Wall clock time and date at job start Tue Mar 31 2020 20:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46915 * 2 1 4 4 C 1.46909 * 110.99907 * 76.02788 * 3 2 1 5 5 C 1.53002 * 109.46661 * 199.54661 * 4 3 2 6 6 N 1.46506 * 109.46577 * 174.88793 * 5 4 3 7 7 C 1.34778 * 119.99739 * 180.02562 * 6 5 4 8 8 O 1.21618 * 120.00051 * 359.97438 * 7 6 5 9 9 C 1.47320 * 119.99745 * 180.27546 * 7 6 5 10 10 C 1.36424 * 126.23041 * 179.72343 * 9 7 6 11 11 N 1.35382 * 106.86629 * 179.97438 * 10 9 7 12 12 C 1.46504 * 126.13418 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46787 * 90.00059 * 12 11 10 14 14 C 1.35851 * 107.73156 * 359.97438 * 11 10 9 15 15 N 1.30174 * 109.00193 * 359.74674 * 14 11 10 16 16 C 1.46903 * 110.99979 * 199.97622 * 3 2 1 17 17 C 1.50704 * 109.46785 * 66.05101 * 16 3 2 18 18 O 1.21292 * 120.00013 * 359.97438 * 17 16 3 19 19 N 1.34775 * 119.99804 * 180.02562 * 17 16 3 20 20 C 1.37097 * 119.99568 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00278 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99790 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99828 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47210 * 89.99560 * 24 22 20 26 26 H 1.48498 * 109.47040 * 209.99959 * 24 22 20 27 27 H 1.48496 * 109.46929 * 329.99660 * 24 22 20 28 28 H 1.09000 * 109.47001 * 174.87201 * 1 2 3 29 29 H 1.09000 * 109.47422 * 294.87080 * 1 2 3 30 30 H 1.08999 * 109.47056 * 54.87298 * 1 2 3 31 31 H 1.08994 * 109.47358 * 239.99928 * 2 1 3 32 32 H 1.09008 * 109.46968 * 119.99730 * 2 1 3 33 33 H 1.08999 * 109.47214 * 79.54678 * 4 3 2 34 34 H 1.09003 * 109.46730 * 319.54247 * 4 3 2 35 35 H 1.08995 * 109.47789 * 54.88748 * 5 4 3 36 36 H 1.08997 * 109.47035 * 294.88302 * 5 4 3 37 37 H 0.96992 * 120.00123 * 359.97438 * 6 5 4 38 38 H 1.07998 * 126.56928 * 359.95130 * 10 9 7 39 39 H 1.08995 * 109.47322 * 209.99436 * 12 11 10 40 40 H 1.09000 * 109.47029 * 329.99746 * 12 11 10 41 41 H 1.09005 * 109.46913 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.46761 * 299.99318 * 13 12 11 43 43 H 1.09000 * 109.47592 * 60.00032 * 13 12 11 44 44 H 1.08001 * 125.49445 * 180.02562 * 14 11 10 45 45 H 1.09002 * 109.47146 * 186.04373 * 16 3 2 46 46 H 1.09000 * 109.47390 * 306.05140 * 16 3 2 47 47 H 0.96995 * 120.00252 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99731 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8829 1.9917 1.3309 5 6 1.9277 3.5158 1.2036 6 7 1.6697 4.1228 2.5118 7 6 1.6594 5.4642 2.6420 8 8 1.8649 6.1707 1.6736 9 6 1.4059 6.0746 3.9586 10 6 1.3721 7.4100 4.2352 11 7 1.1089 7.5307 5.5577 12 6 0.9806 8.7861 6.3020 13 6 -0.4783 9.2465 6.2776 14 6 0.9853 6.2789 6.0709 15 7 1.1567 5.4107 5.1163 16 6 3.4104 1.4517 -0.4685 17 6 3.4713 1.0500 -1.9198 18 8 2.4561 0.7383 -2.5059 19 7 4.6539 1.0361 -2.5660 20 6 4.7093 0.6701 -3.8861 21 1 3.8055 0.3926 -4.4079 22 6 5.9285 0.6563 -4.5526 23 7 7.0282 0.9945 -3.9177 24 14 6.0042 0.1570 -6.3511 25 1 5.8324 1.3588 -7.2061 26 1 7.3202 -0.4693 -6.6359 27 1 4.9202 -0.8157 -6.6407 28 1 -0.3633 -1.0236 -0.0919 29 1 -0.3634 0.4322 0.9323 30 1 -0.3633 0.5913 -0.8405 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.7005 1.6562 1.9690 34 1 0.9318 1.6917 1.7710 35 1 1.1677 3.8438 0.4946 36 1 2.9118 3.8219 0.8488 37 1 1.5055 3.5593 3.2840 38 1 1.5261 8.2166 3.5337 39 1 1.2951 8.6305 7.3339 40 1 1.6098 9.5476 5.8412 41 1 -0.5738 10.1807 6.8310 42 1 -0.7929 9.4022 5.2456 43 1 -1.1075 8.4849 6.7383 44 1 0.7740 6.0425 7.1033 45 1 3.7827 2.4702 -0.3576 46 1 4.0258 0.7734 0.1224 47 1 5.4657 1.2850 -2.0972 48 1 7.8793 0.9845 -4.3828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266427988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:02 Heat of formation + Delta-G solvation = -32.754392 kcal Electronic energy + Delta-G solvation = -28192.089903 eV Core-core repulsion = 24089.197105 eV Total energy + Delta-G solvation = -4102.892798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.14805 -40.63281 -40.20776 -38.32413 -36.04000 -35.91244 -35.55615 -33.29414 -32.13941 -31.30298 -31.03988 -30.00362 -27.80907 -26.10494 -25.06857 -24.20964 -23.19761 -22.26368 -21.79798 -21.13666 -20.81893 -19.85185 -18.89492 -17.91847 -17.21017 -17.19359 -16.90626 -16.64214 -16.36893 -16.13102 -15.88171 -15.60560 -15.39605 -15.36693 -15.06390 -14.85346 -14.63743 -14.55760 -14.29691 -14.01645 -13.66597 -13.49027 -13.41858 -13.00955 -12.95750 -12.82601 -12.66449 -12.55978 -12.40412 -12.20561 -12.13002 -12.00537 -11.75809 -11.43049 -11.38033 -11.09962 -10.74778 -10.25021 -10.16751 -9.97881 -9.59899 -9.23258 -8.44876 -5.93362 0.56109 1.38531 1.41532 1.45913 1.54578 1.68798 2.07388 2.14700 2.31416 2.53293 2.89571 3.21941 3.38097 3.45060 3.78759 3.87871 3.91471 4.03584 4.11727 4.16477 4.20510 4.28734 4.39831 4.43417 4.45654 4.47457 4.58065 4.60757 4.71823 4.73048 4.81244 4.85818 4.91051 5.05457 5.12880 5.22387 5.24800 5.39152 5.42374 5.43120 5.43965 5.90756 6.10005 6.13158 6.20501 6.49038 6.62405 6.87591 7.14695 7.23515 7.58363 8.14249 8.72743 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.001862 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.195869 B =15034.333265 C =16098.013675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.532 5.532 4 C 0.055 3.945 5 C 0.130 3.870 6 N -0.703 5.703 7 C 0.596 3.404 8 O -0.587 6.587 9 C -0.097 4.097 10 C 0.039 3.961 11 N -0.449 5.449 12 C 0.093 3.907 13 C -0.169 4.169 14 C 0.198 3.802 15 N -0.495 5.495 16 C 0.055 3.945 17 C 0.442 3.558 18 O -0.610 6.610 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.417 0.583 38 H 0.193 0.807 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.252 0.748 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 13.956 29.390 34.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.073 4.073 3 N -0.258 5.258 4 C -0.073 4.073 5 C 0.005 3.995 6 N -0.354 5.354 7 C 0.383 3.617 8 O -0.468 6.468 9 C -0.225 4.225 10 C -0.102 4.102 11 N -0.130 5.130 12 C -0.027 4.027 13 C -0.226 4.226 14 C -0.086 4.086 15 N -0.214 5.214 16 C -0.076 4.076 17 C 0.229 3.771 18 O -0.496 6.496 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.254 0.746 38 H 0.210 0.790 39 H 0.146 0.854 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.268 0.732 45 H 0.119 0.881 46 H 0.089 0.911 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.103 13.738 28.071 33.514 hybrid contribution 1.146 0.071 -0.375 1.208 sum -10.957 13.809 27.696 32.830 Atomic orbital electron populations 1.21638 0.93817 1.01725 1.01764 1.22104 0.97223 0.87504 1.00519 1.61378 1.18854 1.20242 1.25292 1.22219 1.03505 0.92274 0.89274 1.21151 1.00942 0.93087 0.84277 1.45557 1.71525 1.06264 1.12099 1.17324 0.75646 0.82174 0.86513 1.90790 1.52465 1.62863 1.40667 1.20354 1.16902 0.92031 0.93219 1.22746 1.02450 0.98255 0.86748 1.45805 1.50229 1.09812 1.07162 1.22344 0.99498 0.82245 0.98607 1.22170 0.94465 1.03271 1.02727 1.25975 1.03078 0.78306 1.01287 1.70523 1.18629 1.33679 0.98554 1.21793 0.90815 1.02882 0.92142 1.20717 0.83363 0.82951 0.90030 1.90479 1.35158 1.54171 1.69779 1.41942 1.08233 1.60248 1.10940 1.19664 0.94927 1.43919 0.87563 0.90269 1.26051 0.94084 0.96967 1.04332 1.69683 0.99096 1.48526 1.39000 0.84917 0.77838 0.78484 0.77013 1.19847 1.19473 1.19683 0.91423 0.91309 0.94119 0.92602 0.93251 0.92098 0.88083 0.92486 0.92749 0.74644 0.78961 0.85394 0.87589 0.88337 0.93406 0.91848 0.73244 0.88113 0.91082 0.77162 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.96 71.98 0.72 -2.96 16 2 C 0.05 1.74 5.18 86.30 0.45 2.18 16 3 N -0.53 -17.87 4.10 -900.74 -3.70 -21.56 16 4 C 0.06 1.38 4.92 86.30 0.42 1.81 16 5 C 0.13 3.73 5.71 86.38 0.49 4.22 16 6 N -0.70 -18.10 5.55 -466.46 -2.59 -20.69 16 7 C 0.60 17.74 7.81 86.63 0.68 18.42 16 8 O -0.59 -21.89 16.88 -4.09 -0.07 -21.96 16 9 C -0.10 -2.30 6.98 40.50 0.28 -2.02 16 10 C 0.04 0.69 11.26 83.72 0.94 1.64 16 11 N -0.45 -4.49 2.73 -528.37 -1.44 -5.93 16 12 C 0.09 0.11 6.84 86.38 0.59 0.71 16 13 C -0.17 -0.27 10.24 71.98 0.74 0.46 16 14 C 0.20 2.21 12.55 180.10 2.26 4.47 16 15 N -0.49 -9.77 11.01 -188.81 -2.08 -11.85 16 16 C 0.05 2.03 5.28 85.56 0.45 2.48 16 17 C 0.44 21.98 7.29 87.66 0.64 22.62 16 18 O -0.61 -34.63 14.12 -3.07 -0.04 -34.67 16 19 N -0.58 -30.83 5.29 -306.98 -1.62 -32.45 16 20 C -0.33 -19.43 9.68 84.04 0.81 -18.61 16 21 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 22 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 23 N -0.92 -51.38 13.05 21.66 0.28 -51.10 16 24 Si 0.99 44.38 29.55 68.60 2.03 46.41 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.55 6.91 -2.39 -0.02 1.54 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 2.28 5.85 -2.39 -0.01 2.27 16 32 H 0.05 1.32 8.00 -2.38 -0.02 1.30 16 33 H 0.06 1.32 8.00 -2.39 -0.02 1.30 16 34 H 0.10 2.14 6.58 -2.39 -0.02 2.13 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.73 6.95 -2.39 -0.02 1.71 16 37 H 0.42 8.81 8.19 -92.71 -0.76 8.05 16 38 H 0.19 2.99 8.06 -2.91 -0.02 2.96 16 39 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.10 -0.19 8.14 -2.38 -0.02 -0.20 16 42 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.06 0.15 8.14 -2.39 -0.02 0.14 16 44 H 0.25 0.34 8.06 -2.91 -0.02 0.32 16 45 H 0.10 3.51 6.71 -2.39 -0.02 3.49 16 46 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 47 H 0.39 20.21 7.90 -92.71 -0.73 19.47 16 48 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -82.40 402.71 0.22 -82.19 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.50 Total: 36.57 kcal Atomic # 6 Polarization: 25.11 SS G_CDS: 9.94 Total: 35.05 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -11.14 Total: -143.59 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -0.11 Total: -56.63 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -82.40 0.22 -82.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266427988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.434 kcal (2) G-P(sol) polarization free energy of solvation -82.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds