Wall clock time and date at job start Tue Mar 31 2020 20:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 C 1.35031 * 124.88492 * 274.72258 * 4 2 1 6 6 C 1.35360 * 107.22839 * 179.89466 * 5 4 2 7 7 C 1.41497 * 105.50676 * 0.34486 * 6 5 4 8 8 C 1.47711 * 126.52320 * 179.79530 * 7 6 5 9 9 O 1.21574 * 119.99785 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00030 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99986 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47040 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47084 * 294.99886 * 12 11 10 14 14 C 1.53002 * 109.46761 * 174.99906 * 12 11 10 15 15 N 1.46903 * 109.47284 * 55.00355 * 12 11 10 16 16 C 1.46896 * 111.00118 * 204.99881 * 15 12 11 17 17 C 1.50697 * 109.47010 * 179.97438 * 16 15 12 18 18 O 1.21283 * 120.00318 * 359.97438 * 17 16 15 19 19 N 1.34786 * 119.99655 * 179.97438 * 17 16 15 20 20 C 1.37092 * 119.99719 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00286 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99843 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99982 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99841 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47117 * 60.00448 * 24 22 20 26 26 H 1.48501 * 109.46955 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47310 * 300.00297 * 24 22 20 28 28 N 1.28470 * 124.88188 * 95.01962 * 4 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.08006 * 126.38631 * 0.03191 * 5 4 2 37 37 H 1.08003 * 127.24528 * 180.13096 * 6 5 4 38 38 H 0.97001 * 120.00636 * 0.02562 * 10 8 7 39 39 H 1.08995 * 109.46953 * 300.00505 * 11 10 8 40 40 H 1.08997 * 109.46931 * 60.00187 * 11 10 8 41 41 H 1.09007 * 109.47026 * 60.00169 * 14 12 11 42 42 H 1.09004 * 109.46943 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.47646 * 300.00175 * 14 12 11 44 44 H 1.00903 * 110.99216 * 328.95376 * 15 12 11 45 45 H 1.09006 * 109.46647 * 299.99585 * 16 15 12 46 46 H 1.08998 * 109.47238 * 59.99418 * 16 15 12 47 47 H 0.97002 * 119.99990 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99718 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1898 -0.1139 2.4050 6 6 2.6494 -1.0713 3.2444 7 6 2.7479 -2.2456 2.4612 8 6 3.2084 -3.5721 2.9197 9 8 3.5494 -3.7309 4.0758 10 7 3.2506 -4.6062 2.0565 11 6 3.7068 -5.9220 2.5115 12 6 3.6590 -6.9100 1.3442 13 1 2.6244 -7.0552 1.0333 14 6 4.2517 -8.2497 1.7856 15 7 4.4384 -6.3767 0.2190 16 6 3.9690 -6.9329 -1.0570 17 6 4.7898 -6.3636 -2.1854 18 8 5.6780 -5.5720 -1.9499 19 7 4.5368 -6.7341 -3.4564 20 6 5.2831 -6.2158 -4.4829 21 1 6.0741 -5.5110 -4.2732 22 6 5.0226 -6.5982 -5.7931 23 7 4.0606 -7.4562 -6.0482 24 14 6.0401 -5.8925 -7.1918 25 1 7.4685 -6.2460 -6.9922 26 1 5.5660 -6.4553 -8.4817 27 1 5.8942 -4.4148 -7.2135 28 7 2.3502 -1.9308 1.2445 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9944 0.9182 2.6560 37 1 2.8933 -0.9610 4.2907 38 1 2.9789 -4.4794 1.1340 39 1 4.7297 -5.8445 2.8798 40 1 3.0578 -6.2744 3.3131 41 1 3.6734 -8.6455 2.6205 42 1 4.2172 -8.9538 0.9541 43 1 5.2863 -8.1046 2.0966 44 1 4.4107 -5.3681 0.2059 45 1 4.0751 -8.0177 -1.0414 46 1 2.9207 -6.6724 -1.2033 47 1 3.8266 -7.3675 -3.6447 48 1 3.8785 -7.7228 -6.9630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266975152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:01 Heat of formation + Delta-G solvation = 4.936293 kcal Electronic energy + Delta-G solvation = -28862.196447 eV Core-core repulsion = 24760.938039 eV Total energy + Delta-G solvation = -4101.258408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.86470 -39.58594 -38.35407 -36.90616 -36.12566 -34.09258 -33.67312 -31.35225 -31.10479 -30.99879 -30.30146 -27.84841 -26.84416 -26.18216 -24.18175 -23.74684 -22.55062 -20.69989 -20.48745 -19.98301 -19.27613 -18.11431 -17.84887 -17.04344 -16.31766 -16.21346 -15.89746 -15.51097 -15.27647 -14.87084 -14.59495 -14.41886 -14.17246 -13.99237 -13.85303 -13.42019 -13.38599 -13.30034 -12.83088 -12.74279 -12.66693 -12.51411 -12.44601 -11.88797 -11.85757 -11.70080 -11.66045 -11.62271 -11.39081 -11.07254 -11.03013 -10.80487 -10.44544 -10.21105 -10.18531 -9.49783 -9.44635 -9.26401 -9.05174 -8.44714 -8.08779 -7.95558 -6.41462 -3.82131 1.49013 1.98953 2.17780 3.11196 3.19684 3.25219 3.29794 3.40299 3.91520 3.97381 4.07748 4.30173 4.32704 4.49160 4.53159 4.54848 4.72160 4.94641 4.97851 5.03238 5.13961 5.20592 5.24308 5.27241 5.31253 5.34617 5.44203 5.56473 5.58115 5.61782 5.62469 5.73451 5.81007 5.82485 5.99399 6.03603 6.21370 6.23765 6.31012 6.42589 6.58971 7.20448 7.36725 7.55205 7.62709 7.78712 8.06504 8.16890 8.62028 9.18268 9.54817 10.06700 10.76280 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.002987 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.839325 B = 9371.768916 C =12135.468422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 C -0.164 4.164 4 N -0.273 5.273 5 C -0.020 4.020 6 C -0.179 4.179 7 C -0.022 4.022 8 C 0.609 3.391 9 O -0.536 6.536 10 N -0.719 5.719 11 C 0.118 3.882 12 C 0.071 3.929 13 H 0.049 0.951 14 C -0.137 4.137 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.581 6.581 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 N -0.255 5.255 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.405 0.595 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.349 0.651 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 12.482 14.603 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 C -0.222 4.222 4 N -0.062 5.062 5 C -0.162 4.162 6 C -0.207 4.207 7 C -0.181 4.181 8 C 0.393 3.607 9 O -0.411 6.411 10 N -0.371 5.371 11 C -0.005 4.005 12 C -0.039 4.039 13 H 0.067 0.933 14 C -0.196 4.196 15 N -0.300 5.300 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.465 6.465 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.091 5.091 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.196 0.804 37 H 0.179 0.821 38 H 0.241 0.759 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.170 0.830 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.618 11.960 14.302 20.978 hybrid contribution -0.861 0.807 -0.796 1.424 sum -10.479 12.767 13.506 21.336 Atomic orbital electron populations 1.22223 0.92749 1.03777 1.03481 1.21662 0.95576 0.93486 0.85542 1.22196 1.02743 0.93348 1.03952 1.45774 1.44923 1.05875 1.09643 1.22748 1.07077 1.00807 0.85591 1.21737 1.06724 0.91001 1.01260 1.21894 1.09041 0.96160 0.91053 1.16835 0.77139 0.81820 0.84869 1.90781 1.48950 1.83628 1.17715 1.45895 1.67118 1.09963 1.14158 1.21651 1.01236 0.81010 0.96630 1.21812 0.95938 0.95285 0.90888 0.93320 1.21735 1.01714 0.95176 1.00943 1.60144 1.55771 1.13166 1.00873 1.21753 0.96451 1.00677 0.89455 1.19802 0.87530 0.86390 0.83652 1.90531 1.34482 1.37892 1.83627 1.41849 1.32772 1.40833 1.04602 1.19653 1.14438 1.23914 0.84876 0.88011 1.25248 0.97213 0.96799 0.98643 1.69605 1.30592 1.32740 1.21452 0.85929 0.79808 0.79071 0.79472 1.19865 1.20981 1.19966 1.73549 1.15622 0.98065 1.21866 0.89863 0.91677 0.91289 0.86848 0.91305 0.91072 0.89476 0.80372 0.82139 0.75864 0.90092 0.90613 0.92475 0.91996 0.91476 0.82986 0.89394 0.93862 0.77478 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.52 37.16 0.35 -0.61 16 2 C 0.14 1.00 3.80 -67.93 -0.26 0.75 16 3 C -0.16 -0.80 8.80 37.15 0.33 -0.47 16 4 N -0.27 -2.82 3.22 -54.83 -0.18 -2.99 16 5 C -0.02 -0.18 10.54 -17.17 -0.18 -0.36 16 6 C -0.18 -2.06 10.81 -39.37 -0.43 -2.49 16 7 C -0.02 -0.30 7.13 -82.76 -0.59 -0.89 16 8 C 0.61 9.20 7.82 -12.39 -0.10 9.10 16 9 O -0.54 -9.28 16.93 5.30 0.09 -9.19 16 10 N -0.72 -9.77 4.99 -61.29 -0.31 -10.08 16 11 C 0.12 1.49 5.31 -4.04 -0.02 1.47 16 12 C 0.07 0.90 2.81 -67.71 -0.19 0.71 16 13 H 0.05 0.57 7.80 -51.93 -0.41 0.17 16 14 C -0.14 -1.56 9.41 37.16 0.35 -1.21 16 15 N -0.66 -10.94 5.93 -107.99 -0.64 -11.58 16 16 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 17 C 0.44 10.48 7.82 -10.98 -0.09 10.40 16 18 O -0.58 -15.99 15.78 5.56 0.09 -15.91 16 19 N -0.56 -14.31 5.29 -10.97 -0.06 -14.37 16 20 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 N -0.26 -3.40 11.67 33.42 0.39 -3.01 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.24 7.05 -51.93 -0.37 -0.12 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.18 0.92 7.16 -52.48 -0.38 0.55 16 37 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.41 5.46 7.10 -40.82 -0.29 5.17 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.35 6.10 6.41 -39.29 -0.25 5.85 16 45 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 46 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 403.93 15.07 6.09 6.09 Total: -1.00 -34.83 403.93 -7.28 -42.11 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -7.36 Total: 17.46 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.09 Total: 9.22 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.07 Total: -65.82 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.18 Total: -25.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.83 -7.28 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266975152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.048 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds