Wall clock time and date at job start Tue Mar 31 2020 20:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 N 1.46500 * 109.47210 * 120.00092 * 2 1 3 5 5 C 1.35032 * 124.88597 * 275.00558 * 4 2 1 6 6 C 1.35367 * 107.22837 * 180.02562 * 5 4 2 7 7 C 1.41504 * 105.50330 * 0.26137 * 6 5 4 8 8 C 1.47705 * 126.51490 * 179.70452 * 7 6 5 9 9 O 1.21564 * 120.00576 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99706 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00007 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47307 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47580 * 64.99579 * 12 11 10 14 14 C 1.53002 * 109.47316 * 185.00266 * 12 11 10 15 15 N 1.46911 * 109.46910 * 304.99886 * 12 11 10 16 16 C 1.46897 * 110.99819 * 154.99600 * 15 12 11 17 17 C 1.50700 * 109.47082 * 179.97438 * 16 15 12 18 18 O 1.21301 * 119.99758 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00234 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99894 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00567 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99872 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99749 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00014 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47037 * 89.99570 * 24 22 20 26 26 H 1.48496 * 109.47276 * 210.00253 * 24 22 20 27 27 H 1.48509 * 109.47001 * 329.99806 * 24 22 20 28 28 N 1.28472 * 124.88137 * 95.02500 * 4 2 1 29 29 H 1.08992 * 109.46950 * 299.99644 * 1 2 3 30 30 H 1.09002 * 109.46888 * 59.99923 * 1 2 3 31 31 H 1.09004 * 109.46726 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47185 * 240.00300 * 2 1 3 33 33 H 1.09007 * 109.47340 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47631 * 299.99952 * 3 2 1 35 35 H 1.09005 * 109.47313 * 60.00466 * 3 2 1 36 36 H 1.07999 * 126.38674 * 359.97438 * 5 4 2 37 37 H 1.08002 * 127.24456 * 179.97438 * 6 5 4 38 38 H 0.97003 * 120.00212 * 0.02562 * 10 8 7 39 39 H 1.09005 * 109.46817 * 299.99967 * 11 10 8 40 40 H 1.09002 * 109.47133 * 60.00013 * 11 10 8 41 41 H 1.08994 * 109.46781 * 59.99529 * 14 12 11 42 42 H 1.08997 * 109.46803 * 179.97438 * 14 12 11 43 43 H 1.08995 * 109.46595 * 299.99516 * 14 12 11 44 44 H 1.00899 * 110.99380 * 31.04862 * 15 12 11 45 45 H 1.08990 * 109.47747 * 300.00379 * 16 15 12 46 46 H 1.09007 * 109.46839 * 60.00419 * 16 15 12 47 47 H 0.96995 * 120.00151 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99890 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1847 -0.1152 2.4064 6 6 2.6490 -1.0714 3.2445 7 6 2.7538 -2.2441 2.4595 8 6 3.2227 -3.5683 2.9160 9 8 3.5667 -3.7264 4.0711 10 7 3.2693 -4.6014 2.0516 11 6 3.7350 -5.9146 2.5040 12 6 3.6906 -6.9018 1.3360 13 1 4.4020 -6.5915 0.5707 14 6 4.0571 -8.3005 1.8361 15 7 2.3369 -6.9249 0.7656 16 6 2.3651 -7.3512 -0.6398 17 6 0.9619 -7.3633 -1.1894 18 8 0.0301 -7.0472 -0.4800 19 7 0.7424 -7.7252 -2.4689 20 6 -0.5342 -7.7356 -2.9689 21 1 -1.3638 -7.4534 -2.3377 22 6 -0.7606 -8.1092 -4.2880 23 7 -1.9842 -8.1197 -4.7671 24 14 0.6742 -8.5980 -5.3797 25 1 0.9069 -10.0602 -5.2661 26 1 0.3624 -8.2544 -6.7904 27 1 1.8940 -7.8678 -4.9505 28 7 2.3503 -1.9308 1.2444 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.9853 0.9159 2.6584 37 1 2.8930 -0.9611 4.2908 38 1 2.9952 -4.4752 1.1297 39 1 4.7584 -5.8309 2.8699 40 1 3.0902 -6.2719 3.3070 41 1 3.3456 -8.6107 2.6013 42 1 4.0250 -9.0038 1.0040 43 1 5.0614 -8.2834 2.2593 44 1 1.8887 -6.0260 0.8619 45 1 2.9761 -6.6580 -1.2177 46 1 2.7899 -8.3529 -0.7072 47 1 1.4874 -7.9782 -3.0360 48 1 -2.1422 -8.3801 -5.6880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266975151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:58 Heat of formation + Delta-G solvation = 12.066516 kcal Electronic energy + Delta-G solvation = -28940.347036 eV Core-core repulsion = 24839.397818 eV Total energy + Delta-G solvation = -4100.949218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.87976 -39.63204 -38.52919 -37.00805 -36.12850 -34.14784 -33.73823 -31.70029 -31.18295 -31.11665 -30.34768 -27.82335 -26.94889 -26.32074 -24.13110 -23.64297 -22.56643 -20.73305 -20.53963 -20.01119 -19.39992 -18.45573 -18.01228 -17.05441 -16.30341 -16.24760 -16.03054 -15.44864 -15.37983 -14.97538 -14.81346 -14.45228 -14.25361 -13.99388 -13.79679 -13.41433 -13.33066 -13.18034 -12.87138 -12.78814 -12.66451 -12.64590 -12.51206 -12.18517 -12.00726 -11.87152 -11.79282 -11.64325 -11.54430 -11.20120 -11.06837 -10.88999 -10.60356 -10.21822 -9.98075 -9.57557 -9.46389 -9.28249 -9.08523 -8.58429 -8.21414 -8.16406 -6.31559 -3.82829 1.46911 1.97307 2.16640 3.01299 3.06193 3.07276 3.14081 3.37702 3.74002 3.96067 4.04384 4.10037 4.32728 4.47031 4.52672 4.53571 4.65544 4.79280 4.95273 4.98763 5.11809 5.14288 5.21630 5.24578 5.25844 5.32048 5.42121 5.52759 5.55121 5.58401 5.60090 5.70565 5.73241 5.75359 5.85043 5.92651 5.95730 6.19303 6.23121 6.36799 6.57572 7.07382 7.32926 7.52682 7.57996 7.76540 8.13700 8.14338 8.59630 8.94826 9.42191 9.82880 10.81619 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008653 B = 0.003046 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.248246 B = 9191.282812 C =11764.140512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.139 3.861 3 C -0.164 4.164 4 N -0.273 5.273 5 C -0.019 4.019 6 C -0.179 4.179 7 C -0.022 4.022 8 C 0.609 3.391 9 O -0.535 6.535 10 N -0.720 5.720 11 C 0.118 3.882 12 C 0.071 3.929 13 H 0.049 0.951 14 C -0.138 4.138 15 N -0.664 5.664 16 C 0.046 3.954 17 C 0.450 3.550 18 O -0.562 6.562 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 N -0.255 5.255 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.405 0.595 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.350 0.650 45 H 0.045 0.955 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.165 16.933 9.201 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.039 3.961 3 C -0.222 4.222 4 N -0.062 5.062 5 C -0.162 4.162 6 C -0.207 4.207 7 C -0.182 4.182 8 C 0.394 3.606 9 O -0.410 6.410 10 N -0.372 5.372 11 C -0.005 4.005 12 C -0.039 4.039 13 H 0.067 0.933 14 C -0.196 4.196 15 N -0.300 5.300 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.444 6.444 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 N -0.091 5.091 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.196 0.804 37 H 0.179 0.821 38 H 0.241 0.759 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.172 0.828 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.272 15.964 9.408 22.793 hybrid contribution 1.263 0.786 -1.269 1.955 sum 14.535 16.750 8.139 23.623 Atomic orbital electron populations 1.22248 0.92469 1.04306 1.03518 1.21659 0.95888 0.93245 0.85340 1.22196 1.02388 0.93492 1.04080 1.45784 1.44934 1.05826 1.09648 1.22751 1.06971 1.00890 0.85572 1.21741 1.06724 0.91052 1.01197 1.21882 1.08954 0.96142 0.91219 1.16834 0.77147 0.81820 0.84813 1.90781 1.48997 1.83584 1.17622 1.45891 1.67050 1.10061 1.14227 1.21647 1.00628 0.80854 0.97407 1.21820 0.90645 0.96056 0.95384 0.93306 1.21735 1.00782 0.95070 1.02011 1.60136 1.16733 1.36508 1.16579 1.21789 0.96527 1.01528 0.88788 1.19703 0.89944 0.84124 0.82677 1.90580 1.44228 1.51681 1.57913 1.42197 1.08807 1.61551 1.10495 1.19434 0.84154 1.43181 0.96528 0.86308 1.25036 0.96640 0.97701 0.96791 1.69624 1.19132 1.47310 1.16128 0.86671 0.82065 0.79506 0.81128 1.19587 1.20223 1.19550 1.73536 1.15469 0.97936 1.22206 0.91623 0.89815 0.90851 0.87048 0.91322 0.89480 0.91228 0.80358 0.82132 0.75903 0.90581 0.90024 0.91384 0.92055 0.92412 0.82811 0.93731 0.89263 0.79716 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 9.52 37.16 0.35 -0.82 16 2 C 0.14 1.00 3.80 -67.93 -0.26 0.74 16 3 C -0.16 -0.69 8.80 37.16 0.33 -0.37 16 4 N -0.27 -2.77 3.22 -54.83 -0.18 -2.95 16 5 C -0.02 -0.17 10.54 -17.17 -0.18 -0.35 16 6 C -0.18 -2.03 10.81 -39.36 -0.43 -2.46 16 7 C -0.02 -0.30 7.13 -82.77 -0.59 -0.89 16 8 C 0.61 9.00 7.82 -12.39 -0.10 8.90 16 9 O -0.53 -9.10 16.93 5.31 0.09 -9.01 16 10 N -0.72 -9.44 4.99 -61.29 -0.31 -9.74 16 11 C 0.12 1.42 5.31 -4.04 -0.02 1.40 16 12 C 0.07 0.84 2.81 -67.71 -0.19 0.65 16 13 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 14 C -0.14 -1.46 9.42 37.16 0.35 -1.11 16 15 N -0.66 -10.39 5.93 -107.99 -0.64 -11.03 16 16 C 0.05 0.76 5.96 -4.98 -0.03 0.74 16 17 C 0.45 10.23 7.82 -10.99 -0.09 10.15 16 18 O -0.56 -15.24 15.78 5.54 0.09 -15.15 16 19 N -0.59 -14.04 5.09 -10.96 -0.06 -14.10 16 20 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 24 Si 0.88 19.27 27.74 -169.99 -4.71 14.55 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 28 N -0.26 -3.34 11.67 33.42 0.39 -2.95 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.23 7.05 -51.93 -0.37 -0.14 16 36 H 0.18 0.91 7.16 -52.49 -0.38 0.53 16 37 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.41 5.22 7.10 -40.82 -0.29 4.93 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.35 5.87 6.41 -39.29 -0.25 5.62 16 45 H 0.04 0.64 8.05 -51.93 -0.42 0.22 16 46 H 0.09 1.31 7.44 -51.92 -0.39 0.93 16 47 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -36.08 400.83 -6.93 -43.01 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -7.32 Total: 17.43 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.10 Total: 8.84 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.01 Total: -65.70 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.18 Total: -24.16 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.08 -6.93 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266975151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.073 kcal (2) G-P(sol) polarization free energy of solvation -36.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds