Wall clock time and date at job start Tue Mar 31 2020 20:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47481 * 2 1 4 4 N 1.39935 * 125.75529 * 269.97583 * 3 2 1 5 5 C 1.30446 * 108.89796 * 180.02562 * 4 3 2 6 6 C 1.41292 * 108.02232 * 0.02562 * 5 4 3 7 7 C 1.47428 * 126.41283 * 179.97438 * 6 5 4 8 8 O 1.21612 * 119.99906 * 147.51477 * 7 6 5 9 9 N 1.34770 * 120.00094 * 327.51310 * 7 6 5 10 10 C 1.46500 * 120.00088 * 4.08642 * 9 7 6 11 11 C 1.46507 * 120.00141 * 184.08512 * 9 7 6 12 12 C 1.53004 * 109.46709 * 90.00232 * 11 9 7 13 13 N 1.46902 * 109.46940 * 180.02562 * 12 11 9 14 14 C 1.46899 * 111.00089 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47062 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00445 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99930 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99926 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00190 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99543 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00233 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99405 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47242 * 60.00269 * 22 20 18 24 24 H 1.48504 * 109.46933 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47688 * 299.99728 * 22 20 18 26 26 C 1.34263 * 125.75031 * 89.99669 * 3 2 1 27 27 C 1.50691 * 126.29500 * 0.24366 * 26 3 2 28 28 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47396 * 300.00217 * 1 2 3 30 30 H 1.09008 * 109.46982 * 60.00184 * 1 2 3 31 31 H 1.09007 * 109.47298 * 239.99831 * 2 1 3 32 32 H 1.09003 * 109.47156 * 120.00267 * 2 1 3 33 33 H 1.07995 * 125.98970 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47009 * 95.61506 * 10 9 7 35 35 H 1.09001 * 109.47211 * 215.61452 * 10 9 7 36 36 H 1.08999 * 109.46988 * 335.61806 * 10 9 7 37 37 H 1.08998 * 109.47018 * 209.99942 * 11 9 7 38 38 H 1.09002 * 109.46952 * 330.00759 * 11 9 7 39 39 H 1.08998 * 109.47144 * 299.99632 * 12 11 9 40 40 H 1.08990 * 109.47269 * 60.00238 * 12 11 9 41 41 H 1.00898 * 110.99830 * 56.04371 * 13 12 11 42 42 H 1.09001 * 109.46471 * 299.99538 * 14 13 12 43 43 H 1.08998 * 109.47413 * 59.99698 * 14 13 12 44 44 H 0.96997 * 120.00029 * 0.02562 * 17 15 14 45 45 H 0.97003 * 119.99784 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47251 * 269.71435 * 27 26 3 47 47 H 1.09000 * 109.47089 * 29.71369 * 27 26 3 48 48 H 1.08994 * 109.47218 * 149.71350 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2914 2.1519 -1.1356 5 6 2.7080 3.3287 -0.7573 6 6 2.7179 3.3557 0.6553 7 6 3.1203 4.4905 1.5061 8 8 2.5820 4.6641 2.5827 9 7 4.0847 5.3353 1.0909 10 6 4.6703 5.1798 -0.2429 11 6 4.5474 6.4094 1.9733 12 6 5.7137 5.9033 2.8244 13 7 6.1773 6.9800 3.7097 14 6 7.2997 6.5295 4.5435 15 6 7.7474 7.6585 5.4357 16 8 7.1871 8.7329 5.3819 17 7 8.7706 7.4744 6.2934 18 6 9.1783 8.5016 7.1048 19 1 8.6799 9.4584 7.0563 20 6 10.2335 8.3118 7.9887 21 7 10.8409 7.1480 8.0466 22 14 10.7894 9.7117 9.0936 23 1 9.6627 10.1320 9.9649 24 1 11.9243 9.2564 9.9362 25 1 11.2237 10.8597 8.2577 26 6 2.2798 2.1207 1.0896 27 6 2.1297 1.6811 2.5232 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9950 4.1402 -1.4096 34 1 4.1628 5.8441 -0.9424 35 1 5.7301 5.4321 -0.2061 36 1 4.5538 4.1474 -0.5727 37 1 4.8772 7.2568 1.3722 38 1 3.7310 6.7216 2.6246 39 1 5.3840 5.0559 3.4255 40 1 6.5301 5.5910 2.1733 41 1 5.4216 7.3308 4.2788 42 1 6.9813 5.6861 5.1562 43 1 8.1271 6.2223 3.9040 44 1 9.2190 6.6153 6.3362 45 1 11.5778 7.0157 8.6634 46 1 1.1251 1.9190 2.8729 47 1 2.2934 0.6057 2.5924 48 1 2.8621 2.2006 3.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266906590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:28 Heat of formation + Delta-G solvation = -13.211508 kcal Electronic energy + Delta-G solvation = -28335.910563 eV Core-core repulsion = 24233.865208 eV Total energy + Delta-G solvation = -4102.045355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.60141 -40.50294 -40.10889 -37.44899 -36.31042 -35.83140 -35.40491 -33.28226 -33.21453 -31.61911 -30.20429 -28.49936 -28.10744 -27.15435 -25.76115 -24.81724 -23.61991 -22.58388 -21.31277 -20.97777 -19.96934 -19.82765 -18.36617 -17.89462 -17.25273 -17.19920 -16.87906 -16.69814 -16.46634 -16.00149 -15.91687 -15.55946 -15.36292 -15.16181 -14.80925 -14.75205 -14.30475 -14.11660 -13.99075 -13.79509 -13.70363 -13.53541 -13.50711 -13.33241 -13.24286 -12.93970 -12.88399 -12.75694 -12.64913 -12.42866 -12.29119 -12.11547 -12.05693 -11.88590 -11.50126 -10.91878 -10.40708 -10.37691 -10.02030 -9.79407 -9.52847 -9.41591 -8.46337 -5.95449 0.50815 1.15916 1.35606 1.40675 1.42424 1.53622 1.91961 2.04324 2.28990 2.31564 2.98549 3.20525 3.43134 3.54490 3.56957 3.83326 3.92480 4.04142 4.05490 4.12573 4.19374 4.29650 4.32440 4.33357 4.42680 4.47635 4.51477 4.57911 4.58446 4.69566 4.71638 4.78407 4.85380 4.93571 4.95952 5.00121 5.00924 5.18324 5.37992 5.40961 5.52418 5.84654 5.88931 6.06305 6.29999 6.40905 6.54121 6.59694 7.12101 7.20530 7.55252 8.10521 8.70830 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.001711 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.528297 B =16358.831362 C =16892.971476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.356 5.356 4 N -0.320 5.320 5 C 0.083 3.917 6 C -0.320 4.320 7 C 0.590 3.410 8 O -0.584 6.584 9 N -0.606 5.606 10 C 0.061 3.939 11 C 0.125 3.875 12 C 0.057 3.943 13 N -0.675 5.675 14 C 0.067 3.933 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.572 5.572 18 C -0.337 4.337 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.271 1.271 26 C 0.149 3.851 27 C -0.092 4.092 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.218 0.782 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.020 0.980 40 H 0.086 0.914 41 H 0.344 0.656 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.890 -19.263 -20.114 32.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.136 5.136 4 N -0.139 5.139 5 C -0.104 4.104 6 C -0.335 4.335 7 C 0.380 3.620 8 O -0.465 6.465 9 N -0.338 5.338 10 C -0.080 4.080 11 C 0.002 3.998 12 C -0.074 4.074 13 N -0.308 5.308 14 C -0.066 4.066 15 C 0.225 3.775 16 O -0.508 6.508 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.098 0.902 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.196 1.196 26 C 0.016 3.984 27 C -0.150 4.150 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.234 0.766 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.038 0.962 40 H 0.104 0.896 41 H 0.162 0.838 42 H 0.079 0.921 43 H 0.126 0.874 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.121 0.879 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.279 -19.173 -21.010 33.281 hybrid contribution 0.361 0.374 1.964 2.031 sum -16.918 -18.799 -19.046 31.661 Atomic orbital electron populations 1.22156 0.93319 1.04608 1.02272 1.22189 0.96017 0.75864 1.06546 1.48859 1.49049 1.13167 1.02514 1.77139 1.23127 1.05064 1.08582 1.24620 0.96349 0.96081 0.93310 1.19962 1.22537 0.96570 0.94390 1.17641 0.78506 0.81281 0.84580 1.90750 1.56226 1.74469 1.25065 1.47624 1.37761 1.30837 1.17589 1.22445 1.00001 1.03771 0.81825 1.21242 0.95712 0.89462 0.93426 1.22244 0.97995 0.91741 0.95374 1.60027 1.11240 1.34797 1.24713 1.21521 0.96150 0.93889 0.95032 1.20808 0.82608 0.90384 0.83693 1.90490 1.58895 1.29379 1.72077 1.41915 1.30207 1.14356 1.34436 1.19664 1.15667 0.94275 1.17024 0.90232 1.26062 0.95908 1.00240 0.99034 1.69670 1.23707 1.24105 1.38593 0.84966 0.77904 0.77577 0.77740 1.19737 1.19419 1.19642 1.21743 0.93697 0.90881 0.92088 1.20595 1.04436 1.03163 0.86794 0.87706 0.92463 0.93168 0.87339 0.86118 0.76590 0.90068 0.89851 0.89273 0.87920 0.91615 0.96181 0.89559 0.83798 0.92109 0.87415 0.76959 0.91258 0.88974 0.87887 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 71.98 0.74 -0.32 16 2 C 0.11 0.82 6.93 86.38 0.60 1.42 16 3 N -0.36 -5.53 3.58 -333.00 -1.19 -6.72 16 4 N -0.32 -5.91 12.50 -56.28 -0.70 -6.61 16 5 C 0.08 1.39 9.57 85.65 0.82 2.21 16 6 C -0.32 -6.67 5.53 -20.15 -0.11 -6.78 16 7 C 0.59 14.87 7.43 86.66 0.64 15.51 16 8 O -0.58 -19.14 15.53 -4.07 -0.06 -19.20 16 9 N -0.61 -12.46 2.87 -850.64 -2.44 -14.91 16 10 C 0.06 0.74 9.10 127.77 1.16 1.90 16 11 C 0.12 2.94 5.73 86.38 0.49 3.43 16 12 C 0.06 1.47 6.01 86.30 0.52 1.99 16 13 N -0.68 -22.53 6.12 -517.94 -3.17 -25.71 16 14 C 0.07 2.40 6.17 85.56 0.53 2.92 16 15 C 0.44 21.47 7.82 87.66 0.69 22.15 16 16 O -0.62 -35.36 15.78 -3.07 -0.05 -35.40 16 17 N -0.57 -30.03 5.29 -306.98 -1.62 -31.65 16 18 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 19 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 21 N -0.92 -50.14 13.05 21.66 0.28 -49.85 16 22 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.15 2.71 7.00 42.14 0.29 3.01 16 27 C -0.09 -1.31 9.49 71.23 0.68 -0.64 16 28 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.12 0.29 7.01 -2.39 -0.02 0.27 16 33 H 0.22 2.21 6.15 -2.91 -0.02 2.19 16 34 H 0.08 0.65 7.87 -2.39 -0.02 0.63 16 35 H 0.08 0.87 8.11 -2.39 -0.02 0.85 16 36 H 0.09 0.99 4.73 -2.39 -0.01 0.98 16 37 H 0.10 2.13 8.07 -2.39 -0.02 2.11 16 38 H 0.07 1.83 7.37 -2.39 -0.02 1.82 16 39 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.34 12.37 8.43 -89.70 -0.76 11.61 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 44 H 0.40 19.72 7.90 -92.71 -0.73 18.98 16 45 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.10 0.76 7.04 -2.39 -0.02 0.74 16 48 H 0.07 1.41 7.48 -2.39 -0.02 1.39 16 Total: -1.00 -79.29 400.68 0.90 -78.39 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: -0.49 Total: 38.31 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 8.33 Total: 27.94 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -8.85 Total: -135.44 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -0.11 Total: -54.60 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -79.29 0.90 -78.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266906590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.174 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds