Wall clock time and date at job start Tue Mar 31 2020 20:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47119 * 2 1 4 4 C 1.46901 * 111.00063 * 75.70751 * 3 2 1 5 5 C 1.52996 * 109.47284 * 200.11246 * 4 3 2 6 6 N 1.46500 * 109.47315 * 181.81063 * 5 4 3 7 7 C 1.34773 * 120.00207 * 180.02562 * 6 5 4 8 8 O 1.21633 * 119.99925 * 4.78967 * 7 6 5 9 9 C 1.47161 * 120.00400 * 184.80037 * 7 6 5 10 10 C 1.38406 * 126.87929 * 354.68787 * 9 7 6 11 11 C 1.39677 * 105.35917 * 180.02562 * 10 9 7 12 12 N 1.30860 * 107.85875 * 0.24671 * 11 10 9 13 13 N 1.28438 * 110.93241 * 359.58237 * 12 11 10 14 14 C 1.46501 * 125.19654 * 180.17071 * 13 12 11 15 15 C 1.52995 * 109.47135 * 272.47832 * 14 13 12 16 16 C 1.46898 * 111.00159 * 199.66468 * 3 2 1 17 17 C 1.50698 * 109.47091 * 66.04264 * 16 3 2 18 18 O 1.21291 * 120.00207 * 0.02562 * 17 16 3 19 19 N 1.34779 * 119.99985 * 180.02562 * 17 16 3 20 20 C 1.37096 * 120.00358 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99545 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00433 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99711 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47299 * 60.00324 * 24 22 20 26 26 H 1.48505 * 109.46823 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47004 * 299.99965 * 24 22 20 28 28 H 1.08998 * 109.46967 * 184.20620 * 1 2 3 29 29 H 1.08999 * 109.46833 * 304.21179 * 1 2 3 30 30 H 1.09006 * 109.46851 * 64.20971 * 1 2 3 31 31 H 1.08999 * 109.47494 * 240.00096 * 2 1 3 32 32 H 1.09006 * 109.46905 * 119.99636 * 2 1 3 33 33 H 1.09008 * 109.46834 * 80.11671 * 4 3 2 34 34 H 1.09003 * 109.47413 * 320.11321 * 4 3 2 35 35 H 1.08999 * 109.46881 * 61.81139 * 5 4 3 36 36 H 1.09001 * 109.47584 * 301.81121 * 5 4 3 37 37 H 0.96997 * 119.99963 * 0.02562 * 6 5 4 38 38 H 1.07997 * 127.32146 * 0.02562 * 10 9 7 39 39 H 1.08007 * 126.06739 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.46904 * 32.47864 * 14 13 12 41 41 H 1.08997 * 109.47260 * 152.47818 * 14 13 12 42 42 H 1.09007 * 109.47088 * 59.99771 * 15 14 13 43 43 H 1.08998 * 109.47530 * 179.97438 * 15 14 13 44 44 H 1.08999 * 109.47251 * 299.99819 * 15 14 13 45 45 H 1.08997 * 109.47169 * 186.04906 * 16 3 2 46 46 H 1.09002 * 109.46960 * 306.04406 * 16 3 2 47 47 H 0.96999 * 119.99831 * 359.97438 * 19 17 16 48 48 H 0.97006 * 119.99957 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8760 1.9942 1.3290 5 6 1.9074 3.5182 1.1976 6 7 1.8075 4.1252 2.5271 7 6 1.8146 5.4665 2.6578 8 8 1.8160 6.1740 1.6684 9 6 1.8210 6.0754 3.9976 10 6 1.7180 5.4160 5.2101 11 6 1.7723 6.4178 6.1818 12 7 1.8919 7.5669 5.5673 13 7 1.9289 7.4045 4.2937 14 6 2.0607 8.4809 3.3087 15 6 0.6736 9.0208 2.9545 16 6 3.4128 1.4509 -0.4615 17 6 3.4812 1.0463 -1.9115 18 8 2.4691 0.7343 -2.5026 19 7 4.6672 1.0313 -2.5517 20 6 4.7295 0.6638 -3.8710 21 1 3.8281 0.3867 -4.3975 22 6 5.9520 0.6487 -4.5311 23 7 7.0487 0.9863 -3.8906 24 14 6.0367 0.1487 -6.3289 25 1 5.2028 1.0722 -7.1394 26 1 7.4451 0.2145 -6.7952 27 1 5.5296 -1.2388 -6.4812 28 1 -0.3633 -1.0249 0.0754 29 1 -0.3633 0.5778 0.8498 30 1 -0.3633 0.4471 -0.9254 31 1 1.8935 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 2.6959 1.6677 1.9689 34 1 0.9272 1.6869 1.7689 35 1 1.0688 3.8473 0.5840 36 1 2.8427 3.8232 0.7282 37 1 1.7363 3.5617 3.3134 38 1 1.6172 4.3528 5.3707 39 1 1.7200 6.2706 7.2505 40 1 2.6672 9.2841 3.7272 41 1 2.5404 8.0940 2.4097 42 1 0.1939 9.4077 3.8536 43 1 0.7716 9.8219 2.2220 44 1 0.0671 8.2176 2.5360 45 1 3.7845 2.4694 -0.3504 46 1 4.0252 0.7737 0.1339 47 1 5.4766 1.2811 -2.0791 48 1 7.9023 0.9754 -4.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266385713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:22 Heat of formation + Delta-G solvation = 13.451527 kcal Electronic energy + Delta-G solvation = -28757.112166 eV Core-core repulsion = 24656.223006 eV Total energy + Delta-G solvation = -4100.889160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83199 -39.67607 -38.75262 -36.93635 -35.27912 -34.48011 -33.82675 -31.70453 -31.31133 -30.65432 -30.06926 -29.07699 -26.34643 -24.59874 -24.20616 -23.47373 -22.52012 -21.46080 -21.07023 -20.04183 -19.17634 -18.29714 -17.86530 -16.62214 -16.46779 -16.06119 -15.91415 -15.57220 -15.11699 -14.92857 -14.70851 -14.67457 -14.27459 -14.09809 -13.96142 -13.76510 -13.63230 -13.30077 -13.17935 -12.88196 -12.44465 -12.38388 -12.19619 -11.78391 -11.65195 -11.56774 -11.48993 -11.48139 -11.11740 -11.10607 -10.83804 -10.54265 -10.43595 -10.29356 -10.21076 -9.58487 -9.45784 -9.38050 -9.21321 -8.44858 -8.00392 -7.92656 -6.41383 -3.82171 0.97212 2.05314 2.31437 2.86585 2.96126 3.20261 3.26069 3.30375 3.89239 3.98097 4.19787 4.22497 4.33584 4.65745 4.69220 4.76026 4.84974 4.94696 4.96020 5.08987 5.22185 5.24799 5.30370 5.32099 5.37936 5.40174 5.51965 5.56426 5.74976 5.75981 5.78589 5.84360 5.85477 5.92953 6.06021 6.12013 6.18688 6.27266 6.42526 6.44175 6.54477 7.11946 7.22802 7.32323 7.55340 7.74025 7.87526 8.06171 8.61759 9.18261 9.54510 10.06101 10.76314 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.002152 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.617039 B =13005.092561 C =14143.359185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 N -0.511 5.511 4 C 0.043 3.957 5 C 0.123 3.877 6 N -0.712 5.712 7 C 0.589 3.411 8 O -0.533 6.533 9 C -0.035 4.035 10 C -0.192 4.192 11 C -0.005 4.005 12 N -0.278 5.278 13 N -0.252 5.252 14 C 0.111 3.889 15 C -0.163 4.163 16 C 0.042 3.958 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.023 0.977 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.402 0.598 38 H 0.160 0.840 39 H 0.186 0.814 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 8.421 20.752 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.086 4.086 5 C 0.000 4.000 6 N -0.364 5.364 7 C 0.374 3.626 8 O -0.410 6.410 9 C -0.164 4.164 10 C -0.221 4.221 11 C -0.180 4.180 12 N -0.111 5.111 13 N -0.041 5.041 14 C -0.009 4.009 15 C -0.221 4.221 16 C -0.089 4.089 17 C 0.228 3.772 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.236 0.764 38 H 0.178 0.822 39 H 0.203 0.797 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.836 10.249 19.267 23.938 hybrid contribution 1.126 -1.648 0.346 2.026 sum -8.710 8.601 19.614 23.120 Atomic orbital electron populations 1.21700 0.95234 1.00570 1.02183 1.22171 0.96016 0.87796 1.01431 1.61398 1.19833 1.19594 1.22796 1.22255 1.01676 0.93354 0.91286 1.21425 1.03785 0.92383 0.82431 1.45587 1.74499 1.05648 1.10676 1.16868 0.76905 0.82530 0.86295 1.90828 1.49883 1.61302 1.38978 1.21441 1.13440 0.85945 0.95598 1.22250 1.08558 1.00792 0.90487 1.23572 1.05882 0.87959 1.00627 1.73207 1.19652 1.27391 0.90837 1.45898 1.48460 1.05335 1.04376 1.22228 1.00237 0.87924 0.90501 1.22073 0.95526 1.02121 1.02365 1.21948 0.88875 1.01916 0.96174 1.19689 0.84541 0.85002 0.87926 1.90509 1.34378 1.53213 1.67859 1.41867 1.07393 1.59360 1.11463 1.19639 0.95047 1.41982 0.86141 0.87951 1.25256 0.94818 0.97480 1.00384 1.69605 0.98743 1.48370 1.37645 0.85925 0.77044 0.79260 0.82034 1.19869 1.21005 1.19934 0.92933 0.93639 0.91503 0.88396 0.95906 0.94161 0.90025 0.89867 0.90780 0.76372 0.82232 0.79689 0.88402 0.86439 0.91941 0.89952 0.91494 0.89322 0.93346 0.77527 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 10.07 37.16 0.37 -1.46 16 2 C 0.05 0.80 5.19 -3.82 -0.02 0.78 16 3 N -0.51 -7.87 4.10 -236.07 -0.97 -8.84 16 4 C 0.04 0.48 4.92 -3.83 -0.02 0.46 16 5 C 0.12 1.44 5.82 -4.04 -0.02 1.41 16 6 N -0.71 -6.78 5.54 -61.47 -0.34 -7.12 16 7 C 0.59 6.92 7.79 -12.64 -0.10 6.82 16 8 O -0.53 -7.89 14.72 5.25 0.08 -7.81 16 9 C -0.04 -0.37 6.96 -82.06 -0.57 -0.94 16 10 C -0.19 -1.55 10.50 -38.98 -0.41 -1.96 16 11 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 12 N -0.28 -2.99 11.90 30.59 0.36 -2.63 16 13 N -0.25 -2.73 3.35 -57.14 -0.19 -2.92 16 14 C 0.11 1.01 6.52 -4.04 -0.03 0.98 16 15 C -0.16 -1.33 10.24 37.16 0.38 -0.95 16 16 C 0.04 0.72 5.27 -4.98 -0.03 0.69 16 17 C 0.44 10.20 7.30 -10.99 -0.08 10.12 16 18 O -0.58 -15.08 14.12 5.55 0.08 -15.00 16 19 N -0.56 -14.12 5.29 -10.97 -0.06 -14.18 16 20 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.51 6.67 -51.93 -0.35 0.16 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.85 5.85 -51.93 -0.30 1.54 16 32 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 33 H 0.04 0.39 7.99 -51.92 -0.42 -0.02 16 34 H 0.08 0.78 6.45 -51.93 -0.33 0.44 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.98 6.76 -51.93 -0.35 0.63 16 37 H 0.40 2.59 7.50 -40.82 -0.31 2.28 16 38 H 0.16 0.76 7.58 -52.49 -0.40 0.36 16 39 H 0.19 0.95 8.06 -52.48 -0.42 0.52 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.12 1.19 6.31 -51.93 -0.33 0.86 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.41 6.63 -51.93 -0.34 1.06 16 46 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -33.75 397.01 -7.50 -41.25 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.18 Total: 11.22 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -0.97 Total: 7.81 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.47 Total: -59.46 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.16 Total: -22.82 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.75 -7.50 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266385713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.701 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds