Wall clock time and date at job start Tue Mar 31 2020 20:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47481 * 2 1 4 4 N 1.39935 * 125.75529 * 269.97583 * 3 2 1 5 5 C 1.30446 * 108.89796 * 180.02562 * 4 3 2 6 6 C 1.41292 * 108.02232 * 0.02562 * 5 4 3 7 7 C 1.47428 * 126.41283 * 179.97438 * 6 5 4 8 8 O 1.21612 * 119.99906 * 147.51477 * 7 6 5 9 9 N 1.34770 * 120.00094 * 327.51310 * 7 6 5 10 10 C 1.46500 * 120.00088 * 4.08642 * 9 7 6 11 11 C 1.46507 * 120.00141 * 184.08512 * 9 7 6 12 12 C 1.53004 * 109.46709 * 90.00232 * 11 9 7 13 13 N 1.46902 * 109.46940 * 180.02562 * 12 11 9 14 14 C 1.46899 * 111.00089 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47062 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00445 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99930 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99926 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00190 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99543 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00233 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99405 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47242 * 60.00269 * 22 20 18 24 24 H 1.48504 * 109.46933 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47688 * 299.99728 * 22 20 18 26 26 C 1.34263 * 125.75031 * 89.99669 * 3 2 1 27 27 C 1.50691 * 126.29500 * 0.24366 * 26 3 2 28 28 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47396 * 300.00217 * 1 2 3 30 30 H 1.09008 * 109.46982 * 60.00184 * 1 2 3 31 31 H 1.09007 * 109.47298 * 239.99831 * 2 1 3 32 32 H 1.09003 * 109.47156 * 120.00267 * 2 1 3 33 33 H 1.07995 * 125.98970 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47009 * 95.61506 * 10 9 7 35 35 H 1.09001 * 109.47211 * 215.61452 * 10 9 7 36 36 H 1.08999 * 109.46988 * 335.61806 * 10 9 7 37 37 H 1.08998 * 109.47018 * 209.99942 * 11 9 7 38 38 H 1.09002 * 109.46952 * 330.00759 * 11 9 7 39 39 H 1.08998 * 109.47144 * 299.99632 * 12 11 9 40 40 H 1.08990 * 109.47269 * 60.00238 * 12 11 9 41 41 H 1.00898 * 110.99830 * 56.04371 * 13 12 11 42 42 H 1.09001 * 109.46471 * 299.99538 * 14 13 12 43 43 H 1.08998 * 109.47413 * 59.99698 * 14 13 12 44 44 H 0.96997 * 120.00029 * 0.02562 * 17 15 14 45 45 H 0.97003 * 119.99784 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47251 * 269.71435 * 27 26 3 47 47 H 1.09000 * 109.47089 * 29.71369 * 27 26 3 48 48 H 1.08994 * 109.47218 * 149.71350 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2914 2.1519 -1.1356 5 6 2.7080 3.3287 -0.7573 6 6 2.7179 3.3557 0.6553 7 6 3.1203 4.4905 1.5061 8 8 2.5820 4.6641 2.5827 9 7 4.0847 5.3353 1.0909 10 6 4.6703 5.1798 -0.2429 11 6 4.5474 6.4094 1.9733 12 6 5.7137 5.9033 2.8244 13 7 6.1773 6.9800 3.7097 14 6 7.2997 6.5295 4.5435 15 6 7.7474 7.6585 5.4357 16 8 7.1871 8.7329 5.3819 17 7 8.7706 7.4744 6.2934 18 6 9.1783 8.5016 7.1048 19 1 8.6799 9.4584 7.0563 20 6 10.2335 8.3118 7.9887 21 7 10.8409 7.1480 8.0466 22 14 10.7894 9.7117 9.0936 23 1 9.6627 10.1320 9.9649 24 1 11.9243 9.2564 9.9362 25 1 11.2237 10.8597 8.2577 26 6 2.2798 2.1207 1.0896 27 6 2.1297 1.6811 2.5232 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9950 4.1402 -1.4096 34 1 4.1628 5.8441 -0.9424 35 1 5.7301 5.4321 -0.2061 36 1 4.5538 4.1474 -0.5727 37 1 4.8772 7.2568 1.3722 38 1 3.7310 6.7216 2.6246 39 1 5.3840 5.0559 3.4255 40 1 6.5301 5.5910 2.1733 41 1 5.4216 7.3308 4.2788 42 1 6.9813 5.6861 5.1562 43 1 8.1271 6.2223 3.9040 44 1 9.2190 6.6153 6.3362 45 1 11.5778 7.0157 8.6634 46 1 1.1251 1.9190 2.8729 47 1 2.2934 0.6057 2.5924 48 1 2.8621 2.2006 3.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266906590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:29 Heat of formation + Delta-G solvation = 14.089043 kcal Electronic energy + Delta-G solvation = -28334.726723 eV Core-core repulsion = 24233.865208 eV Total energy + Delta-G solvation = -4100.861515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92237 -39.57279 -38.22784 -36.28691 -35.33255 -34.72022 -33.77121 -32.57632 -31.22424 -30.72416 -29.33823 -27.76666 -27.04988 -25.84564 -24.55257 -23.86826 -22.61077 -21.73076 -20.53140 -19.29636 -19.02046 -17.85957 -17.60923 -16.51509 -16.31106 -16.21569 -15.89420 -15.49244 -15.22551 -14.96305 -14.57887 -14.46918 -14.18517 -13.85063 -13.76643 -13.54895 -13.47761 -13.21546 -13.13333 -12.97983 -12.88838 -12.75296 -12.46119 -12.27055 -12.08763 -11.95855 -11.86138 -11.47699 -11.45629 -11.23997 -11.05795 -10.91168 -10.41496 -10.18206 -9.97397 -9.76965 -9.46546 -8.98135 -8.77023 -8.40417 -8.02777 -7.92280 -6.38298 -3.79028 1.22140 1.88288 1.91353 2.78300 3.14474 3.23024 3.28199 3.33023 3.94341 3.95420 4.14484 4.17095 4.36953 4.38966 4.49794 4.52836 4.65579 4.72425 4.91312 4.98041 5.02131 5.07328 5.11664 5.14409 5.20832 5.25689 5.28953 5.33776 5.43806 5.46466 5.53984 5.59060 5.61683 5.81289 5.91263 5.98321 6.04435 6.05088 6.28627 6.40929 6.46695 7.18495 7.23707 7.26755 7.58354 7.69975 8.09778 8.11270 8.65131 9.21271 9.58052 10.09787 10.79449 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.001711 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.528297 B =16358.831362 C =16892.971476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.359 5.359 4 N -0.299 5.299 5 C 0.077 3.923 6 C -0.294 4.294 7 C 0.594 3.406 8 O -0.540 6.540 9 N -0.610 5.610 10 C 0.067 3.933 11 C 0.119 3.881 12 C 0.047 3.953 13 N -0.667 5.667 14 C 0.053 3.947 15 C 0.442 3.558 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.153 3.847 27 C -0.095 4.095 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.194 0.806 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.351 0.649 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.270 -17.827 -19.068 31.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.140 5.140 4 N -0.118 5.118 5 C -0.110 4.110 6 C -0.309 4.309 7 C 0.383 3.617 8 O -0.418 6.418 9 N -0.343 5.343 10 C -0.077 4.077 11 C -0.004 4.004 12 C -0.084 4.084 13 N -0.300 5.300 14 C -0.080 4.080 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C 0.021 3.979 27 C -0.153 4.153 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.211 0.789 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.170 0.830 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.675 -17.689 -19.906 31.962 hybrid contribution 0.522 -0.003 1.696 1.774 sum -17.153 -17.691 -18.210 30.640 Atomic orbital electron populations 1.22189 0.93819 1.03394 1.03513 1.21797 0.95613 0.77465 1.04863 1.48548 1.49893 1.12283 1.03261 1.77181 1.22429 1.04543 1.07614 1.24279 0.97197 0.95725 0.93795 1.19945 1.20681 0.96549 0.93723 1.17308 0.78627 0.80866 0.84939 1.90782 1.54544 1.73338 1.23131 1.47563 1.38319 1.31774 1.16616 1.22201 0.99352 1.02683 0.83436 1.21400 0.96985 0.88662 0.93349 1.22254 0.97085 0.93152 0.95907 1.60005 1.11693 1.33365 1.24912 1.21649 0.94909 0.96137 0.95306 1.19806 0.83901 0.89482 0.84112 1.90521 1.57922 1.27195 1.71017 1.41853 1.29516 1.14629 1.34093 1.19669 1.14238 0.94119 1.14891 0.87946 1.25260 0.96557 0.97741 0.98401 1.69609 1.23638 1.22884 1.38283 0.85909 0.78090 0.80567 0.79591 1.19923 1.21015 1.19893 1.21449 0.94401 0.90882 0.91125 1.20582 1.05034 1.01484 0.88207 0.90155 0.91775 0.91454 0.88242 0.88547 0.78904 0.92266 0.90856 0.89959 0.89299 0.89554 0.95247 0.91171 0.82954 0.93866 0.89659 0.77468 0.91864 0.89125 0.90968 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.24 37.15 0.38 -0.30 16 2 C 0.12 0.58 6.93 -4.05 -0.03 0.55 16 3 N -0.36 -3.03 3.58 -56.61 -0.20 -3.23 16 4 N -0.30 -2.94 12.50 30.86 0.39 -2.56 16 5 C 0.08 0.69 9.57 -16.98 -0.16 0.53 16 6 C -0.29 -3.14 5.53 -105.06 -0.58 -3.72 16 7 C 0.59 7.46 7.43 -12.52 -0.09 7.37 16 8 O -0.54 -8.53 15.53 5.27 0.08 -8.45 16 9 N -0.61 -6.53 2.87 -182.84 -0.53 -7.05 16 10 C 0.07 0.47 9.10 59.85 0.54 1.02 16 11 C 0.12 1.43 5.73 -4.04 -0.02 1.40 16 12 C 0.05 0.63 6.01 -3.82 -0.02 0.61 16 13 N -0.67 -11.29 6.12 -115.06 -0.70 -12.00 16 14 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 15 C 0.44 10.72 7.82 -10.99 -0.09 10.63 16 16 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 17 N -0.56 -14.62 5.29 -10.96 -0.06 -14.67 16 18 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 22 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.15 1.45 7.00 -81.60 -0.57 0.88 16 27 C -0.09 -0.71 9.49 36.00 0.34 -0.37 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.25 7.01 -51.93 -0.36 -0.11 16 33 H 0.19 1.18 6.15 -52.49 -0.32 0.86 16 34 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 35 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 36 H 0.08 0.54 4.73 -51.93 -0.25 0.30 16 37 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 38 H 0.09 1.17 7.37 -51.93 -0.38 0.79 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.35 6.23 8.43 -39.29 -0.33 5.89 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.34 7.04 -51.93 -0.37 -0.03 16 48 H 0.09 0.87 7.48 -51.93 -0.39 0.48 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -35.98 400.68 -7.06 -43.03 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.29 Total: 11.43 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -0.57 Total: 11.38 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.38 Total: -63.65 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.17 Total: -24.54 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.98 -7.06 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266906590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.122 kcal (2) G-P(sol) polarization free energy of solvation -35.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds