Wall clock time and date at job start Tue Mar 31 2020 20:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46915 * 2 1 4 4 C 1.46909 * 110.99907 * 76.02788 * 3 2 1 5 5 C 1.53002 * 109.46661 * 199.54661 * 4 3 2 6 6 N 1.46506 * 109.46577 * 174.88793 * 5 4 3 7 7 C 1.34778 * 119.99739 * 180.02562 * 6 5 4 8 8 O 1.21618 * 120.00051 * 359.97438 * 7 6 5 9 9 C 1.47320 * 119.99745 * 180.27546 * 7 6 5 10 10 C 1.36424 * 126.23041 * 179.72343 * 9 7 6 11 11 N 1.35382 * 106.86629 * 179.97438 * 10 9 7 12 12 C 1.46504 * 126.13418 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46787 * 90.00059 * 12 11 10 14 14 C 1.35851 * 107.73156 * 359.97438 * 11 10 9 15 15 N 1.30174 * 109.00193 * 359.74674 * 14 11 10 16 16 C 1.46903 * 110.99979 * 199.97622 * 3 2 1 17 17 C 1.50704 * 109.46785 * 66.05101 * 16 3 2 18 18 O 1.21292 * 120.00013 * 359.97438 * 17 16 3 19 19 N 1.34775 * 119.99804 * 180.02562 * 17 16 3 20 20 C 1.37097 * 119.99568 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00278 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99790 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99828 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47210 * 89.99560 * 24 22 20 26 26 H 1.48498 * 109.47040 * 209.99959 * 24 22 20 27 27 H 1.48496 * 109.46929 * 329.99660 * 24 22 20 28 28 H 1.09000 * 109.47001 * 174.87201 * 1 2 3 29 29 H 1.09000 * 109.47422 * 294.87080 * 1 2 3 30 30 H 1.08999 * 109.47056 * 54.87298 * 1 2 3 31 31 H 1.08994 * 109.47358 * 239.99928 * 2 1 3 32 32 H 1.09008 * 109.46968 * 119.99730 * 2 1 3 33 33 H 1.08999 * 109.47214 * 79.54678 * 4 3 2 34 34 H 1.09003 * 109.46730 * 319.54247 * 4 3 2 35 35 H 1.08995 * 109.47789 * 54.88748 * 5 4 3 36 36 H 1.08997 * 109.47035 * 294.88302 * 5 4 3 37 37 H 0.96992 * 120.00123 * 359.97438 * 6 5 4 38 38 H 1.07998 * 126.56928 * 359.95130 * 10 9 7 39 39 H 1.08995 * 109.47322 * 209.99436 * 12 11 10 40 40 H 1.09000 * 109.47029 * 329.99746 * 12 11 10 41 41 H 1.09005 * 109.46913 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.46761 * 299.99318 * 13 12 11 43 43 H 1.09000 * 109.47592 * 60.00032 * 13 12 11 44 44 H 1.08001 * 125.49445 * 180.02562 * 14 11 10 45 45 H 1.09002 * 109.47146 * 186.04373 * 16 3 2 46 46 H 1.09000 * 109.47390 * 306.05140 * 16 3 2 47 47 H 0.96995 * 120.00252 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99731 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8829 1.9917 1.3309 5 6 1.9277 3.5158 1.2036 6 7 1.6697 4.1228 2.5118 7 6 1.6594 5.4642 2.6420 8 8 1.8649 6.1707 1.6736 9 6 1.4059 6.0746 3.9586 10 6 1.3721 7.4100 4.2352 11 7 1.1089 7.5307 5.5577 12 6 0.9806 8.7861 6.3020 13 6 -0.4783 9.2465 6.2776 14 6 0.9853 6.2789 6.0709 15 7 1.1567 5.4107 5.1163 16 6 3.4104 1.4517 -0.4685 17 6 3.4713 1.0500 -1.9198 18 8 2.4561 0.7383 -2.5059 19 7 4.6539 1.0361 -2.5660 20 6 4.7093 0.6701 -3.8861 21 1 3.8055 0.3926 -4.4079 22 6 5.9285 0.6563 -4.5526 23 7 7.0282 0.9945 -3.9177 24 14 6.0042 0.1570 -6.3511 25 1 5.8324 1.3588 -7.2061 26 1 7.3202 -0.4693 -6.6359 27 1 4.9202 -0.8157 -6.6407 28 1 -0.3633 -1.0236 -0.0919 29 1 -0.3634 0.4322 0.9323 30 1 -0.3633 0.5913 -0.8405 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.7005 1.6562 1.9690 34 1 0.9318 1.6917 1.7710 35 1 1.1677 3.8438 0.4946 36 1 2.9118 3.8219 0.8488 37 1 1.5055 3.5593 3.2840 38 1 1.5261 8.2166 3.5337 39 1 1.2951 8.6305 7.3339 40 1 1.6098 9.5476 5.8412 41 1 -0.5738 10.1807 6.8310 42 1 -0.7929 9.4022 5.2456 43 1 -1.1075 8.4849 6.7383 44 1 0.7740 6.0425 7.1033 45 1 3.7827 2.4702 -0.3576 46 1 4.0258 0.7734 0.1224 47 1 5.4657 1.2850 -2.0972 48 1 7.8793 0.9845 -4.3828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266427988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:03 Heat of formation + Delta-G solvation = -5.971159 kcal Electronic energy + Delta-G solvation = -28190.928495 eV Core-core repulsion = 24089.197105 eV Total energy + Delta-G solvation = -4101.731390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53467 -39.37387 -38.61650 -36.78367 -35.49593 -34.59059 -33.73947 -31.30195 -30.99485 -30.70318 -30.10423 -28.88912 -26.26098 -24.68835 -24.12757 -23.43187 -22.14531 -21.27107 -20.92707 -20.06139 -19.08253 -18.21477 -17.78902 -16.52979 -16.31578 -15.95668 -15.87959 -15.43170 -15.14133 -14.77946 -14.67084 -14.49829 -14.26937 -14.16589 -13.95541 -13.74645 -13.67102 -13.41885 -13.16281 -12.94985 -12.76238 -12.30322 -12.09685 -12.05363 -11.61508 -11.49331 -11.40763 -11.33208 -11.05840 -10.69335 -10.62831 -10.44158 -10.34054 -10.18653 -10.15292 -10.07066 -9.39787 -9.09909 -8.82262 -8.34614 -7.91029 -7.83058 -6.34928 -3.75383 1.33998 2.12864 2.18359 3.16847 3.23086 3.31184 3.37104 3.47728 3.97234 3.98336 4.06092 4.18279 4.25994 4.32928 4.35329 4.52887 4.83574 4.92751 4.95997 4.97313 5.12027 5.16789 5.26102 5.32857 5.38053 5.46928 5.55594 5.66692 5.67940 5.88543 5.93555 5.96562 6.00774 6.08512 6.11330 6.23060 6.35894 6.48018 6.54537 6.62355 6.64603 7.33667 7.36324 7.44638 7.61772 7.66678 8.13517 8.27631 8.69225 9.25142 9.62146 10.14094 10.82946 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.001862 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.195869 B =15034.333265 C =16098.013675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 N -0.512 5.512 4 C 0.045 3.955 5 C 0.122 3.878 6 N -0.715 5.715 7 C 0.602 3.398 8 O -0.542 6.542 9 C -0.061 4.061 10 C 0.035 3.965 11 N -0.458 5.458 12 C 0.098 3.902 13 C -0.172 4.172 14 C 0.184 3.816 15 N -0.464 5.464 16 C 0.042 3.958 17 C 0.445 3.555 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.270 1.270 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.022 0.978 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.406 0.594 38 H 0.188 0.812 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.210 0.790 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.247 13.427 26.353 31.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.084 4.084 5 C -0.002 4.002 6 N -0.366 5.366 7 C 0.387 3.613 8 O -0.419 6.419 9 C -0.190 4.190 10 C -0.104 4.104 11 N -0.140 5.140 12 C -0.024 4.024 13 C -0.230 4.230 14 C -0.099 4.099 15 N -0.183 5.183 16 C -0.089 4.089 17 C 0.230 3.770 18 O -0.459 6.459 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.241 0.759 38 H 0.205 0.795 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.227 0.773 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.918 13.209 24.970 30.660 hybrid contribution 1.162 0.158 0.429 1.248 sum -10.757 13.367 25.399 30.651 Atomic orbital electron populations 1.21692 0.95297 1.01014 1.01634 1.22160 0.96004 0.87951 1.01314 1.61452 1.19947 1.19493 1.22748 1.22251 1.01578 0.93659 0.90936 1.21365 1.02647 0.92193 0.83972 1.45697 1.72097 1.06415 1.12361 1.16851 0.76582 0.82075 0.85778 1.90830 1.50205 1.61945 1.38923 1.20602 1.13766 0.90878 0.93720 1.22615 1.03563 0.99020 0.85213 1.45548 1.51778 1.08503 1.08199 1.21977 0.99147 0.83753 0.97502 1.22188 0.94731 1.02407 1.03637 1.25152 1.05711 0.78651 1.00403 1.70599 1.16968 1.32308 0.98419 1.21951 0.89029 1.01979 0.95981 1.19721 0.84537 0.84791 0.87943 1.90506 1.34081 1.53118 1.68226 1.41869 1.07460 1.59542 1.11358 1.19694 0.95108 1.41780 0.86089 0.87919 1.25254 0.94824 0.97597 1.00337 1.69617 0.98696 1.48601 1.37480 0.85863 0.77484 0.78796 0.82163 1.20436 1.21022 1.19470 0.92911 0.93855 0.91405 0.88513 0.95941 0.94265 0.90167 0.90118 0.91197 0.75934 0.79540 0.88368 0.88586 0.90237 0.91562 0.91594 0.77347 0.89240 0.93402 0.77518 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.96 37.16 0.37 -1.64 16 2 C 0.05 0.88 5.18 -3.82 -0.02 0.86 16 3 N -0.51 -8.72 4.10 -236.05 -0.97 -9.69 16 4 C 0.04 0.59 4.92 -3.82 -0.02 0.58 16 5 C 0.12 1.74 5.71 -4.04 -0.02 1.72 16 6 N -0.71 -9.22 5.55 -61.41 -0.34 -9.56 16 7 C 0.60 8.71 7.81 -12.57 -0.10 8.61 16 8 O -0.54 -9.61 16.88 5.26 0.09 -9.52 16 9 C -0.06 -0.72 6.98 -83.09 -0.58 -1.30 16 10 C 0.03 0.32 11.26 -16.64 -0.19 0.13 16 11 N -0.46 -2.82 2.73 -118.36 -0.32 -3.15 16 12 C 0.10 0.22 6.84 -4.04 -0.03 0.19 16 13 C -0.17 -0.35 10.24 37.16 0.38 0.03 16 14 C 0.18 1.29 12.55 -89.90 -1.13 0.16 16 15 N -0.46 -4.92 11.01 -11.03 -0.12 -5.04 16 16 C 0.04 0.78 5.28 -4.97 -0.03 0.75 16 17 C 0.44 10.73 7.29 -10.98 -0.08 10.65 16 18 O -0.58 -15.66 14.12 5.55 0.08 -15.58 16 19 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 20 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.08 13.05 55.50 0.72 -24.36 16 24 Si 0.93 21.52 29.55 -169.99 -5.02 16.49 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.54 6.91 -51.93 -0.36 0.18 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.94 5.85 -51.93 -0.30 1.63 16 32 H 0.02 0.33 8.00 -51.92 -0.42 -0.09 16 33 H 0.04 0.48 8.00 -51.93 -0.42 0.07 16 34 H 0.08 0.96 6.58 -51.93 -0.34 0.62 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.08 6.95 -51.93 -0.36 0.72 16 37 H 0.41 4.49 8.19 -40.82 -0.33 4.16 16 38 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 40 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 42 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.21 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.09 1.56 6.71 -51.93 -0.35 1.21 16 46 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 47 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 402.71 15.07 6.07 6.07 Total: -1.00 -36.05 402.71 -8.91 -44.96 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -7.36 Total: 11.47 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -1.68 Total: 12.63 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -1.09 Total: -66.53 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.17 Total: -25.10 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.05 -8.91 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266427988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.992 kcal (2) G-P(sol) polarization free energy of solvation -36.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds