Wall clock time and date at job start Tue Mar 31 2020 20:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47366 * 2 1 4 4 N 1.39930 * 125.75865 * 270.00413 * 3 2 1 5 5 C 1.30448 * 108.90321 * 180.02562 * 4 3 2 6 6 C 1.41290 * 108.01917 * 359.97438 * 5 4 3 7 7 C 1.47428 * 126.41564 * 180.02562 * 6 5 4 8 8 O 1.21602 * 120.00252 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99946 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99997 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46997 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46906 * 179.97438 * 11 10 9 13 13 C 1.46905 * 111.00113 * 66.04488 * 12 11 10 14 14 C 1.46902 * 110.99865 * 189.99457 * 12 11 10 15 15 C 1.50700 * 109.47263 * 169.99839 * 14 12 11 16 16 O 1.21299 * 119.99652 * 0.02562 * 15 14 12 17 17 N 1.34777 * 120.00293 * 179.97438 * 15 14 12 18 18 C 1.37097 * 119.99972 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00147 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99717 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99742 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00161 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47009 * 90.00012 * 22 20 18 24 24 H 1.48496 * 109.46982 * 209.99812 * 22 20 18 25 25 H 1.48496 * 109.46850 * 329.99883 * 22 20 18 26 26 C 1.34259 * 125.75316 * 90.00408 * 3 2 1 27 27 C 1.50706 * 126.29028 * 0.25935 * 26 3 2 28 28 H 1.08997 * 109.47594 * 59.99319 * 1 2 3 29 29 H 1.08998 * 109.47601 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46665 * 299.99608 * 1 2 3 31 31 H 1.09005 * 109.47102 * 240.00235 * 2 1 3 32 32 H 1.08997 * 109.47594 * 120.00681 * 2 1 3 33 33 H 1.07998 * 125.99088 * 180.02562 * 5 4 3 34 34 H 0.97000 * 120.00137 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47084 * 299.98834 * 10 9 7 36 36 H 1.08992 * 109.47698 * 59.99282 * 10 9 7 37 37 H 1.09001 * 109.46942 * 299.99315 * 11 10 9 38 38 H 1.08992 * 109.47292 * 59.99267 * 11 10 9 39 39 H 1.09002 * 109.47002 * 60.00064 * 13 12 11 40 40 H 1.09000 * 109.47277 * 180.02562 * 13 12 11 41 41 H 1.08997 * 109.46932 * 299.99501 * 13 12 11 42 42 H 1.08997 * 109.47603 * 290.00071 * 14 12 11 43 43 H 1.09002 * 109.46837 * 50.00123 * 14 12 11 44 44 H 0.96992 * 119.99654 * 0.02562 * 17 15 14 45 45 H 0.97004 * 120.00036 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.47410 * 269.71497 * 27 26 3 47 47 H 1.09006 * 109.46750 * 29.72038 * 27 26 3 48 48 H 1.09002 * 109.46893 * 149.71614 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.2909 2.1521 -1.1355 5 6 2.7076 3.3289 -0.7573 6 6 2.7171 3.3560 0.6553 7 6 3.1184 4.4911 1.5063 8 8 3.0808 4.3864 2.7172 9 7 3.5260 5.6452 0.9420 10 6 3.9254 6.7729 1.7876 11 6 4.3418 7.9505 0.9039 12 7 4.7416 9.0815 1.7518 13 6 5.9594 8.7660 2.5104 14 6 4.9204 10.3011 0.9526 15 6 5.0868 11.4839 1.8715 16 8 5.0596 11.3263 3.0739 17 7 5.2668 12.7167 1.3574 18 6 5.4187 13.7926 2.1934 19 1 5.3945 13.6523 3.2639 20 6 5.6038 15.0636 1.6632 21 7 5.7489 16.0950 2.4646 22 14 5.6449 15.3064 -0.1885 23 1 4.2701 15.5706 -0.6837 24 1 6.5197 16.4605 -0.5170 25 1 6.1777 14.0811 -0.8366 26 6 2.2799 2.1207 1.0896 27 6 2.1303 1.6808 2.5232 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9943 4.1406 -1.4095 34 1 3.5557 5.7288 -0.0239 35 1 3.0867 7.0697 2.4174 36 1 4.7648 6.4763 2.4164 37 1 5.1806 7.6535 0.2744 38 1 3.5027 8.2472 0.2748 39 1 6.7715 8.5440 1.8181 40 1 6.2330 9.6201 3.1300 41 1 5.7771 7.8999 3.1465 42 1 5.8074 10.1991 0.3275 43 1 4.0456 10.4526 0.3202 44 1 5.2889 12.8426 0.3959 45 1 5.8784 16.9822 2.0945 46 1 1.1258 1.9183 2.8733 47 1 2.2944 0.6054 2.5922 48 1 2.8627 2.2005 3.1410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266340225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:29 Heat of formation + Delta-G solvation = -15.285320 kcal Electronic energy + Delta-G solvation = -28042.278279 eV Core-core repulsion = 23940.142996 eV Total energy + Delta-G solvation = -4102.135283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.49872 -40.56595 -40.13942 -38.14852 -36.02819 -35.71135 -35.32629 -33.72545 -33.13386 -31.35526 -30.19124 -29.16085 -28.19600 -26.93845 -25.44002 -24.61660 -23.42176 -22.27543 -21.32818 -21.17276 -20.51169 -20.14190 -18.61334 -17.72158 -17.25223 -16.97487 -16.78019 -16.72489 -16.48921 -16.12464 -15.88518 -15.54563 -15.35717 -15.19642 -14.85579 -14.75794 -14.44684 -14.31627 -14.15321 -14.07163 -13.90142 -13.67070 -13.36206 -13.24373 -13.07627 -12.89932 -12.86208 -12.54861 -12.51207 -12.38015 -12.25773 -12.06673 -11.95164 -11.82451 -11.44338 -10.90896 -10.41922 -10.34422 -10.20296 -10.12791 -9.57206 -9.20666 -8.38356 -5.99098 0.49304 1.16923 1.32194 1.35788 1.38455 1.46995 2.00319 2.13720 2.25948 2.47381 2.82446 3.17778 3.32285 3.50222 3.58285 3.87708 3.96124 4.01406 4.04686 4.12590 4.16804 4.21875 4.33692 4.39113 4.47496 4.48132 4.52482 4.63246 4.66229 4.67357 4.73704 4.81104 4.91910 4.97463 5.02138 5.11176 5.19602 5.25058 5.43149 5.48279 5.56247 5.90367 5.90981 6.02322 6.18633 6.51312 6.63315 6.68411 6.92353 7.34536 7.43834 8.02269 8.79476 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.001630 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.222564 B =17175.802234 C =17760.883804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.358 5.358 4 N -0.323 5.323 5 C 0.089 3.911 6 C -0.323 4.323 7 C 0.593 3.407 8 O -0.587 6.587 9 N -0.711 5.711 10 C 0.132 3.868 11 C 0.053 3.947 12 N -0.543 5.543 13 C 0.023 3.977 14 C 0.057 3.943 15 C 0.449 3.551 16 O -0.607 6.607 17 N -0.592 5.592 18 C -0.328 4.328 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.229 1.229 26 C 0.155 3.845 27 C -0.097 4.097 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.219 0.781 34 H 0.415 0.585 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 -35.105 -14.729 38.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.137 5.137 4 N -0.142 5.142 5 C -0.099 4.099 6 C -0.338 4.338 7 C 0.382 3.618 8 O -0.469 6.469 9 N -0.363 5.363 10 C 0.008 3.992 11 C -0.074 4.074 12 N -0.268 5.268 13 C -0.125 4.125 14 C -0.074 4.074 15 C 0.237 3.763 16 O -0.491 6.491 17 N -0.234 5.234 18 C -0.457 4.457 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.182 1.182 24 H -0.202 1.202 25 H -0.152 1.152 26 C 0.021 3.979 27 C -0.155 4.155 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.235 0.765 34 H 0.252 0.748 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.144 0.856 44 H 0.226 0.774 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.118 0.882 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.444 -35.896 -13.734 39.350 hybrid contribution 0.963 1.496 -0.578 1.870 sum -7.482 -34.400 -14.311 38.002 Atomic orbital electron populations 1.22153 0.93257 1.04614 1.02318 1.22182 0.96063 0.75912 1.06483 1.48889 1.49047 1.13175 1.02625 1.77130 1.23300 1.05141 1.08644 1.24473 0.95948 0.96057 0.93413 1.19997 1.23134 0.96497 0.94156 1.17441 0.75742 0.82045 0.86586 1.90733 1.56848 1.83362 1.15910 1.45446 1.67615 1.12250 1.11006 1.21073 0.99748 0.85125 0.93257 1.22254 1.01905 0.89111 0.94159 1.61301 1.35476 1.02803 1.27186 1.22469 0.89973 1.01810 0.98219 1.21836 1.04400 0.87471 0.93669 1.20978 0.81025 0.84637 0.89643 1.90533 1.55170 1.85356 1.18060 1.42018 1.66781 1.06375 1.08252 1.18997 1.48927 0.86459 0.91297 0.92860 1.26131 0.96073 0.93876 1.05390 1.69816 1.49515 1.00280 1.38153 0.85347 0.79653 0.79973 0.76418 1.18166 1.20230 1.15185 1.21866 0.93263 0.90686 0.92120 1.20710 1.04743 1.03121 0.86923 0.93187 0.87758 0.92332 0.87500 0.86083 0.76454 0.74843 0.92754 0.92523 0.91715 0.87939 0.94259 0.92861 0.90983 0.89873 0.85624 0.77448 0.91236 0.88979 0.88177 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.24 71.98 0.74 -0.15 16 2 C 0.11 0.72 6.93 86.38 0.60 1.32 16 3 N -0.36 -5.19 3.58 -333.01 -1.19 -6.38 16 4 N -0.32 -5.65 12.50 -56.28 -0.70 -6.36 16 5 C 0.09 1.33 11.50 85.65 0.99 2.31 16 6 C -0.32 -6.13 6.13 -20.15 -0.12 -6.25 16 7 C 0.59 13.60 7.81 86.66 0.68 14.27 16 8 O -0.59 -17.94 14.84 -4.04 -0.06 -18.00 16 9 N -0.71 -12.48 5.55 -466.38 -2.59 -15.07 16 10 C 0.13 2.91 5.60 86.38 0.48 3.39 16 11 C 0.05 1.00 5.07 86.30 0.44 1.44 16 12 N -0.54 -15.79 4.50 -927.03 -4.17 -19.96 16 13 C 0.02 0.71 8.96 127.69 1.14 1.86 16 14 C 0.06 1.67 5.45 85.56 0.47 2.13 16 15 C 0.45 20.11 7.48 87.66 0.66 20.76 16 16 O -0.61 -33.74 13.91 -3.09 -0.04 -33.79 16 17 N -0.59 -27.65 5.09 -306.98 -1.56 -29.21 16 18 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 19 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 20 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 21 N -0.94 -56.81 13.96 21.66 0.30 -56.51 16 22 Si 0.97 38.46 27.74 68.60 1.90 40.36 16 23 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 24 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.23 -7.52 6.52 99.48 0.65 -6.87 16 26 C 0.15 2.60 7.01 42.14 0.30 2.90 16 27 C -0.10 -1.26 9.56 71.24 0.68 -0.58 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.12 0.17 7.01 -2.39 -0.02 0.15 16 33 H 0.22 1.49 7.50 -2.91 -0.02 1.46 16 34 H 0.41 4.17 7.43 -92.71 -0.69 3.48 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.41 6.55 -2.39 -0.02 1.39 16 37 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 38 H 0.10 1.51 7.93 -2.39 -0.02 1.49 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 2.13 5.82 -2.39 -0.01 2.11 16 41 H 0.07 2.06 6.47 -2.39 -0.02 2.04 16 42 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 43 H 0.13 2.84 7.93 -2.39 -0.02 2.83 16 44 H 0.39 14.84 5.76 -92.71 -0.53 14.31 16 45 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.10 0.62 7.05 -2.38 -0.02 0.60 16 48 H 0.09 1.56 6.51 -2.39 -0.02 1.55 16 Total: -1.00 -88.95 394.69 -0.04 -88.99 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: -0.28 Total: 31.35 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 8.36 Total: 24.57 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -9.91 Total: -133.48 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.10 Total: -51.79 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.90 Total: 40.36 kcal Total: -88.95 -0.04 -88.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266340225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.705 kcal (2) G-P(sol) polarization free energy of solvation -88.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds