Wall clock time and date at job start Tue Mar 31 2020 20:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46974 * 2 1 4 4 N 1.39939 * 125.75515 * 269.97392 * 3 2 1 5 5 C 1.30450 * 108.89327 * 179.77764 * 4 3 2 6 6 C 1.41284 * 108.02508 * 0.38587 * 5 4 3 7 7 C 1.47431 * 126.41495 * 179.87960 * 6 5 4 8 8 O 1.21602 * 120.00114 * 179.68473 * 7 6 5 9 9 N 1.34779 * 119.99857 * 359.68930 * 7 6 5 10 10 C 1.46500 * 120.00048 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47060 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47056 * 294.99805 * 11 10 9 13 13 C 1.52997 * 109.46978 * 174.99741 * 11 10 9 14 14 N 1.46906 * 109.47053 * 55.00135 * 11 10 9 15 15 C 1.46898 * 110.99715 * 204.99863 * 14 11 10 16 16 C 1.50703 * 109.46771 * 179.97438 * 15 14 11 17 17 O 1.21289 * 119.99985 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00007 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00058 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99909 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00186 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00279 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47338 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47098 * 119.99778 * 23 21 19 26 26 H 1.48502 * 109.47400 * 239.99624 * 23 21 19 27 27 C 1.34258 * 125.75277 * 90.01003 * 3 2 1 28 28 C 1.50694 * 126.29293 * 359.94586 * 27 3 2 29 29 H 1.09004 * 109.46974 * 299.99982 * 1 2 3 30 30 H 1.09000 * 109.47324 * 59.99539 * 1 2 3 31 31 H 1.08997 * 109.47554 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46526 * 240.00297 * 2 1 3 33 33 H 1.09000 * 109.47324 * 120.00461 * 2 1 3 34 34 H 1.08006 * 125.98556 * 180.26394 * 5 4 3 35 35 H 0.96999 * 120.00240 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47025 * 59.99517 * 10 9 7 37 37 H 1.08998 * 109.47007 * 299.99619 * 10 9 7 38 38 H 1.09002 * 109.47045 * 60.00167 * 13 11 10 39 39 H 1.09000 * 109.47140 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.47375 * 300.00092 * 13 11 10 41 41 H 1.00896 * 110.99538 * 328.95036 * 14 11 10 42 42 H 1.08994 * 109.47005 * 299.99284 * 15 14 11 43 43 H 1.09001 * 109.47253 * 60.00251 * 15 14 11 44 44 H 0.96996 * 119.99768 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00361 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.47454 * 270.00628 * 28 27 3 47 47 H 1.08998 * 109.47367 * 30.00909 * 28 27 3 48 48 H 1.09002 * 109.47399 * 150.00888 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2913 2.1519 -1.1356 5 6 2.7028 3.3306 -0.7573 6 6 2.7171 3.3560 0.6553 7 6 3.1180 4.4913 1.5062 8 8 3.0800 4.3867 2.7171 9 7 3.5265 5.6451 0.9419 10 6 3.9253 6.7730 1.7874 11 6 4.3429 7.9502 0.9037 12 1 5.2365 7.6822 0.3400 13 6 4.6398 9.1671 1.7821 14 7 3.2543 8.2730 -0.0284 15 6 3.7718 8.9369 -1.2324 16 6 2.6289 9.2513 -2.1630 17 8 1.4949 8.9522 -1.8535 18 7 2.8667 9.8658 -3.3388 19 6 1.8270 10.1523 -4.1851 20 1 0.8174 9.8852 -3.9099 21 6 2.0723 10.7852 -5.3975 22 7 3.3008 11.1097 -5.7326 23 14 0.6557 11.1750 -6.5511 24 1 -0.6181 10.7099 -5.9457 25 1 0.5905 12.6412 -6.7771 26 1 0.8685 10.4832 -7.8478 27 6 2.2799 2.1207 1.0896 28 6 2.1243 1.6830 2.5231 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.9850 4.1439 -1.4095 35 1 3.5571 5.7284 -0.0240 36 1 4.7641 6.4763 2.4171 37 1 3.0862 7.0702 2.4163 38 1 5.4475 8.9276 2.4738 39 1 4.9369 10.0059 1.1526 40 1 3.7462 9.4351 2.3459 41 1 2.7276 7.4468 -0.2691 42 1 4.2753 9.8612 -0.9495 43 1 4.4787 8.2772 -1.7356 44 1 3.7736 10.1052 -3.5861 45 1 3.4721 11.5512 -6.5791 46 1 1.1181 1.9207 2.8684 47 1 2.2885 0.6079 2.5947 48 1 2.8536 2.2040 3.1434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266982233.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:17 Heat of formation + Delta-G solvation = -2.554737 kcal Electronic energy + Delta-G solvation = -28783.616610 eV Core-core repulsion = 24682.033367 eV Total energy + Delta-G solvation = -4101.583243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70141 -39.43569 -38.34545 -36.87963 -35.01240 -34.08562 -33.65892 -32.38892 -31.33096 -30.90773 -29.92159 -27.82759 -26.62817 -25.90157 -24.23686 -23.87079 -22.57038 -20.66049 -20.45038 -19.77376 -19.26154 -17.97746 -17.74747 -16.61457 -16.01099 -15.99226 -15.78440 -15.44535 -15.28876 -14.94868 -14.57778 -14.39042 -14.17652 -13.88499 -13.85177 -13.46210 -13.35880 -13.32680 -12.84039 -12.72678 -12.63384 -12.52412 -12.40802 -12.31751 -11.87802 -11.77341 -11.71052 -11.63705 -11.40027 -11.09121 -11.01757 -10.82508 -10.34056 -10.22332 -9.88887 -9.65351 -9.52098 -9.18166 -8.73577 -8.46489 -8.11049 -7.96258 -6.41955 -3.82602 1.31678 2.01650 2.05395 3.16489 3.18982 3.27345 3.34699 3.40698 3.89945 4.05293 4.10073 4.27439 4.30073 4.49546 4.57274 4.64686 4.72649 4.79718 4.97772 5.01062 5.08873 5.20538 5.22327 5.25832 5.26843 5.32832 5.35411 5.56143 5.58700 5.66535 5.70991 5.75858 5.80151 5.86038 5.97651 6.02137 6.20843 6.22710 6.31241 6.43717 6.61032 7.17848 7.32770 7.48079 7.55549 7.60197 8.06400 8.23910 8.60972 9.18034 9.54083 10.05397 10.75823 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.002549 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.200262 B =10982.189966 C =13204.453004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.361 5.361 4 N -0.294 5.294 5 C 0.086 3.914 6 C -0.300 4.300 7 C 0.601 3.399 8 O -0.551 6.551 9 N -0.728 5.728 10 C 0.122 3.878 11 C 0.071 3.929 12 H 0.049 0.951 13 C -0.138 4.138 14 N -0.664 5.664 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.158 3.842 28 C -0.098 4.098 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.190 0.810 35 H 0.397 0.603 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.348 0.652 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -19.703 14.176 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 N -0.141 5.141 4 N -0.113 5.113 5 C -0.102 4.102 6 C -0.314 4.314 7 C 0.389 3.611 8 O -0.430 6.430 9 N -0.380 5.380 10 C -0.002 4.002 11 C -0.040 4.040 12 H 0.067 0.933 13 C -0.196 4.196 14 N -0.299 5.299 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C 0.025 3.975 28 C -0.157 4.157 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.206 0.794 35 H 0.232 0.768 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.169 0.831 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.452 -20.203 14.367 24.911 hybrid contribution 0.550 0.347 -1.352 1.500 sum 3.002 -19.856 13.015 23.931 Atomic orbital electron populations 1.22194 0.93795 1.03335 1.03650 1.21783 0.95649 0.77523 1.04742 1.48606 1.49752 1.12319 1.03397 1.77231 1.22290 1.04463 1.07276 1.24073 0.96674 0.95591 0.93834 1.19959 1.21583 0.96411 0.93496 1.17117 0.75883 0.81288 0.86820 1.90713 1.55432 1.82795 1.14099 1.45787 1.68436 1.13411 1.10367 1.21576 1.00990 0.84361 0.93260 1.21818 0.93367 0.94506 0.94260 0.93333 1.21733 1.01642 0.97035 0.99201 1.60121 1.23048 1.32213 1.14564 1.21760 0.96212 0.99854 0.90539 1.19808 0.89830 0.84512 0.83364 1.90537 1.23069 1.57455 1.75496 1.41870 1.10436 1.51898 1.15826 1.19748 0.90076 1.35391 0.97533 0.87873 1.25257 0.97543 0.97152 0.98009 1.69618 1.19122 1.41621 1.23960 0.85810 0.80979 0.78029 0.79598 1.19203 1.20744 1.20780 1.21495 0.94144 0.90708 0.91118 1.20685 1.05103 1.01396 0.88472 0.91810 0.91281 0.90214 0.88261 0.88648 0.79371 0.76764 0.90836 0.90300 0.92501 0.92027 0.91515 0.83090 0.89398 0.93838 0.77478 0.91931 0.89508 0.91275 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 37.16 0.38 -0.60 16 2 C 0.12 0.78 6.93 -4.04 -0.03 0.75 16 3 N -0.36 -3.73 3.58 -56.61 -0.20 -3.94 16 4 N -0.29 -3.74 12.50 30.86 0.39 -3.35 16 5 C 0.09 1.04 11.50 -16.98 -0.20 0.85 16 6 C -0.30 -3.73 6.13 -105.07 -0.64 -4.37 16 7 C 0.60 8.04 7.81 -12.52 -0.10 7.94 16 8 O -0.55 -8.51 14.84 5.28 0.08 -8.44 16 9 N -0.73 -8.61 4.98 -61.38 -0.31 -8.92 16 10 C 0.12 1.41 5.31 -4.04 -0.02 1.39 16 11 C 0.07 0.83 2.81 -67.71 -0.19 0.64 16 12 H 0.05 0.53 7.80 -51.93 -0.41 0.12 16 13 C -0.14 -1.50 9.41 37.16 0.35 -1.15 16 14 N -0.66 -10.28 5.93 -107.99 -0.64 -10.92 16 15 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 16 C 0.44 10.18 7.82 -10.98 -0.09 10.09 16 17 O -0.58 -15.63 15.78 5.55 0.09 -15.55 16 18 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 19 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 23 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.16 1.72 7.01 -81.60 -0.57 1.15 16 28 C -0.10 -0.80 9.57 36.00 0.34 -0.46 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.36 7.02 -51.93 -0.36 -0.01 16 34 H 0.19 1.86 7.50 -52.48 -0.39 1.47 16 35 H 0.40 4.29 6.33 -40.82 -0.26 4.03 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.35 5.57 6.41 -39.29 -0.25 5.32 16 42 H 0.09 1.39 7.43 -51.93 -0.39 1.00 16 43 H 0.04 0.64 8.06 -51.93 -0.42 0.23 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.36 7.05 -51.93 -0.37 0.00 16 48 H 0.11 1.03 6.50 -51.93 -0.34 0.70 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -34.98 400.69 -7.15 -42.14 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -7.21 Total: 15.65 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -1.03 Total: 9.10 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.10 Total: -64.97 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.17 Total: -23.98 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.98 -7.15 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266982233.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.581 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds