Wall clock time and date at job start Tue Mar 31 2020 20:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 N 1.46500 * 109.47210 * 120.00092 * 2 1 3 5 5 C 1.35032 * 124.88597 * 275.00558 * 4 2 1 6 6 C 1.35367 * 107.22837 * 180.02562 * 5 4 2 7 7 C 1.41504 * 105.50330 * 0.26137 * 6 5 4 8 8 C 1.47705 * 126.51490 * 179.70452 * 7 6 5 9 9 O 1.21564 * 120.00576 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99706 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00007 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47307 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47580 * 64.99579 * 12 11 10 14 14 C 1.53002 * 109.47316 * 185.00266 * 12 11 10 15 15 N 1.46911 * 109.46910 * 304.99886 * 12 11 10 16 16 C 1.46897 * 110.99819 * 154.99600 * 15 12 11 17 17 C 1.50700 * 109.47082 * 179.97438 * 16 15 12 18 18 O 1.21301 * 119.99758 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00234 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99894 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00567 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99872 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99749 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00014 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47037 * 89.99570 * 24 22 20 26 26 H 1.48496 * 109.47276 * 210.00253 * 24 22 20 27 27 H 1.48509 * 109.47001 * 329.99806 * 24 22 20 28 28 N 1.28472 * 124.88137 * 95.02500 * 4 2 1 29 29 H 1.08992 * 109.46950 * 299.99644 * 1 2 3 30 30 H 1.09002 * 109.46888 * 59.99923 * 1 2 3 31 31 H 1.09004 * 109.46726 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47185 * 240.00300 * 2 1 3 33 33 H 1.09007 * 109.47340 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47631 * 299.99952 * 3 2 1 35 35 H 1.09005 * 109.47313 * 60.00466 * 3 2 1 36 36 H 1.07999 * 126.38674 * 359.97438 * 5 4 2 37 37 H 1.08002 * 127.24456 * 179.97438 * 6 5 4 38 38 H 0.97003 * 120.00212 * 0.02562 * 10 8 7 39 39 H 1.09005 * 109.46817 * 299.99967 * 11 10 8 40 40 H 1.09002 * 109.47133 * 60.00013 * 11 10 8 41 41 H 1.08994 * 109.46781 * 59.99529 * 14 12 11 42 42 H 1.08997 * 109.46803 * 179.97438 * 14 12 11 43 43 H 1.08995 * 109.46595 * 299.99516 * 14 12 11 44 44 H 1.00899 * 110.99380 * 31.04862 * 15 12 11 45 45 H 1.08990 * 109.47747 * 300.00379 * 16 15 12 46 46 H 1.09007 * 109.46839 * 60.00419 * 16 15 12 47 47 H 0.96995 * 120.00151 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99890 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1847 -0.1152 2.4064 6 6 2.6490 -1.0714 3.2445 7 6 2.7538 -2.2441 2.4595 8 6 3.2227 -3.5683 2.9160 9 8 3.5667 -3.7264 4.0711 10 7 3.2693 -4.6014 2.0516 11 6 3.7350 -5.9146 2.5040 12 6 3.6906 -6.9018 1.3360 13 1 4.4020 -6.5915 0.5707 14 6 4.0571 -8.3005 1.8361 15 7 2.3369 -6.9249 0.7656 16 6 2.3651 -7.3512 -0.6398 17 6 0.9619 -7.3633 -1.1894 18 8 0.0301 -7.0472 -0.4800 19 7 0.7424 -7.7252 -2.4689 20 6 -0.5342 -7.7356 -2.9689 21 1 -1.3638 -7.4534 -2.3377 22 6 -0.7606 -8.1092 -4.2880 23 7 -1.9842 -8.1197 -4.7671 24 14 0.6742 -8.5980 -5.3797 25 1 0.9069 -10.0602 -5.2661 26 1 0.3624 -8.2544 -6.7904 27 1 1.8940 -7.8678 -4.9505 28 7 2.3503 -1.9308 1.2444 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.9853 0.9159 2.6584 37 1 2.8930 -0.9611 4.2908 38 1 2.9952 -4.4752 1.1297 39 1 4.7584 -5.8309 2.8699 40 1 3.0902 -6.2719 3.3070 41 1 3.3456 -8.6107 2.6013 42 1 4.0250 -9.0038 1.0040 43 1 5.0614 -8.2834 2.2593 44 1 1.8887 -6.0260 0.8619 45 1 2.9761 -6.6580 -1.2177 46 1 2.7899 -8.3529 -0.7072 47 1 1.4874 -7.9782 -3.0360 48 1 -2.1422 -8.3801 -5.6880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266975151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:57 Heat of formation + Delta-G solvation = -17.475424 kcal Electronic energy + Delta-G solvation = -28941.628071 eV Core-core repulsion = 24839.397818 eV Total energy + Delta-G solvation = -4102.230253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70764 -40.77682 -40.24966 -38.23416 -36.76411 -36.03480 -35.03623 -33.75868 -32.30875 -31.91603 -31.21596 -28.31459 -28.26249 -27.54720 -25.60593 -24.74510 -23.38865 -21.72473 -21.43171 -21.30662 -20.86485 -20.30997 -18.97235 -17.99602 -17.64204 -17.19791 -17.09743 -16.94389 -16.72386 -16.41057 -15.80642 -15.54662 -15.45042 -15.16024 -14.90253 -14.73162 -14.46636 -14.25541 -14.05899 -13.93084 -13.64696 -13.57385 -13.34805 -13.29555 -13.10067 -12.97683 -12.82709 -12.56833 -12.41819 -12.39442 -12.18216 -11.97836 -11.94846 -11.87111 -11.52119 -11.34994 -10.45288 -10.40295 -10.25519 -10.18826 -10.00625 -9.40398 -8.41710 -6.02809 0.48743 1.17927 1.29882 1.35861 1.44455 1.45783 1.94420 2.08019 2.22834 2.32460 2.68088 3.14393 3.27037 3.34337 3.64434 3.72005 3.83295 3.90526 4.02116 4.09504 4.16080 4.21176 4.33955 4.40853 4.53863 4.60307 4.60708 4.62685 4.69896 4.74711 4.78254 4.83232 4.84979 4.94630 5.05363 5.13224 5.19763 5.22462 5.35526 5.46534 5.52459 5.87944 5.88904 6.02012 6.26545 6.27760 6.59047 6.85635 6.87411 7.07311 7.38789 7.95809 8.76019 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008653 B = 0.003046 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.248246 B = 9191.282812 C =11764.140512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 C -0.156 4.156 4 N -0.271 5.271 5 C 0.001 3.999 6 C -0.200 4.200 7 C -0.051 4.051 8 C 0.604 3.396 9 O -0.567 6.567 10 N -0.714 5.714 11 C 0.120 3.880 12 C 0.078 3.922 13 H 0.072 0.928 14 C -0.136 4.136 15 N -0.684 5.684 16 C 0.060 3.940 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.589 5.589 20 C -0.329 4.329 21 H 0.053 0.947 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.275 1.275 27 H -0.230 1.230 28 N -0.282 5.282 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.037 0.963 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.223 0.777 37 H 0.167 0.833 38 H 0.406 0.594 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.340 0.660 45 H 0.080 0.920 46 H 0.119 0.881 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.603 17.996 7.943 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 C -0.213 4.213 4 N -0.060 5.060 5 C -0.142 4.142 6 C -0.228 4.228 7 C -0.209 4.209 8 C 0.390 3.610 9 O -0.444 6.444 10 N -0.366 5.366 11 C -0.003 4.003 12 C -0.031 4.031 13 H 0.090 0.910 14 C -0.194 4.194 15 N -0.319 5.319 16 C -0.072 4.072 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.231 5.231 20 C -0.459 4.459 21 H 0.071 0.929 22 C -0.213 4.213 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.153 1.153 28 N -0.119 5.119 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.239 0.761 37 H 0.185 0.815 38 H 0.242 0.758 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.160 0.840 45 H 0.097 0.903 46 H 0.137 0.863 47 H 0.226 0.774 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.741 17.012 8.142 25.218 hybrid contribution 0.047 0.532 -0.815 0.974 sum 16.788 17.544 7.328 25.364 Atomic orbital electron populations 1.22237 0.92424 1.02449 1.05087 1.21977 0.95895 0.94854 0.84105 1.22196 1.02193 0.91128 1.05828 1.46187 1.43778 1.05129 1.10915 1.23346 1.04434 1.02106 0.84323 1.22001 1.07854 0.91007 1.01949 1.21924 1.10460 0.96367 0.92180 1.17105 0.76741 0.82603 0.84559 1.90743 1.50682 1.84251 1.18746 1.45900 1.66434 1.10174 1.14050 1.21697 1.00998 0.80394 0.97231 1.21896 0.88973 0.96790 0.95439 0.91000 1.21750 1.01864 0.93983 1.01798 1.60163 1.19258 1.36169 1.16346 1.21732 0.91914 1.04179 0.89354 1.20983 0.92242 0.81451 0.81799 1.90560 1.46922 1.53287 1.59181 1.42002 1.07598 1.62168 1.11308 1.19000 0.84814 1.45251 0.96805 0.92875 1.26126 1.00590 0.96583 0.98019 1.69809 1.22473 1.48174 1.17037 0.85356 0.78389 0.79929 0.77784 1.18198 1.19967 1.15333 1.73474 1.16532 0.99685 1.22238 0.90625 0.87711 0.94329 0.87824 0.91539 0.87610 0.89619 0.76078 0.81499 0.75765 0.89005 0.91693 0.92839 0.91705 0.89811 0.84002 0.90269 0.86350 0.77418 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.52 71.98 0.69 -1.49 16 2 C 0.13 1.72 3.80 44.99 0.17 1.89 16 3 C -0.16 -0.86 8.80 71.98 0.63 -0.23 16 4 N -0.27 -5.29 3.22 -327.37 -1.05 -6.34 16 5 C 0.00 0.01 10.54 83.54 0.88 0.89 16 6 C -0.20 -4.49 10.81 22.41 0.24 -4.25 16 7 C -0.05 -1.43 7.13 42.46 0.30 -1.12 16 8 C 0.60 18.45 7.82 86.74 0.68 19.13 16 9 O -0.57 -19.94 16.93 -3.92 -0.07 -20.00 16 10 N -0.71 -18.93 4.99 -466.10 -2.32 -21.25 16 11 C 0.12 2.81 5.31 86.38 0.46 3.27 16 12 C 0.08 1.68 2.81 44.91 0.13 1.81 16 13 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 14 C -0.14 -2.53 9.42 71.98 0.68 -1.85 16 15 N -0.68 -20.69 5.93 -495.57 -2.94 -23.63 16 16 C 0.06 1.84 5.96 85.56 0.51 2.35 16 17 C 0.45 20.39 7.82 87.66 0.69 21.08 16 18 O -0.62 -34.88 15.78 -3.09 -0.05 -34.93 16 19 N -0.59 -27.78 5.09 -306.98 -1.56 -29.35 16 20 C -0.33 -19.40 10.16 84.04 0.85 -18.55 16 21 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.93 -56.34 13.96 21.67 0.30 -56.04 16 24 Si 0.97 38.44 27.74 68.60 1.90 40.34 16 25 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.23 -7.62 6.52 99.48 0.65 -6.98 16 28 N -0.28 -7.52 11.67 -48.18 -0.56 -8.08 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.08 0.22 7.05 -2.38 -0.02 0.21 16 36 H 0.22 1.41 7.16 -2.91 -0.02 1.39 16 37 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.41 10.58 7.10 -92.71 -0.66 9.93 16 39 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.18 7.45 -2.39 -0.02 1.16 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.34 11.49 6.41 -89.69 -0.58 10.92 16 45 H 0.08 1.93 8.05 -2.39 -0.02 1.91 16 46 H 0.12 2.99 7.44 -2.38 -0.02 2.97 16 47 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 48 H 0.28 15.35 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -86.68 400.83 0.20 -86.48 By element: Atomic # 1 Polarization: 51.06 SS G_CDS: -0.83 Total: 50.23 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 7.37 Total: 22.57 kcal Atomic # 7 Polarization: -136.55 SS G_CDS: -8.14 Total: -144.69 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.12 Total: -54.94 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.90 Total: 40.34 kcal Total: -86.68 0.20 -86.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266975151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.004 kcal (2) G-P(sol) polarization free energy of solvation -86.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds