4526 0.3202 44 1 5.2889 12.8426 0.3959 45 1 5.8784 16.9822 2.0945 46 1 1.1258 1.9183 2.8733 47 1 2.2944 0.6054 2.5922 48 1 2.8627 2.2005 3.1410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266340225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:29 Heat of formation + Delta-G solvation = 15.253923 kcal Electronic energy + Delta-G solvation = -28040.953998 eV Core-core repulsion = 23940.142996 eV Total energy + Delta-G solvation = -4100.811002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87279 -39.41670 -38.72905 -36.84679 -35.19304 -34.60080 -33.83289 -32.53504 -31.66444 -30.59175 -29.33328 -27.94172 -27.45929 -25.41025 -24.48583 -23.69697 -22.60718 -21.23860 -20.59619 -19.83589 -19.33753 -18.25078 -17.88248 -16.46274 -16.26639 -16.08951 -15.79342 -15.64712 -15.29095 -14.96583 -14.92676 -14.48639 -14.34620 -14.03212 -13.77782 -13.55617 -13.49633 -13.34162 -13.07436 -13.05658 -12.88924 -12.75525 -12.47120 -12.41640 -12.02729 -11.92768 -11.81041 -11.51121 -11.34560 -11.21489 -11.07218 -11.02014 -10.58923 -10.00215 -9.95921 -9.83787 -9.52592 -9.23911 -8.87308 -8.57751 -8.16686 -7.98365 -6.29520 -3.80849 1.16640 1.83451 1.86701 3.01697 3.03006 3.07687 3.15945 3.28817 3.75198 3.90533 4.08368 4.11906 4.14073 4.33766 4.39384 4.51331 4.65199 4.75015 4.79877 4.88421 4.94060 5.04130 5.07151 5.15429 5.19825 5.22932 5.37873 5.42049 5.51511 5.52131 5.62860 5.68548 5.81566 5.85232 5.88066 5.95378 5.99511 6.05095 6.32551 6.44168 6.53439 7.11475 7.15032 7.26554 7.41908 7.60009 8.16441 8.16810 8.61920 8.97113 9.44105 9.85270 10.83635 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.001630 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.222564 B =17175.802234 C =17760.883804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.360 5.360 4 N -0.298 5.298 5 C 0.083 3.917 6 C -0.299 4.299 7 C 0.596 3.404 8 O -0.546 6.546 9 N -0.726 5.726 10 C 0.125 3.875 11 C 0.044 3.956 12 N -0.515 5.515 13 C 0.017 3.983 14 C 0.044 3.956 15 C 0.453 3.547 16 O -0.557 6.557 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.159 3.841 27 C -0.100 4.100 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.189 0.811 34 H 0.397 0.603 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 -32.760 -10.271 35.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.140 5.140 4 N -0.117 5.117 5 C -0.105 4.105 6 C -0.313 4.313 7 C 0.384 3.616 8 O -0.424 6.424 9 N -0.378 5.378 10 C 0.001 3.999 11 C -0.085 4.085 12 N -0.239 5.239 13 C -0.131 4.131 14 C -0.087 4.087 15 C 0.238 3.762 16 O -0.439 6.439 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C 0.027 3.973 27 C -0.158 4.158 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.206 0.794 34 H 0.230 0.770 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.035 0.965 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.093 -33.502 -9.216 35.676 hybrid contribution 0.897 0.888 -2.126 2.472 sum -7.196 -32.614 -11.341 35.272 Atomic orbital electron populations 1.22189 0.93778 1.03427 1.03528 1.21799 0.95640 0.77456 1.04863 1.48584 1.49816 1.12306 1.03337 1.77173 1.22424 1.04483 1.07597 1.24013 0.97051 0.95631 0.93817 1.19989 1.21354 0.96510 0.93475 1.17127 0.76287 0.81322 0.86905 1.90752 1.54992 1.82591 1.14109 1.45661 1.68469 1.13386 1.10250 1.21306 1.01285 0.84240 0.93067 1.22262 1.00192 0.91226 0.94794 1.61435 1.35431 1.01424 1.25615 1.22647 0.88848 1.03630 0.97960 1.21900 1.01303 0.90431 0.95087 1.19621 0.83879 0.83435 0.89244 1.90539 1.53909 1.84369 1.15079 1.42204 1.65980 1.07063 1.07859 1.19433 1.46695 0.83949 0.93212 0.86244 1.25032 0.97653 0.95231 0.98231 1.69623 1.48442 0.99396 1.34712 0.86673 0.78887 0.78540 0.85282 1.19621 1.20231 1.19558 1.21546 0.93946 0.90632 0.91171 1.20713 1.05255 1.01505 0.88371 0.91424 0.90138 0.91771 0.88260 0.88523 0.79423 0.76955 0.90163 0.91117 0.94512 0.90259 0.96545 0.88365 0.91612 0.93244 0.89177 0.79748 0.91642 0.89426 0.91184 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.24 37.16 0.38 -0.24 16 2 C 0.12 0.53 6.93 -4.05 -0.03 0.50 16 3 N -0.36 -2.90 3.58 -56.61 -0.20 -3.11 16 4 N -0.30 -2.86 12.50 30.86 0.39 -2.47 16 5 C 0.08 0.70 11.50 -16.98 -0.20 0.51 16 6 C -0.30 -2.99 6.13 -105.07 -0.64 -3.64 16 7 C 0.60 7.00 7.81 -12.52 -0.10 6.90 16 8 O -0.55 -8.14 14.84 5.28 0.08 -8.06 16 9 N -0.73 -7.04 5.55 -61.38 -0.34 -7.38 16 10 C 0.12 1.45 5.60 -4.04 -0.02 1.43 16 11 C 0.04 0.49 5.07 -3.82 -0.02 0.48 16 12 N -0.51 -8.04 4.50 -244.36 -1.10 -9.14 16 13 C 0.02 0.26 8.96 60.07 0.54 0.80 16 14 C 0.04 0.72 5.45 -4.97 -0.03 0.70 16 15 C 0.45 10.18 7.48 -10.99 -0.08 10.09 16 16 O -0.56 -14.78 13.91 5.54 0.08 -14.71 16 17 N -0.59 -13.97 5.09 -10.96 -0.06 -14.03 16 18 C -0.30 -8.57 10.16 -14.93 -0.15 -8.73 16 19 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.75 13.96 55.50 0.77 -24.97 16 22 Si 0.88 19.26 27.74 -169.99 -4.72 14.55 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 26 C 0.16 1.43 7.01 -81.60 -0.57 0.86 16 27 C -0.10 -0.69 9.56 36.01 0.34 -0.35 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.21 7.01 -51.93 -0.36 -0.15 16 33 H 0.19 0.94 7.50 -52.49 -0.39 0.55 16 34 H 0.40 2.64 7.43 -40.82 -0.30 2.34 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.90 6.55 -51.93 -0.34 0.56 16 37 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 1.90 5.82 -51.93 -0.30 1.59 16 41 H 0.07 0.93 6.47 -51.93 -0.34 0.60 16 42 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 43 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 44 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.29 7.05 -51.93 -0.37 -0.07 16 48 H 0.11 0.97 6.51 -51.93 -0.34 0.63 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -36.78 394.69 -6.98 -43.76 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.16 Total: 9.28 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -0.67 Total: 10.34 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.54 Total: -61.10 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.16 Total: -22.77 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.72 Total: 14.55 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.78 -6.98 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266340225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.014 kcal (2) G-P(sol) polarization free energy of solvation -36.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds