Wall clock time and date at job start Tue Mar 31 2020 20:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46851 * 2 1 4 4 N 1.28444 * 125.19326 * 85.73619 * 3 2 1 5 5 C 1.30866 * 110.92516 * 179.97438 * 4 3 2 6 6 C 1.50708 * 126.06492 * 179.97438 * 5 4 3 7 7 C 1.39672 * 107.86606 * 359.97438 * 5 4 3 8 8 C 1.36608 * 125.18815 * 265.70504 * 3 2 1 9 9 C 1.47164 * 126.88483 * 0.04711 * 8 3 2 10 10 O 1.21629 * 119.99879 * 5.54074 * 9 8 3 11 11 N 1.34767 * 119.99843 * 185.54546 * 9 8 3 12 12 C 1.46502 * 120.00030 * 185.12340 * 11 9 8 13 13 C 1.53000 * 109.47388 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.46903 * 65.00318 * 13 12 11 15 15 C 1.53003 * 109.47153 * 185.00230 * 13 12 11 16 16 N 1.46898 * 109.47233 * 305.00179 * 13 12 11 17 17 C 1.46898 * 111.00043 * 154.99746 * 16 13 12 18 18 C 1.50699 * 109.47038 * 180.02562 * 17 16 13 19 19 O 1.21292 * 120.00314 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00058 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00629 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99294 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00711 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00385 * 180.02562 * 23 21 20 25 25 Si 1.86811 * 119.99837 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47071 * 89.99638 * 25 23 21 27 27 H 1.48498 * 109.46985 * 210.00112 * 25 23 21 28 28 H 1.48501 * 109.46966 * 329.99880 * 25 23 21 29 29 H 1.08998 * 109.46911 * 300.00167 * 1 2 3 30 30 H 1.09003 * 109.46584 * 59.99998 * 1 2 3 31 31 H 1.08995 * 109.46679 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46911 * 239.99833 * 2 1 3 33 33 H 1.08998 * 109.46874 * 119.99604 * 2 1 3 34 34 H 1.09003 * 109.47011 * 90.02298 * 6 5 4 35 35 H 1.08999 * 109.46682 * 210.01799 * 6 5 4 36 36 H 1.09005 * 109.46886 * 330.01979 * 6 5 4 37 37 H 1.08000 * 127.31721 * 180.02562 * 7 5 4 38 38 H 0.96997 * 120.00536 * 5.12944 * 11 9 8 39 39 H 1.08993 * 109.47412 * 300.00342 * 12 11 9 40 40 H 1.09005 * 109.46605 * 59.99773 * 12 11 9 41 41 H 1.09005 * 109.47064 * 59.99929 * 15 13 12 42 42 H 1.08996 * 109.46926 * 180.02562 * 15 13 12 43 43 H 1.08997 * 109.47284 * 300.00180 * 15 13 12 44 44 H 1.00903 * 111.00088 * 278.95742 * 16 13 12 45 45 H 1.08997 * 109.47524 * 300.00129 * 17 16 13 46 46 H 1.09004 * 109.46804 * 60.00138 * 17 16 13 47 47 H 0.97002 * 120.00155 * 359.97438 * 20 18 17 48 48 H 0.96995 * 120.00035 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1915 2.1052 1.0468 5 6 2.6373 3.2928 0.7252 6 6 2.9562 4.4105 1.6845 7 6 2.7652 3.3406 -0.6649 8 6 2.3595 2.0956 -1.1133 9 6 2.3065 1.6339 -2.5096 10 8 1.8333 0.5447 -2.7725 11 7 2.7824 2.4179 -3.4971 12 6 2.6286 2.0091 -4.8955 13 6 3.2501 3.0685 -5.8079 14 1 4.3257 3.1099 -5.6363 15 6 2.9805 2.7046 -7.2693 16 7 2.6561 4.3790 -5.5120 17 6 3.5693 5.4673 -5.8857 18 6 2.9274 6.7931 -5.5676 19 8 1.8181 6.8281 -5.0783 20 7 3.5854 7.9402 -5.8279 21 6 3.0018 9.1464 -5.5381 22 1 2.0143 9.1774 -5.1016 23 6 3.6804 10.3289 -5.8059 24 7 3.1211 11.4850 -5.5276 25 14 5.3880 10.2752 -6.5616 26 1 5.2749 10.2955 -8.0421 27 1 6.1671 11.4553 -6.1083 28 1 6.0792 9.0321 -6.1349 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9993 4.3384 1.9925 35 1 2.7876 5.3693 1.1941 36 1 2.3123 4.3322 2.5605 37 1 3.1076 4.1723 -1.2627 38 1 3.2269 3.2528 -3.2820 39 1 3.1305 1.0544 -5.0523 40 1 1.5690 1.9052 -5.1292 41 1 1.9048 2.6630 -7.4409 42 1 3.4237 3.4590 -7.9193 43 1 3.4212 1.7321 -7.4889 44 1 1.7630 4.4829 -5.9700 45 1 4.4989 5.3704 -5.3249 46 1 3.7817 5.4129 -6.9535 47 1 4.4724 7.9123 -6.2196 48 1 3.5947 12.3105 -5.7149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266975836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:34 Heat of formation + Delta-G solvation = -23.935207 kcal Electronic energy + Delta-G solvation = -29067.135406 eV Core-core repulsion = 24964.625037 eV Total energy + Delta-G solvation = -4102.510370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.58477 -40.59900 -40.19153 -38.14974 -36.07828 -35.89283 -34.98971 -33.71082 -32.55276 -32.17828 -31.44583 -28.39007 -28.05474 -27.44068 -25.46701 -24.60694 -23.56205 -22.10100 -21.89774 -21.24660 -20.46912 -20.19403 -18.73422 -17.73083 -17.42738 -17.15516 -17.07134 -16.59288 -16.41501 -16.32411 -15.72947 -15.57549 -15.31085 -15.17775 -14.79412 -14.66294 -14.48671 -14.19600 -14.09475 -13.86776 -13.74165 -13.52448 -13.37076 -13.28084 -13.15235 -13.09952 -12.95995 -12.76572 -12.49955 -12.37609 -12.30258 -11.95658 -11.86821 -11.70492 -11.47121 -11.16207 -10.38596 -10.32421 -10.20776 -9.94557 -9.84260 -9.32123 -8.37762 -5.98417 0.19317 1.32792 1.36456 1.38403 1.47376 1.51971 2.01998 2.11198 2.24971 2.26113 2.74871 3.19472 3.40441 3.46187 3.59314 3.85970 3.96553 3.98826 4.08805 4.12793 4.24467 4.28267 4.35692 4.41825 4.50294 4.61624 4.63190 4.68263 4.68645 4.74557 4.78533 4.86996 4.92010 5.01837 5.03027 5.07625 5.12857 5.29231 5.40857 5.55847 5.56511 5.78050 5.94372 6.07470 6.37248 6.44393 6.63711 6.93086 7.01270 7.10119 7.45058 8.02453 8.80002 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.002695 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.472576 B =10385.999802 C =12140.893746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.108 3.892 3 N -0.262 5.262 4 N -0.295 5.295 5 C 0.011 3.989 6 C -0.066 4.066 7 C -0.186 4.186 8 C -0.052 4.052 9 C 0.588 3.412 10 O -0.572 6.572 11 N -0.687 5.687 12 C 0.136 3.864 13 C 0.077 3.923 14 H 0.106 0.894 15 C -0.177 4.177 16 N -0.679 5.679 17 C 0.062 3.938 18 C 0.449 3.551 19 O -0.614 6.614 20 N -0.592 5.592 21 C -0.325 4.325 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.965 3.035 26 H -0.259 1.259 27 H -0.279 1.279 28 H -0.227 1.227 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.173 0.827 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.346 0.654 45 H 0.119 0.881 46 H 0.079 0.921 47 H 0.390 0.610 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -23.654 3.859 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.010 4.010 3 N -0.050 5.050 4 N -0.129 5.129 5 C -0.145 4.145 6 C -0.124 4.124 7 C -0.215 4.215 8 C -0.180 4.180 9 C 0.374 3.626 10 O -0.453 6.453 11 N -0.338 5.338 12 C 0.012 3.988 13 C -0.033 4.033 14 H 0.124 0.876 15 C -0.236 4.236 16 N -0.311 5.311 17 C -0.070 4.070 18 C 0.237 3.763 19 O -0.498 6.498 20 N -0.234 5.234 21 C -0.455 4.455 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.578 5.578 25 Si 0.785 3.215 26 H -0.184 1.184 27 H -0.204 1.204 28 H -0.150 1.150 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.190 0.810 38 H 0.252 0.748 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.165 0.835 45 H 0.137 0.863 46 H 0.097 0.903 47 H 0.225 0.775 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.774 -24.997 5.536 26.246 hybrid contribution 0.568 1.675 -1.814 2.534 sum 6.342 -23.322 3.722 24.453 Atomic orbital electron populations 1.22026 0.92980 1.04605 1.01727 1.22354 0.96679 0.75715 1.06285 1.46018 1.44462 1.12911 1.01592 1.73072 1.20166 1.05431 1.14209 1.22542 1.03243 0.94166 0.94577 1.20196 1.02876 0.92909 0.96438 1.22449 1.06660 0.97036 0.95367 1.21547 1.11591 0.94752 0.90144 1.16954 0.78110 0.84109 0.83446 1.90730 1.48210 1.21956 1.84382 1.45495 1.57967 1.24495 1.05805 1.21502 1.01154 0.97553 0.78586 1.21879 1.00219 0.87341 0.93839 0.87552 1.22386 1.02503 1.03471 0.95223 1.60143 1.05977 1.00594 1.64437 1.21686 0.96802 0.87035 1.01465 1.21057 0.86756 0.86354 0.82137 1.90569 1.22733 1.87873 1.48601 1.42037 1.18057 1.05080 1.58231 1.18982 1.02359 0.83438 1.40688 0.92797 1.26123 1.04000 0.93677 0.97739 1.69812 1.40857 0.98503 1.48637 0.85371 0.76899 0.80079 0.79188 1.18374 1.20397 1.14993 0.92310 0.93859 0.87584 0.86977 0.86745 0.89393 0.89691 0.90681 0.80987 0.74751 0.89565 0.92484 0.92526 0.91550 0.89915 0.83502 0.86262 0.90333 0.77485 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.24 71.98 0.74 -2.11 16 2 C 0.11 2.16 6.58 86.38 0.57 2.73 16 3 N -0.26 -6.76 3.35 -334.67 -1.12 -7.89 16 4 N -0.29 -7.96 11.90 -47.49 -0.57 -8.52 16 5 C 0.01 0.27 7.22 43.05 0.31 0.58 16 6 C -0.07 -1.23 10.45 71.24 0.74 -0.48 16 7 C -0.19 -4.72 10.43 22.66 0.24 -4.48 16 8 C -0.05 -1.38 6.96 40.79 0.28 -1.10 16 9 C 0.59 15.41 7.78 86.59 0.67 16.09 16 10 O -0.57 -16.78 14.68 -4.12 -0.06 -16.84 16 11 N -0.69 -14.94 5.37 -466.64 -2.50 -17.45 16 12 C 0.14 2.48 5.38 86.38 0.46 2.94 16 13 C 0.08 1.19 2.75 44.92 0.12 1.31 16 14 H 0.11 1.28 7.80 -2.39 -0.02 1.26 16 15 C -0.18 -2.23 9.16 71.98 0.66 -1.57 16 16 N -0.68 -15.98 5.31 -495.59 -2.63 -18.61 16 17 C 0.06 1.56 5.97 85.56 0.51 2.07 16 18 C 0.45 18.50 7.82 87.66 0.69 19.19 16 19 O -0.61 -32.02 15.78 -3.07 -0.05 -32.07 16 20 N -0.59 -26.15 5.09 -306.99 -1.56 -27.71 16 21 C -0.33 -18.44 10.16 84.04 0.85 -17.59 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 23 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 24 N -0.94 -55.74 13.96 21.66 0.30 -55.44 16 25 Si 0.96 37.33 27.74 68.60 1.90 39.24 16 26 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 27 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 28 H -0.23 -7.16 6.52 99.48 0.65 -6.52 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 2.32 6.20 -2.39 -0.01 2.31 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.17 3.86 7.62 -2.91 -0.02 3.84 16 38 H 0.42 8.69 7.22 -92.71 -0.67 8.02 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 42 H 0.07 0.83 7.45 -2.39 -0.02 0.81 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.35 9.43 8.17 -89.69 -0.73 8.70 16 45 H 0.12 2.33 8.06 -2.39 -0.02 2.31 16 46 H 0.08 1.55 7.44 -2.38 -0.02 1.53 16 47 H 0.39 14.00 5.76 -92.71 -0.53 13.46 16 48 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -80.17 401.26 0.04 -80.13 By element: Atomic # 1 Polarization: 49.05 SS G_CDS: -0.99 Total: 48.06 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 7.32 Total: 17.09 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -8.08 Total: -135.61 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -0.11 Total: -48.91 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 1.90 Total: 39.24 kcal Total: -80.17 0.04 -80.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266975836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.196 kcal (2) G-P(sol) polarization free energy of solvation -80.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds