Wall clock time and date at job start Tue Mar 31 2020 20:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46974 * 2 1 4 4 N 1.39939 * 125.75515 * 269.97392 * 3 2 1 5 5 C 1.30450 * 108.89327 * 179.77764 * 4 3 2 6 6 C 1.41284 * 108.02508 * 0.38587 * 5 4 3 7 7 C 1.47431 * 126.41495 * 179.87960 * 6 5 4 8 8 O 1.21602 * 120.00114 * 179.68473 * 7 6 5 9 9 N 1.34779 * 119.99857 * 359.68930 * 7 6 5 10 10 C 1.46500 * 120.00048 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47060 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47056 * 294.99805 * 11 10 9 13 13 C 1.52997 * 109.46978 * 174.99741 * 11 10 9 14 14 N 1.46906 * 109.47053 * 55.00135 * 11 10 9 15 15 C 1.46898 * 110.99715 * 204.99863 * 14 11 10 16 16 C 1.50703 * 109.46771 * 179.97438 * 15 14 11 17 17 O 1.21289 * 119.99985 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00007 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00058 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99909 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00186 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00279 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47338 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47098 * 119.99778 * 23 21 19 26 26 H 1.48502 * 109.47400 * 239.99624 * 23 21 19 27 27 C 1.34258 * 125.75277 * 90.01003 * 3 2 1 28 28 C 1.50694 * 126.29293 * 359.94586 * 27 3 2 29 29 H 1.09004 * 109.46974 * 299.99982 * 1 2 3 30 30 H 1.09000 * 109.47324 * 59.99539 * 1 2 3 31 31 H 1.08997 * 109.47554 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46526 * 240.00297 * 2 1 3 33 33 H 1.09000 * 109.47324 * 120.00461 * 2 1 3 34 34 H 1.08006 * 125.98556 * 180.26394 * 5 4 3 35 35 H 0.96999 * 120.00240 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47025 * 59.99517 * 10 9 7 37 37 H 1.08998 * 109.47007 * 299.99619 * 10 9 7 38 38 H 1.09002 * 109.47045 * 60.00167 * 13 11 10 39 39 H 1.09000 * 109.47140 * 180.02562 * 13 11 10 40 40 H 1.09001 * 109.47375 * 300.00092 * 13 11 10 41 41 H 1.00896 * 110.99538 * 328.95036 * 14 11 10 42 42 H 1.08994 * 109.47005 * 299.99284 * 15 14 11 43 43 H 1.09001 * 109.47253 * 60.00251 * 15 14 11 44 44 H 0.96996 * 119.99768 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00361 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.47454 * 270.00628 * 28 27 3 47 47 H 1.08998 * 109.47367 * 30.00909 * 28 27 3 48 48 H 1.09002 * 109.47399 * 150.00888 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2913 2.1519 -1.1356 5 6 2.7028 3.3306 -0.7573 6 6 2.7171 3.3560 0.6553 7 6 3.1180 4.4913 1.5062 8 8 3.0800 4.3867 2.7171 9 7 3.5265 5.6451 0.9419 10 6 3.9253 6.7730 1.7874 11 6 4.3429 7.9502 0.9037 12 1 5.2365 7.6822 0.3400 13 6 4.6398 9.1671 1.7821 14 7 3.2543 8.2730 -0.0284 15 6 3.7718 8.9369 -1.2324 16 6 2.6289 9.2513 -2.1630 17 8 1.4949 8.9522 -1.8535 18 7 2.8667 9.8658 -3.3388 19 6 1.8270 10.1523 -4.1851 20 1 0.8174 9.8852 -3.9099 21 6 2.0723 10.7852 -5.3975 22 7 3.3008 11.1097 -5.7326 23 14 0.6557 11.1750 -6.5511 24 1 -0.6181 10.7099 -5.9457 25 1 0.5905 12.6412 -6.7771 26 1 0.8685 10.4832 -7.8478 27 6 2.2799 2.1207 1.0896 28 6 2.1243 1.6830 2.5231 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.9850 4.1439 -1.4095 35 1 3.5571 5.7284 -0.0240 36 1 4.7641 6.4763 2.4171 37 1 3.0862 7.0702 2.4163 38 1 5.4475 8.9276 2.4738 39 1 4.9369 10.0059 1.1526 40 1 3.7462 9.4351 2.3459 41 1 2.7276 7.4468 -0.2691 42 1 4.2753 9.8612 -0.9495 43 1 4.4787 8.2772 -1.7356 44 1 3.7736 10.1052 -3.5861 45 1 3.4721 11.5512 -6.5791 46 1 1.1181 1.9207 2.8684 47 1 2.2885 0.6079 2.5947 48 1 2.8536 2.2040 3.1434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266982233.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:16 Heat of formation + Delta-G solvation = -29.581380 kcal Electronic energy + Delta-G solvation = -28784.788574 eV Core-core repulsion = 24682.033367 eV Total energy + Delta-G solvation = -4102.755206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53963 -40.52407 -40.02149 -38.10476 -35.96933 -35.69082 -34.84560 -33.26522 -33.15832 -32.11664 -30.66655 -28.61762 -28.10262 -26.98709 -25.68063 -24.74600 -23.48922 -21.63849 -21.32628 -21.10815 -20.55243 -19.90452 -18.76690 -17.84646 -17.15035 -16.99698 -16.75808 -16.71373 -16.46002 -16.24771 -15.83920 -15.73632 -15.30941 -15.22182 -14.86247 -14.68074 -14.27607 -14.10376 -13.94418 -13.68498 -13.54492 -13.47182 -13.34106 -13.28450 -13.22524 -12.91794 -12.90550 -12.76479 -12.53850 -12.38498 -12.27710 -12.11541 -11.86450 -11.81008 -11.50320 -10.91316 -10.45459 -10.32500 -10.17778 -9.99920 -9.61392 -9.34300 -8.46024 -5.94100 0.47150 1.09446 1.34733 1.36624 1.42160 1.55975 2.06810 2.24586 2.30050 2.43169 2.90403 3.21777 3.43144 3.51575 3.55965 3.74701 3.92133 3.96690 4.02543 4.18912 4.21542 4.29365 4.31619 4.41169 4.43161 4.48601 4.62642 4.64027 4.68501 4.71532 4.78502 4.87189 4.95971 4.97205 5.08690 5.09137 5.18271 5.34734 5.38335 5.42422 5.51552 5.90126 5.90587 6.11535 6.37702 6.43019 6.56093 6.61632 7.14330 7.24464 7.58206 8.13790 8.71542 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.002549 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.200262 B =10982.189966 C =13204.453004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.356 5.356 4 N -0.324 5.324 5 C 0.080 3.920 6 C -0.326 4.326 7 C 0.598 3.402 8 O -0.577 6.577 9 N -0.723 5.723 10 C 0.127 3.873 11 C 0.077 3.923 12 H 0.069 0.931 13 C -0.136 4.136 14 N -0.681 5.681 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.331 4.331 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.159 3.841 28 C -0.094 4.094 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.200 0.800 35 H 0.402 0.598 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.342 0.658 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.538 -20.817 14.553 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.006 4.006 3 N -0.136 5.136 4 N -0.143 5.143 5 C -0.107 4.107 6 C -0.341 4.341 7 C 0.388 3.612 8 O -0.459 6.459 9 N -0.375 5.375 10 C 0.003 3.997 11 C -0.032 4.032 12 H 0.087 0.913 13 C -0.195 4.195 14 N -0.316 5.316 15 C -0.068 4.068 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.460 4.460 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.196 1.196 27 C 0.025 3.975 28 C -0.152 4.152 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.146 0.854 34 H 0.217 0.783 35 H 0.238 0.762 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.163 0.837 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.121 0.879 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.366 -21.315 14.728 26.126 hybrid contribution 0.260 0.620 -1.410 1.562 sum 3.627 -20.695 13.317 24.876 Atomic orbital electron populations 1.22169 0.93365 1.04691 1.02225 1.22221 0.95995 0.75742 1.06674 1.48943 1.48841 1.13274 1.02565 1.77155 1.23229 1.05048 1.08878 1.24295 0.96505 0.95879 0.94035 1.20068 1.23336 0.97048 0.93637 1.17295 0.75566 0.81771 0.86612 1.90689 1.56779 1.83341 1.15062 1.45760 1.67916 1.13109 1.10682 1.21544 1.00808 0.84183 0.93133 1.21876 0.92760 0.94905 0.93662 0.91331 1.21745 1.02007 0.96410 0.99315 1.60129 1.24757 1.32346 1.14364 1.21623 0.93769 1.01494 0.89932 1.20914 0.90974 0.82441 0.83181 1.90508 1.25528 1.58619 1.76310 1.41926 1.10049 1.52656 1.16390 1.19665 0.89899 1.37354 0.99126 0.90497 1.25993 1.00014 0.96405 0.98801 1.69669 1.20305 1.41550 1.24552 0.84911 0.77719 0.78229 0.77738 1.19929 1.19653 1.19588 1.21935 0.92884 0.90334 0.92354 1.20737 1.04888 1.03333 0.86262 0.92126 0.93736 0.87454 0.87662 0.85409 0.78328 0.76179 0.89467 0.91938 0.89921 0.92300 0.92763 0.83718 0.87651 0.90926 0.76920 0.91332 0.88890 0.87877 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 71.98 0.74 -0.91 16 2 C 0.11 1.19 6.93 86.38 0.60 1.79 16 3 N -0.36 -7.07 3.58 -333.01 -1.19 -8.26 16 4 N -0.32 -8.26 12.50 -56.27 -0.70 -8.96 16 5 C 0.08 1.96 11.50 85.65 0.99 2.95 16 6 C -0.33 -8.15 6.13 -20.15 -0.12 -8.27 16 7 C 0.60 16.08 7.81 86.66 0.68 16.75 16 8 O -0.58 -17.92 14.84 -4.04 -0.06 -17.98 16 9 N -0.72 -16.85 4.98 -466.36 -2.32 -19.17 16 10 C 0.13 2.80 5.31 86.38 0.46 3.26 16 11 C 0.08 1.67 2.81 44.91 0.13 1.79 16 12 H 0.07 1.27 7.80 -2.39 -0.02 1.25 16 13 C -0.14 -2.69 9.41 71.98 0.68 -2.01 16 14 N -0.68 -20.44 5.93 -495.58 -2.94 -23.38 16 15 C 0.06 2.07 5.97 85.56 0.51 2.58 16 16 C 0.44 20.40 7.82 87.66 0.69 21.08 16 17 O -0.62 -34.36 15.78 -3.06 -0.05 -34.41 16 18 N -0.57 -28.98 5.29 -306.98 -1.62 -30.60 16 19 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 23 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 C 0.16 3.34 7.01 42.14 0.30 3.64 16 28 C -0.09 -1.39 9.57 71.23 0.68 -0.71 16 29 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.13 0.52 7.02 -2.39 -0.02 0.51 16 34 H 0.20 4.04 7.50 -2.91 -0.02 4.02 16 35 H 0.40 8.54 6.33 -92.71 -0.59 7.96 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.34 10.90 6.41 -89.70 -0.58 10.33 16 42 H 0.11 3.09 7.43 -2.39 -0.02 3.08 16 43 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 44 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 45 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.10 0.77 7.05 -2.39 -0.02 0.75 16 48 H 0.09 1.70 6.50 -2.39 -0.02 1.69 16 Total: -1.00 -77.27 400.69 0.13 -77.14 By element: Atomic # 1 Polarization: 46.64 SS G_CDS: -0.88 Total: 45.76 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 7.59 Total: 23.83 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -8.49 Total: -139.46 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -0.11 Total: -52.39 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -77.27 0.13 -77.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266982233.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.555 kcal (2) G-P(sol) polarization free energy of solvation -77.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds