Wall clock time and date at job start Tue Mar 31 2020 20:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47352 * 2 1 4 4 C 1.35842 * 126.13725 * 269.97686 * 3 2 1 5 5 N 1.30180 * 109.00314 * 179.77994 * 4 3 2 6 6 C 1.35761 * 108.86491 * 0.38534 * 5 4 3 7 7 C 1.47325 * 126.23520 * 179.88356 * 6 5 4 8 8 O 1.21626 * 119.99933 * 179.68820 * 7 6 5 9 9 N 1.34779 * 119.99908 * 359.68891 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47704 * 54.99481 * 12 11 10 14 14 C 1.53000 * 109.47194 * 175.00077 * 12 11 10 15 15 N 1.46909 * 109.46754 * 294.99510 * 12 11 10 16 16 C 1.46902 * 110.99504 * 155.00241 * 15 12 11 17 17 C 1.50702 * 109.46730 * 180.02562 * 16 15 12 18 18 O 1.21295 * 119.99801 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00164 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00303 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99853 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99926 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99832 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00106 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47014 * 89.99986 * 24 22 20 26 26 H 1.48503 * 109.47345 * 209.99578 * 24 22 20 27 27 H 1.48497 * 109.47311 * 329.99861 * 24 22 20 28 28 C 1.35382 * 126.13355 * 90.00187 * 3 2 1 29 29 H 1.08994 * 109.47453 * 59.99703 * 1 2 3 30 30 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46976 * 299.99421 * 1 2 3 32 32 H 1.08999 * 109.47423 * 240.00289 * 2 1 3 33 33 H 1.09002 * 109.47728 * 120.00270 * 2 1 3 34 34 H 1.08000 * 125.49959 * 0.02562 * 4 3 2 35 35 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 37 37 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 38 38 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 39 39 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 40 40 H 1.09002 * 109.46818 * 299.99696 * 14 12 11 41 41 H 1.09004 * 109.47242 * 59.99175 * 14 12 11 42 42 H 1.09000 * 109.47237 * 179.97438 * 14 12 11 43 43 H 1.00899 * 110.99745 * 31.05175 * 15 12 11 44 44 H 1.08996 * 109.47071 * 299.99790 * 16 15 12 45 45 H 1.08993 * 109.47443 * 60.00317 * 16 15 12 46 46 H 0.97003 * 120.00110 * 0.02562 * 19 17 16 47 47 H 0.96996 * 120.00226 * 180.02562 * 23 22 20 48 48 H 1.08006 * 126.56285 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1363 -1.0971 5 7 2.6959 3.3108 -0.7136 6 6 2.7142 3.3479 0.6434 7 6 3.1184 4.4927 1.4779 8 8 3.0856 4.4030 2.6905 9 7 3.5244 5.6395 0.8978 10 6 3.9268 6.7777 1.7276 11 6 4.3393 7.9443 0.8277 12 6 4.7602 9.1328 1.6944 13 1 5.5424 8.8195 2.3857 14 6 5.2901 10.2546 0.7990 15 7 3.6010 9.6194 2.4545 16 6 4.0268 10.3101 3.6791 17 6 2.8134 10.7933 4.4310 18 8 1.7032 10.5825 3.9902 19 7 2.9618 11.4587 5.5935 20 6 1.8580 11.8988 6.2773 21 1 0.8695 11.7119 5.8845 22 6 2.0110 12.5843 7.4762 23 7 0.9530 13.0057 8.1318 24 14 3.7208 12.9069 8.1559 25 1 4.2231 14.2044 7.6367 26 1 3.6627 12.9564 9.6390 27 1 4.6357 11.8166 7.7325 28 6 2.2845 2.1338 1.0934 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1724 1.8155 -2.1221 35 1 3.5508 5.7108 -0.0692 36 1 4.7684 6.4888 2.3573 37 1 3.0903 7.0825 2.3565 38 1 5.1756 7.6398 0.1985 39 1 3.4975 8.2330 0.1984 40 1 6.1502 9.8936 0.2350 41 1 4.5078 10.5679 0.1076 42 1 5.5896 11.1015 1.4164 43 1 2.9656 8.8650 2.6671 44 1 4.5922 9.6213 4.3067 45 1 4.6547 11.1613 3.4165 46 1 3.8497 11.6269 5.9462 47 1 1.0598 13.4845 8.9685 48 1 2.1778 1.8308 2.1246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267152157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:03 Heat of formation + Delta-G solvation = -12.955585 kcal Electronic energy + Delta-G solvation = -27880.204914 eV Core-core repulsion = 23778.170656 eV Total energy + Delta-G solvation = -4102.034258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56909 -39.45764 -38.53834 -37.16193 -35.51982 -34.70471 -33.86750 -31.72827 -31.40639 -30.84466 -30.16575 -28.79241 -26.53099 -24.92767 -24.02438 -23.51071 -22.43063 -21.30981 -20.66516 -20.00577 -19.30085 -18.35461 -18.17176 -16.54714 -16.45018 -16.06835 -15.96969 -15.57208 -15.32680 -15.05563 -14.90723 -14.64522 -14.35601 -14.19028 -13.89217 -13.87147 -13.54641 -13.26673 -13.14333 -12.96502 -12.76995 -12.57030 -12.17748 -12.10855 -12.05699 -11.91159 -11.64065 -11.27894 -11.22439 -11.11572 -10.77012 -10.66866 -10.53468 -10.21699 -10.11787 -9.91073 -9.50322 -9.20113 -8.90465 -8.48983 -8.12297 -8.05860 -6.24566 -3.75570 1.29825 2.08285 2.15796 3.08373 3.12185 3.14190 3.19912 3.41192 3.82468 3.96261 4.06944 4.15109 4.18852 4.25175 4.31201 4.51256 4.67563 4.78262 4.90129 4.92437 4.93618 4.97159 5.05567 5.16503 5.28456 5.39483 5.40766 5.47377 5.58510 5.63791 5.69506 5.78974 5.87473 5.91981 5.97634 6.02663 6.06040 6.10475 6.35864 6.36991 6.58863 7.21503 7.28612 7.58660 7.65123 7.67909 8.18819 8.21916 8.67124 9.02111 9.49688 9.90764 10.88734 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.001860 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.993906 B =15049.222275 C =16281.796521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.185 3.815 5 N -0.464 5.464 6 C -0.062 4.062 7 C 0.601 3.399 8 O -0.542 6.542 9 N -0.714 5.714 10 C 0.113 3.887 11 C -0.132 4.132 12 C 0.086 3.914 13 H 0.045 0.955 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.047 3.953 17 C 0.451 3.549 18 O -0.564 6.564 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.036 3.964 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.211 0.789 35 H 0.408 0.592 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.351 0.649 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.596 -26.386 -20.412 34.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.099 4.099 5 N -0.183 5.183 6 C -0.191 4.191 7 C 0.387 3.613 8 O -0.419 6.419 9 N -0.365 5.365 10 C -0.010 4.010 11 C -0.170 4.170 12 C -0.024 4.024 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.086 4.086 17 C 0.237 3.763 18 O -0.445 6.445 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.103 4.103 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.227 0.773 35 H 0.243 0.757 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.173 0.827 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.083 0.917 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.840 -25.351 -20.518 33.543 hybrid contribution 1.297 -1.049 1.297 2.113 sum 9.137 -26.400 -19.221 33.910 Atomic orbital electron populations 1.22190 0.93607 1.03557 1.03675 1.21983 0.96021 0.79191 1.05168 1.45552 1.48342 1.13249 1.06824 1.25156 1.03632 0.87421 0.93647 1.70597 1.18105 1.19232 1.10359 1.20564 1.12499 0.95542 0.90515 1.16906 0.76659 0.81368 0.86371 1.90834 1.54818 1.82887 1.13408 1.45714 1.67093 1.12762 1.10934 1.21487 1.00578 0.85146 0.93824 1.21976 1.02702 0.93714 0.98657 1.21460 0.92410 0.93461 0.95075 0.93726 1.21787 1.00280 0.98117 0.99515 1.60202 1.15058 1.33377 1.21490 1.21759 0.96682 0.99176 0.90959 1.19740 0.90219 0.83707 0.82668 1.90567 1.26248 1.59623 1.68085 1.42206 1.08291 1.51846 1.20824 1.19438 0.88459 1.32362 1.02928 0.86301 1.25034 0.97571 0.97258 0.96378 1.69623 1.28482 1.37871 1.16337 0.86664 0.84075 0.79007 0.79602 1.19643 1.20247 1.19506 1.22622 1.02504 0.91844 0.93336 0.91554 0.90200 0.91496 0.88360 0.88597 0.77302 0.75657 0.91453 0.90874 0.90547 0.89904 0.92838 0.91756 0.92516 0.82711 0.93716 0.89466 0.79715 0.91691 0.79531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.39 10.24 37.16 0.38 -0.01 16 2 C 0.10 0.21 6.84 -4.04 -0.03 0.18 16 3 N -0.46 -2.78 2.73 -118.36 -0.32 -3.10 16 4 C 0.19 1.26 12.55 -89.91 -1.13 0.13 16 5 N -0.46 -4.80 11.01 -11.03 -0.12 -4.92 16 6 C -0.06 -0.73 6.98 -83.09 -0.58 -1.31 16 7 C 0.60 8.41 7.81 -12.56 -0.10 8.31 16 8 O -0.54 -9.36 16.88 5.25 0.09 -9.27 16 9 N -0.71 -8.53 5.55 -61.41 -0.34 -8.87 16 10 C 0.11 1.37 5.50 -4.04 -0.02 1.35 16 11 C -0.13 -1.35 4.92 -26.73 -0.13 -1.48 16 12 C 0.09 1.04 2.65 -67.71 -0.18 0.86 16 13 H 0.04 0.51 7.80 -51.93 -0.40 0.11 16 14 C -0.14 -1.52 9.41 37.16 0.35 -1.17 16 15 N -0.67 -10.77 5.93 -107.99 -0.64 -11.41 16 16 C 0.05 0.82 5.97 -4.97 -0.03 0.79 16 17 C 0.45 10.70 7.82 -10.99 -0.09 10.62 16 18 O -0.56 -15.77 15.78 5.54 0.09 -15.68 16 19 N -0.59 -14.66 5.09 -10.96 -0.06 -14.71 16 20 C -0.30 -8.85 10.16 -14.93 -0.15 -9.01 16 21 H 0.12 3.96 7.39 -52.49 -0.39 3.57 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.43 13.96 55.50 0.77 -25.66 16 24 Si 0.88 19.95 27.74 -169.99 -4.71 15.24 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -5.60 6.52 56.52 0.37 -5.23 16 28 C 0.04 0.32 11.26 -16.64 -0.19 0.14 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.41 4.18 8.19 -40.82 -0.33 3.84 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.06 6.43 -51.93 -0.33 0.72 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 43 H 0.35 6.06 6.17 -39.29 -0.24 5.82 16 44 H 0.04 0.70 8.05 -51.93 -0.42 0.28 16 45 H 0.09 1.36 7.43 -51.93 -0.39 0.97 16 46 H 0.37 8.05 5.76 -40.82 -0.24 7.82 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.19 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -38.33 403.52 -8.52 -46.85 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -7.37 Total: 15.01 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -1.99 Total: 10.44 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -0.71 Total: -68.67 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.18 Total: -24.95 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.71 Total: 15.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.33 -8.52 -46.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.896 kcal (2) G-P(sol) polarization free energy of solvation -38.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds