Wall clock time and date at job start Tue Mar 31 2020 20:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47119 * 2 1 4 4 C 1.46901 * 111.00063 * 75.70751 * 3 2 1 5 5 C 1.52996 * 109.47284 * 200.11246 * 4 3 2 6 6 N 1.46500 * 109.47315 * 181.81063 * 5 4 3 7 7 C 1.34773 * 120.00207 * 180.02562 * 6 5 4 8 8 O 1.21633 * 119.99925 * 4.78967 * 7 6 5 9 9 C 1.47161 * 120.00400 * 184.80037 * 7 6 5 10 10 C 1.38406 * 126.87929 * 354.68787 * 9 7 6 11 11 C 1.39677 * 105.35917 * 180.02562 * 10 9 7 12 12 N 1.30860 * 107.85875 * 0.24671 * 11 10 9 13 13 N 1.28438 * 110.93241 * 359.58237 * 12 11 10 14 14 C 1.46501 * 125.19654 * 180.17071 * 13 12 11 15 15 C 1.52995 * 109.47135 * 272.47832 * 14 13 12 16 16 C 1.46898 * 111.00159 * 199.66468 * 3 2 1 17 17 C 1.50698 * 109.47091 * 66.04264 * 16 3 2 18 18 O 1.21291 * 120.00207 * 0.02562 * 17 16 3 19 19 N 1.34779 * 119.99985 * 180.02562 * 17 16 3 20 20 C 1.37096 * 120.00358 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99545 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00433 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99711 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47299 * 60.00324 * 24 22 20 26 26 H 1.48505 * 109.46823 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47004 * 299.99965 * 24 22 20 28 28 H 1.08998 * 109.46967 * 184.20620 * 1 2 3 29 29 H 1.08999 * 109.46833 * 304.21179 * 1 2 3 30 30 H 1.09006 * 109.46851 * 64.20971 * 1 2 3 31 31 H 1.08999 * 109.47494 * 240.00096 * 2 1 3 32 32 H 1.09006 * 109.46905 * 119.99636 * 2 1 3 33 33 H 1.09008 * 109.46834 * 80.11671 * 4 3 2 34 34 H 1.09003 * 109.47413 * 320.11321 * 4 3 2 35 35 H 1.08999 * 109.46881 * 61.81139 * 5 4 3 36 36 H 1.09001 * 109.47584 * 301.81121 * 5 4 3 37 37 H 0.96997 * 119.99963 * 0.02562 * 6 5 4 38 38 H 1.07997 * 127.32146 * 0.02562 * 10 9 7 39 39 H 1.08007 * 126.06739 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.46904 * 32.47864 * 14 13 12 41 41 H 1.08997 * 109.47260 * 152.47818 * 14 13 12 42 42 H 1.09007 * 109.47088 * 59.99771 * 15 14 13 43 43 H 1.08998 * 109.47530 * 179.97438 * 15 14 13 44 44 H 1.08999 * 109.47251 * 299.99819 * 15 14 13 45 45 H 1.08997 * 109.47169 * 186.04906 * 16 3 2 46 46 H 1.09002 * 109.46960 * 306.04406 * 16 3 2 47 47 H 0.96999 * 119.99831 * 359.97438 * 19 17 16 48 48 H 0.97006 * 119.99957 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8760 1.9942 1.3290 5 6 1.9074 3.5182 1.1976 6 7 1.8075 4.1252 2.5271 7 6 1.8146 5.4665 2.6578 8 8 1.8160 6.1740 1.6684 9 6 1.8210 6.0754 3.9976 10 6 1.7180 5.4160 5.2101 11 6 1.7723 6.4178 6.1818 12 7 1.8919 7.5669 5.5673 13 7 1.9289 7.4045 4.2937 14 6 2.0607 8.4809 3.3087 15 6 0.6736 9.0208 2.9545 16 6 3.4128 1.4509 -0.4615 17 6 3.4812 1.0463 -1.9115 18 8 2.4691 0.7343 -2.5026 19 7 4.6672 1.0313 -2.5517 20 6 4.7295 0.6638 -3.8710 21 1 3.8281 0.3867 -4.3975 22 6 5.9520 0.6487 -4.5311 23 7 7.0487 0.9863 -3.8906 24 14 6.0367 0.1487 -6.3289 25 1 5.2028 1.0722 -7.1394 26 1 7.4451 0.2145 -6.7952 27 1 5.5296 -1.2388 -6.4812 28 1 -0.3633 -1.0249 0.0754 29 1 -0.3633 0.5778 0.8498 30 1 -0.3633 0.4471 -0.9254 31 1 1.8935 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 2.6959 1.6677 1.9689 34 1 0.9272 1.6869 1.7689 35 1 1.0688 3.8473 0.5840 36 1 2.8427 3.8232 0.7282 37 1 1.7363 3.5617 3.3134 38 1 1.6172 4.3528 5.3707 39 1 1.7200 6.2706 7.2505 40 1 2.6672 9.2841 3.7272 41 1 2.5404 8.0940 2.4097 42 1 0.1939 9.4077 3.8536 43 1 0.7716 9.8219 2.2220 44 1 0.0671 8.2176 2.5360 45 1 3.7845 2.4694 -0.3504 46 1 4.0252 0.7737 0.1339 47 1 5.4766 1.2811 -2.0791 48 1 7.9023 0.9754 -4.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266385713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:21 Heat of formation + Delta-G solvation = -12.564452 kcal Electronic energy + Delta-G solvation = -28758.240303 eV Core-core repulsion = 24656.223006 eV Total energy + Delta-G solvation = -4102.017297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.52839 -40.69459 -40.27321 -38.33775 -36.22279 -35.80087 -35.22810 -33.29546 -32.54388 -31.77777 -30.74035 -30.18778 -27.80220 -26.08183 -25.16945 -24.36438 -23.37977 -22.27487 -22.21002 -21.05827 -20.72612 -19.85270 -19.06242 -17.93312 -17.38777 -17.18460 -16.82524 -16.74618 -16.39504 -16.15224 -15.96304 -15.68080 -15.56391 -15.36641 -15.25860 -14.75220 -14.66300 -14.45563 -14.01190 -13.97206 -13.65537 -13.53357 -13.41679 -13.04580 -12.99398 -12.82966 -12.61337 -12.56546 -12.42258 -12.30515 -12.14726 -12.01599 -11.81948 -11.73590 -11.39442 -11.22514 -10.42171 -10.24221 -10.09092 -9.98456 -9.97938 -9.20754 -8.45355 -5.93602 0.21248 1.33806 1.39699 1.41273 1.52043 1.66480 2.03721 2.08012 2.14357 2.29934 2.86396 3.21853 3.38487 3.56353 3.56858 3.88630 3.98671 4.05147 4.08902 4.19528 4.20527 4.28286 4.29784 4.41217 4.48041 4.57453 4.59593 4.62690 4.67139 4.75901 4.80677 4.83600 4.88739 4.93660 5.04433 5.08283 5.21876 5.30186 5.41815 5.44709 5.57320 5.74664 5.91312 6.10560 6.22702 6.37711 6.62329 7.01586 7.10962 7.14706 7.58789 8.14721 8.71981 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.002152 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.617039 B =13005.092561 C =14143.359185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.534 5.534 4 C 0.052 3.948 5 C 0.131 3.869 6 N -0.693 5.693 7 C 0.587 3.413 8 O -0.573 6.573 9 C -0.061 4.061 10 C -0.174 4.174 11 C -0.007 4.007 12 N -0.302 5.302 13 N -0.266 5.266 14 C 0.107 3.893 15 C -0.154 4.154 16 C 0.056 3.944 17 C 0.441 3.559 18 O -0.611 6.611 19 N -0.577 5.577 20 C -0.330 4.330 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.420 0.580 38 H 0.197 0.803 39 H 0.218 0.782 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 7.781 23.379 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 N -0.259 5.259 4 C -0.076 4.076 5 C 0.007 3.993 6 N -0.346 5.346 7 C 0.373 3.627 8 O -0.453 6.453 9 C -0.190 4.190 10 C -0.202 4.202 11 C -0.182 4.182 12 N -0.134 5.134 13 N -0.055 5.055 14 C -0.012 4.012 15 C -0.212 4.212 16 C -0.075 4.075 17 C 0.228 3.772 18 O -0.497 6.497 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.258 0.742 38 H 0.214 0.786 39 H 0.235 0.765 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.090 0.910 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.957 9.588 21.947 25.938 hybrid contribution 1.098 -1.447 -0.371 1.854 sum -8.859 8.141 21.577 24.705 Atomic orbital electron populations 1.21647 0.93834 1.01821 1.01695 1.22092 0.97155 0.87522 1.00527 1.61304 1.18550 1.20198 1.25881 1.22266 1.03990 0.92018 0.89334 1.21181 1.01892 0.93131 0.83081 1.45329 1.73564 1.05135 1.10611 1.17134 0.76223 0.82907 0.86460 1.90810 1.51805 1.62308 1.40384 1.21498 1.15389 0.86397 0.95670 1.22731 1.06057 1.02437 0.89013 1.24228 1.04521 0.87282 1.02194 1.73192 1.20456 1.28862 0.90935 1.46035 1.49205 1.05662 1.04577 1.22256 1.00722 0.88180 0.90050 1.22004 0.94768 1.01751 1.02692 1.21784 0.90855 1.02935 0.91966 1.20787 0.83251 0.82913 0.90204 1.90485 1.35487 1.54186 1.69524 1.41951 1.08276 1.60243 1.10988 1.19602 0.94785 1.43888 0.87703 0.90317 1.26017 0.94155 0.97009 1.04209 1.69669 0.99079 1.48532 1.39053 0.85017 0.77536 0.78825 0.77142 1.19884 1.19571 1.19574 0.91328 0.91025 0.94522 0.92890 0.93048 0.91515 0.87586 0.92123 0.92639 0.74166 0.78626 0.76519 0.86911 0.88002 0.91718 0.88340 0.93625 0.87951 0.90978 0.77150 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 10.07 71.98 0.72 -2.54 16 2 C 0.05 1.57 5.19 86.31 0.45 2.01 16 3 N -0.53 -15.65 4.10 -900.78 -3.69 -19.34 16 4 C 0.05 0.98 4.92 86.30 0.42 1.40 16 5 C 0.13 2.89 5.82 86.38 0.50 3.39 16 6 N -0.69 -11.76 5.54 -466.64 -2.59 -14.35 16 7 C 0.59 13.42 7.79 86.59 0.67 14.10 16 8 O -0.57 -17.52 14.72 -4.14 -0.06 -17.58 16 9 C -0.06 -1.22 6.96 40.79 0.28 -0.93 16 10 C -0.17 -2.25 10.50 22.66 0.24 -2.01 16 11 C -0.01 -0.10 12.03 85.19 1.02 0.93 16 12 N -0.30 -6.05 11.90 -57.13 -0.68 -6.73 16 13 N -0.27 -5.59 3.35 -334.70 -1.12 -6.71 16 14 C 0.11 2.00 6.52 86.38 0.56 2.56 16 15 C -0.15 -2.57 10.24 71.98 0.74 -1.84 16 16 C 0.06 1.85 5.27 85.56 0.45 2.31 16 17 C 0.44 20.78 7.30 87.66 0.64 21.42 16 18 O -0.61 -33.27 14.12 -3.06 -0.04 -33.31 16 19 N -0.58 -29.66 5.29 -306.99 -1.62 -31.29 16 20 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 23 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 24 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.37 6.67 -2.39 -0.02 1.35 16 30 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.05 2.02 5.85 -2.39 -0.01 2.01 16 32 H 0.05 1.18 8.00 -2.38 -0.02 1.16 16 33 H 0.07 0.98 7.99 -2.38 -0.02 0.96 16 34 H 0.11 1.54 6.45 -2.39 -0.02 1.53 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.44 6.76 -2.39 -0.02 1.43 16 37 H 0.42 3.83 7.50 -92.71 -0.70 3.14 16 38 H 0.20 0.89 7.58 -2.91 -0.02 0.87 16 39 H 0.22 1.38 8.06 -2.91 -0.02 1.35 16 40 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 2.20 6.31 -2.39 -0.02 2.19 16 42 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.10 3.15 6.63 -2.39 -0.02 3.13 16 46 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 47 H 0.39 19.36 7.90 -92.71 -0.73 18.63 16 48 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -77.18 397.01 0.06 -77.11 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.43 Total: 34.30 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.99 Total: 22.47 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -9.42 Total: -128.37 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.10 Total: -50.89 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -77.18 0.06 -77.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266385713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.548 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds