Wall clock time and date at job start Tue Mar 31 2020 20:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47043 * 2 1 4 4 N 1.28446 * 125.19136 * 274.19293 * 3 2 1 5 5 C 1.30868 * 110.92852 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.06902 * 180.02562 * 5 4 3 7 7 C 1.39671 * 107.86045 * 359.74083 * 5 4 3 8 8 C 1.36600 * 125.19021 * 94.21786 * 3 2 1 9 9 C 1.47161 * 126.88498 * 359.97438 * 8 3 2 10 10 O 1.21624 * 120.00103 * 354.72991 * 9 8 3 11 11 N 1.34780 * 119.99975 * 174.72537 * 9 8 3 12 12 C 1.46503 * 119.99668 * 185.11505 * 11 9 8 13 13 C 1.53001 * 109.46712 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.47082 * 294.99921 * 13 12 11 15 15 C 1.52998 * 109.47198 * 174.99966 * 13 12 11 16 16 N 1.46905 * 109.47288 * 54.99747 * 13 12 11 17 17 C 1.46901 * 110.99989 * 204.99705 * 16 13 12 18 18 C 1.50689 * 109.47062 * 180.02562 * 17 16 13 19 19 O 1.21292 * 120.00492 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99986 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00211 * 180.02562 * 20 18 17 22 22 H 1.08009 * 119.99657 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00198 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00133 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00134 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46878 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47327 * 119.99829 * 25 23 21 28 28 H 1.48504 * 109.47004 * 240.00096 * 25 23 21 29 29 H 1.09002 * 109.46747 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 299.99843 * 1 2 3 31 31 H 1.09002 * 109.47127 * 60.00331 * 1 2 3 32 32 H 1.09000 * 109.47187 * 240.00157 * 2 1 3 33 33 H 1.08993 * 109.47289 * 119.99827 * 2 1 3 34 34 H 1.09001 * 109.47238 * 89.97060 * 6 5 4 35 35 H 1.08994 * 109.47032 * 209.97749 * 6 5 4 36 36 H 1.09005 * 109.47086 * 329.97456 * 6 5 4 37 37 H 1.07998 * 127.32114 * 180.30690 * 7 5 4 38 38 H 0.96998 * 120.00101 * 5.11826 * 11 9 8 39 39 H 1.09005 * 109.47010 * 299.99817 * 12 11 9 40 40 H 1.08995 * 109.46896 * 60.00155 * 12 11 9 41 41 H 1.09000 * 109.47067 * 299.99964 * 15 13 12 42 42 H 1.09001 * 109.46972 * 59.99676 * 15 13 12 43 43 H 1.08990 * 109.47337 * 179.97438 * 15 13 12 44 44 H 1.00897 * 110.99434 * 81.04970 * 16 13 12 45 45 H 1.08998 * 109.47368 * 300.00334 * 17 16 13 46 46 H 1.09004 * 109.46710 * 60.00285 * 17 16 13 47 47 H 0.96996 * 120.00409 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00117 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1927 2.1047 -1.0469 5 6 2.6382 3.2925 -0.7254 6 6 2.9582 4.4097 -1.6847 7 6 2.7582 3.3430 0.6652 8 6 2.3581 2.0960 1.1133 9 6 2.3037 1.6349 2.5098 10 8 1.8350 0.5436 2.7720 11 7 2.7734 2.4217 3.4981 12 6 2.8229 1.9194 4.8734 13 6 3.3919 3.0027 5.7918 14 1 4.4285 3.2018 5.5201 15 6 3.3280 2.5254 7.2441 16 7 2.6024 4.2330 5.6455 17 6 3.3983 5.4148 6.0030 18 6 2.5570 6.6545 5.8416 19 8 1.4073 6.5627 5.4662 20 7 3.0821 7.8655 6.1143 21 6 2.3165 8.9934 5.9679 22 1 1.2927 8.9115 5.6337 23 6 2.8576 10.2417 6.2496 24 7 4.1031 10.3413 6.6568 25 14 1.8147 11.7786 6.0495 26 1 0.4576 11.3983 5.5816 27 1 1.7105 12.4795 7.3546 28 1 2.4471 12.6796 5.0528 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0690 5.0206 -1.8406 35 1 3.7553 5.0270 -1.2706 36 1 3.2817 3.9894 -2.6371 37 1 3.0935 4.1772 1.2636 38 1 3.0787 3.3206 3.2988 39 1 1.8167 1.6574 5.2009 40 1 3.4600 1.0360 4.9148 41 1 2.2913 2.3263 7.5158 42 1 3.9137 1.6126 7.3526 43 1 3.7337 3.2969 7.8983 44 1 1.7568 4.1872 6.1940 45 1 3.7273 5.3317 7.0388 46 1 4.2684 5.4781 5.3494 47 1 4.0016 7.9391 6.4141 48 1 4.4810 11.2129 6.8531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266975837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:37 Heat of formation + Delta-G solvation = -4.085971 kcal Electronic energy + Delta-G solvation = -28972.224956 eV Core-core repulsion = 24870.575313 eV Total energy + Delta-G solvation = -4101.649642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62598 -39.51992 -38.44215 -36.97315 -35.11926 -34.15130 -33.77802 -31.60426 -31.36801 -31.16058 -30.39804 -27.56262 -26.69570 -26.24761 -24.05021 -23.68951 -22.65361 -21.20292 -20.92558 -19.52416 -19.25586 -17.97285 -17.75857 -16.43636 -16.33866 -16.08142 -15.86664 -15.35554 -15.08973 -14.75609 -14.62833 -14.44673 -14.24720 -13.88755 -13.78380 -13.39089 -13.33181 -13.17557 -12.94043 -12.70013 -12.60524 -12.48087 -12.37253 -12.22841 -12.16741 -11.76331 -11.61899 -11.49162 -11.45432 -11.09764 -11.05344 -10.73999 -10.36835 -10.25790 -10.11004 -9.55582 -9.30388 -8.97574 -8.91653 -8.55251 -8.16939 -8.00133 -6.45493 -3.86317 1.20233 2.26363 2.48294 3.13936 3.15326 3.17425 3.25119 3.32193 3.85862 4.00682 4.24765 4.32146 4.52578 4.69889 4.77137 4.80054 4.90584 4.99926 5.05637 5.06778 5.15820 5.22794 5.31637 5.39961 5.41940 5.51272 5.55578 5.57832 5.59920 5.62427 5.68312 5.79750 5.82453 5.86692 5.92408 5.94524 5.99227 6.21187 6.34758 6.46428 6.69085 7.07614 7.44076 7.52099 7.52968 7.99168 8.02569 8.10474 8.56888 9.14453 9.50160 10.01193 10.72193 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.002614 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.783894 B =10710.659940 C =12546.439352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.257 5.257 4 N -0.279 5.279 5 C 0.022 3.978 6 C -0.067 4.067 7 C -0.180 4.180 8 C -0.036 4.036 9 C 0.590 3.410 10 O -0.552 6.552 11 N -0.694 5.694 12 C 0.136 3.864 13 C 0.067 3.933 14 H 0.085 0.915 15 C -0.181 4.181 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.163 0.837 38 H 0.414 0.586 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.354 0.646 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 -18.301 -8.267 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.044 5.044 4 N -0.113 5.113 5 C -0.135 4.135 6 C -0.125 4.125 7 C -0.209 4.209 8 C -0.164 4.164 9 C 0.376 3.624 10 O -0.431 6.431 11 N -0.345 5.345 12 C 0.012 3.988 13 C -0.044 4.044 14 H 0.104 0.896 15 C -0.240 4.240 16 N -0.297 5.297 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.180 0.820 38 H 0.251 0.749 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.174 0.826 45 H 0.063 0.937 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.112 -19.718 -9.838 22.064 hybrid contribution 0.528 1.769 1.789 2.571 sum 1.641 -17.948 -8.049 19.739 Atomic orbital electron populations 1.22074 0.93515 1.03319 1.03211 1.22154 0.96260 0.76627 1.05533 1.45722 1.44648 1.12235 1.01834 1.73088 1.19472 1.04961 1.13771 1.22014 1.03760 0.93747 0.93936 1.20094 1.02211 0.93529 0.96698 1.22227 1.06902 0.96779 0.95039 1.21374 1.10971 0.94175 0.89865 1.16885 0.78028 0.84373 0.83152 1.90747 1.46396 1.21874 1.84096 1.45478 1.63876 1.18158 1.06972 1.21394 1.01818 0.95599 0.80014 1.21860 0.98270 0.90444 0.93797 0.89638 1.22429 1.02774 1.02077 0.96717 1.60184 1.07661 0.99758 1.62077 1.21724 0.96673 0.90454 0.99477 1.19791 0.88581 0.84304 0.84871 1.90542 1.18470 1.86270 1.51333 1.41873 1.14525 1.04826 1.58760 1.19745 0.97442 0.83378 1.42245 0.87874 1.25258 0.96241 0.99354 0.97060 1.69613 1.13247 1.25697 1.45724 0.85815 0.79907 0.80864 0.77863 1.19192 1.20778 1.20702 0.90240 0.91505 0.91892 0.88771 0.86554 0.90748 0.90359 0.91196 0.81962 0.74942 0.91143 0.91125 0.91922 0.91824 0.91829 0.82575 0.93665 0.89584 0.77495 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.11 1.17 6.58 -4.04 -0.03 1.14 16 3 N -0.26 -3.34 3.35 -57.14 -0.19 -3.53 16 4 N -0.28 -3.78 11.90 33.64 0.40 -3.38 16 5 C 0.02 0.27 7.22 -82.47 -0.60 -0.32 16 6 C -0.07 -0.63 10.45 36.01 0.38 -0.25 16 7 C -0.18 -2.29 10.44 -38.98 -0.41 -2.69 16 8 C -0.04 -0.48 6.96 -82.06 -0.57 -1.05 16 9 C 0.59 8.03 7.78 -12.64 -0.10 7.93 16 10 O -0.55 -8.37 14.68 5.26 0.08 -8.29 16 11 N -0.69 -8.30 5.38 -61.47 -0.33 -8.63 16 12 C 0.14 1.45 5.38 -4.04 -0.02 1.43 16 13 C 0.07 0.68 2.75 -67.71 -0.19 0.50 16 14 H 0.09 0.80 7.80 -51.93 -0.40 0.40 16 15 C -0.18 -1.59 9.16 37.16 0.34 -1.25 16 16 N -0.66 -9.16 5.32 -107.99 -0.57 -9.74 16 17 C 0.05 0.77 5.96 -4.98 -0.03 0.74 16 18 C 0.44 9.71 7.82 -10.99 -0.09 9.62 16 19 O -0.58 -15.07 15.78 5.55 0.09 -14.98 16 20 N -0.56 -13.64 5.29 -10.97 -0.06 -13.70 16 21 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 22 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 25 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 1.24 6.19 -51.93 -0.32 0.92 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.16 1.80 7.59 -52.49 -0.40 1.40 16 38 H 0.41 4.87 7.17 -40.82 -0.29 4.58 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 44 H 0.35 5.34 8.17 -39.29 -0.32 5.02 16 45 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 46 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 47 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 48 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -32.79 404.31 -7.37 -40.16 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -7.41 Total: 16.71 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.17 Total: 6.88 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.03 Total: -62.21 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.16 Total: -23.27 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.79 -7.37 -40.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266975837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.077 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds