Wall clock time and date at job start Tue Mar 31 2020 20:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 C 1.35031 * 124.88492 * 274.72258 * 4 2 1 6 6 C 1.35360 * 107.22839 * 179.89466 * 5 4 2 7 7 C 1.41497 * 105.50676 * 0.34486 * 6 5 4 8 8 C 1.47711 * 126.52320 * 179.79530 * 7 6 5 9 9 O 1.21574 * 119.99785 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00030 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99986 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47040 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.47084 * 294.99886 * 12 11 10 14 14 C 1.53002 * 109.46761 * 174.99906 * 12 11 10 15 15 N 1.46903 * 109.47284 * 55.00355 * 12 11 10 16 16 C 1.46896 * 111.00118 * 204.99881 * 15 12 11 17 17 C 1.50697 * 109.47010 * 179.97438 * 16 15 12 18 18 O 1.21283 * 120.00318 * 359.97438 * 17 16 15 19 19 N 1.34786 * 119.99655 * 179.97438 * 17 16 15 20 20 C 1.37092 * 119.99719 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00286 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99843 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99982 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99841 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47117 * 60.00448 * 24 22 20 26 26 H 1.48501 * 109.46955 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47310 * 300.00297 * 24 22 20 28 28 N 1.28470 * 124.88188 * 95.01962 * 4 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.08006 * 126.38631 * 0.03191 * 5 4 2 37 37 H 1.08003 * 127.24528 * 180.13096 * 6 5 4 38 38 H 0.97001 * 120.00636 * 0.02562 * 10 8 7 39 39 H 1.08995 * 109.46953 * 300.00505 * 11 10 8 40 40 H 1.08997 * 109.46931 * 60.00187 * 11 10 8 41 41 H 1.09007 * 109.47026 * 60.00169 * 14 12 11 42 42 H 1.09004 * 109.46943 * 179.97438 * 14 12 11 43 43 H 1.09001 * 109.47646 * 300.00175 * 14 12 11 44 44 H 1.00903 * 110.99216 * 328.95376 * 15 12 11 45 45 H 1.09006 * 109.46647 * 299.99585 * 16 15 12 46 46 H 1.08998 * 109.47238 * 59.99418 * 16 15 12 47 47 H 0.97002 * 119.99990 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99718 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1898 -0.1139 2.4050 6 6 2.6494 -1.0713 3.2444 7 6 2.7479 -2.2456 2.4612 8 6 3.2084 -3.5721 2.9197 9 8 3.5494 -3.7309 4.0758 10 7 3.2506 -4.6062 2.0565 11 6 3.7068 -5.9220 2.5115 12 6 3.6590 -6.9100 1.3442 13 1 2.6244 -7.0552 1.0333 14 6 4.2517 -8.2497 1.7856 15 7 4.4384 -6.3767 0.2190 16 6 3.9690 -6.9329 -1.0570 17 6 4.7898 -6.3636 -2.1854 18 8 5.6780 -5.5720 -1.9499 19 7 4.5368 -6.7341 -3.4564 20 6 5.2831 -6.2158 -4.4829 21 1 6.0741 -5.5110 -4.2732 22 6 5.0226 -6.5982 -5.7931 23 7 4.0606 -7.4562 -6.0482 24 14 6.0401 -5.8925 -7.1918 25 1 7.4685 -6.2460 -6.9922 26 1 5.5660 -6.4553 -8.4817 27 1 5.8942 -4.4148 -7.2135 28 7 2.3502 -1.9308 1.2445 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9944 0.9182 2.6560 37 1 2.8933 -0.9610 4.2907 38 1 2.9789 -4.4794 1.1340 39 1 4.7297 -5.8445 2.8798 40 1 3.0578 -6.2744 3.3131 41 1 3.6734 -8.6455 2.6205 42 1 4.2172 -8.9538 0.9541 43 1 5.2863 -8.1046 2.0966 44 1 4.4107 -5.3681 0.2059 45 1 4.0751 -8.0177 -1.0414 46 1 2.9207 -6.6724 -1.2033 47 1 3.8266 -7.3675 -3.6447 48 1 3.8785 -7.7228 -6.9630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266975152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:00 Heat of formation + Delta-G solvation = -22.077085 kcal Electronic energy + Delta-G solvation = -28863.367835 eV Core-core repulsion = 24760.938039 eV Total energy + Delta-G solvation = -4102.429796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.70647 -40.75648 -40.12786 -38.21054 -36.76006 -35.99453 -35.02054 -33.29360 -32.26021 -31.91507 -31.20681 -28.28458 -28.16801 -27.53606 -25.78920 -24.76079 -23.38561 -21.73477 -21.42537 -21.14310 -20.83689 -19.93248 -18.98114 -18.00784 -17.65360 -17.22229 -17.02487 -16.83405 -16.70310 -16.34922 -15.87584 -15.60961 -15.42116 -15.32098 -14.92347 -14.72822 -14.34575 -14.07027 -13.94715 -13.72016 -13.56631 -13.48325 -13.29870 -13.28338 -13.09329 -12.94196 -12.81462 -12.58423 -12.43400 -12.39441 -12.17367 -12.12776 -11.94798 -11.87536 -11.51213 -11.34904 -10.40495 -10.35771 -10.18819 -10.02420 -10.00380 -9.40372 -8.47140 -5.95929 0.48971 1.18471 1.38905 1.40961 1.45871 1.51870 2.03846 2.08268 2.28400 2.32529 2.85849 3.19971 3.27800 3.46291 3.64123 3.72180 3.84301 3.90630 4.02892 4.14489 4.20415 4.24407 4.37432 4.43968 4.57359 4.60411 4.61508 4.63053 4.71166 4.74880 4.77689 4.82520 4.85713 4.93772 5.04336 5.13431 5.19325 5.21704 5.35475 5.39975 5.45151 5.86519 5.88543 6.07661 6.26989 6.29141 6.59601 6.85648 7.07303 7.11907 7.55187 8.11006 8.70021 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.002987 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.839325 B = 9371.768916 C =12135.468422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 C -0.159 4.159 4 N -0.270 5.270 5 C 0.001 3.999 6 C -0.199 4.199 7 C -0.051 4.051 8 C 0.604 3.396 9 O -0.566 6.566 10 N -0.714 5.714 11 C 0.121 3.879 12 C 0.077 3.923 13 H 0.067 0.933 14 C -0.135 4.135 15 N -0.680 5.680 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.571 5.571 20 C -0.336 4.336 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.271 1.271 28 N -0.283 5.283 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.223 0.777 37 H 0.168 0.832 38 H 0.406 0.594 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.340 0.660 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.140 13.483 14.395 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 C -0.216 4.216 4 N -0.060 5.060 5 C -0.142 4.142 6 C -0.227 4.227 7 C -0.209 4.209 8 C 0.390 3.610 9 O -0.444 6.444 10 N -0.366 5.366 11 C -0.002 4.002 12 C -0.032 4.032 13 H 0.085 0.915 14 C -0.193 4.193 15 N -0.315 5.315 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.208 5.208 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.196 1.196 28 N -0.120 5.120 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.240 0.760 37 H 0.185 0.815 38 H 0.242 0.758 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.160 0.840 45 H 0.126 0.874 46 H 0.087 0.913 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.084 12.921 14.082 22.093 hybrid contribution -0.445 0.539 -0.733 1.013 sum -11.529 13.460 13.349 22.188 Atomic orbital electron populations 1.22198 0.91358 1.02892 1.05129 1.21993 0.96658 0.94527 0.83965 1.22210 1.01908 0.91582 1.05938 1.46187 1.43709 1.05158 1.10917 1.23347 1.04533 1.02028 0.84299 1.21995 1.07817 0.90903 1.02032 1.21917 1.10643 0.96353 0.92025 1.17110 0.76698 0.82580 0.84603 1.90744 1.50586 1.84260 1.18824 1.45910 1.66527 1.10168 1.13968 1.21680 1.00803 0.80656 0.97043 1.21891 0.96444 0.95555 0.89345 0.91523 1.21742 1.01476 0.94250 1.01854 1.60171 1.57265 1.12691 1.01328 1.21624 0.96318 1.01269 0.87623 1.20861 0.87112 0.85197 0.84392 1.90499 1.36491 1.39675 1.84379 1.41902 1.32843 1.41130 1.04950 1.19620 1.15305 1.25094 0.86489 0.90480 1.26018 0.98046 0.96728 1.00294 1.69663 1.31093 1.32891 1.22355 0.85014 0.78158 0.78482 0.76837 1.19860 1.19344 1.19619 1.73489 1.16752 0.99903 1.21868 0.87757 0.90450 0.93409 0.88462 0.89242 0.92335 0.87591 0.76029 0.81465 0.75818 0.91474 0.89020 0.89760 0.92112 0.92592 0.83996 0.87389 0.91342 0.76928 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.52 71.98 0.69 -0.88 16 2 C 0.13 1.71 3.80 44.99 0.17 1.89 16 3 C -0.16 -1.14 8.80 71.98 0.63 -0.51 16 4 N -0.27 -5.37 3.22 -327.39 -1.05 -6.43 16 5 C 0.00 0.01 10.54 83.54 0.88 0.89 16 6 C -0.20 -4.54 10.81 22.41 0.24 -4.29 16 7 C -0.05 -1.46 7.13 42.45 0.30 -1.16 16 8 C 0.60 18.92 7.82 86.75 0.68 19.60 16 9 O -0.57 -20.27 16.93 -3.95 -0.07 -20.34 16 10 N -0.71 -19.85 4.99 -466.10 -2.32 -22.17 16 11 C 0.12 3.02 5.31 86.38 0.46 3.48 16 12 C 0.08 1.84 2.81 44.91 0.13 1.97 16 13 H 0.07 1.41 7.80 -2.39 -0.02 1.39 16 14 C -0.13 -2.84 9.41 71.98 0.68 -2.16 16 15 N -0.68 -22.17 5.93 -495.58 -2.94 -25.11 16 16 C 0.06 2.20 5.97 85.56 0.51 2.71 16 17 C 0.44 21.09 7.82 87.65 0.69 21.77 16 18 O -0.62 -35.43 15.78 -3.04 -0.05 -35.48 16 19 N -0.57 -29.46 5.29 -306.99 -1.62 -31.08 16 20 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 23 N -0.92 -49.46 13.05 21.66 0.28 -49.18 16 24 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 N -0.28 -7.71 11.67 -48.17 -0.56 -8.27 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 0.29 7.05 -2.39 -0.02 0.27 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.22 1.44 7.16 -2.91 -0.02 1.42 16 37 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.41 11.23 7.10 -92.71 -0.66 10.57 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.06 1.30 7.45 -2.39 -0.02 1.28 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.34 12.11 6.41 -89.69 -0.58 11.53 16 45 H 0.11 3.33 7.44 -2.38 -0.02 3.31 16 46 H 0.07 2.05 8.06 -2.39 -0.02 2.03 16 47 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 48 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -77.96 403.93 0.06 -77.90 By element: Atomic # 1 Polarization: 51.38 SS G_CDS: -0.96 Total: 50.41 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 7.33 Total: 24.82 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -8.22 Total: -142.24 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -0.11 Total: -55.82 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -77.96 0.06 -77.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266975152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.821 kcal (2) G-P(sol) polarization free energy of solvation -77.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds