Wall clock time and date at job start Tue Mar 31 2020 20:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47352 * 2 1 4 4 C 1.35842 * 126.13725 * 269.97686 * 3 2 1 5 5 N 1.30180 * 109.00314 * 179.77994 * 4 3 2 6 6 C 1.35761 * 108.86491 * 0.38534 * 5 4 3 7 7 C 1.47325 * 126.23520 * 179.88356 * 6 5 4 8 8 O 1.21626 * 119.99933 * 179.68820 * 7 6 5 9 9 N 1.34779 * 119.99908 * 359.68891 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47704 * 54.99481 * 12 11 10 14 14 C 1.53000 * 109.47194 * 175.00077 * 12 11 10 15 15 N 1.46909 * 109.46754 * 294.99510 * 12 11 10 16 16 C 1.46902 * 110.99504 * 155.00241 * 15 12 11 17 17 C 1.50702 * 109.46730 * 180.02562 * 16 15 12 18 18 O 1.21295 * 119.99801 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00164 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00303 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99853 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99926 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99832 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00106 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47014 * 89.99986 * 24 22 20 26 26 H 1.48503 * 109.47345 * 209.99578 * 24 22 20 27 27 H 1.48497 * 109.47311 * 329.99861 * 24 22 20 28 28 C 1.35382 * 126.13355 * 90.00187 * 3 2 1 29 29 H 1.08994 * 109.47453 * 59.99703 * 1 2 3 30 30 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46976 * 299.99421 * 1 2 3 32 32 H 1.08999 * 109.47423 * 240.00289 * 2 1 3 33 33 H 1.09002 * 109.47728 * 120.00270 * 2 1 3 34 34 H 1.08000 * 125.49959 * 0.02562 * 4 3 2 35 35 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 37 37 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 38 38 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 39 39 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 40 40 H 1.09002 * 109.46818 * 299.99696 * 14 12 11 41 41 H 1.09004 * 109.47242 * 59.99175 * 14 12 11 42 42 H 1.09000 * 109.47237 * 179.97438 * 14 12 11 43 43 H 1.00899 * 110.99745 * 31.05175 * 15 12 11 44 44 H 1.08996 * 109.47071 * 299.99790 * 16 15 12 45 45 H 1.08993 * 109.47443 * 60.00317 * 16 15 12 46 46 H 0.97003 * 120.00110 * 0.02562 * 19 17 16 47 47 H 0.96996 * 120.00226 * 180.02562 * 23 22 20 48 48 H 1.08006 * 126.56285 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2858 2.1363 -1.0971 5 7 2.6959 3.3108 -0.7136 6 6 2.7142 3.3479 0.6434 7 6 3.1184 4.4927 1.4779 8 8 3.0856 4.4030 2.6905 9 7 3.5244 5.6395 0.8978 10 6 3.9268 6.7777 1.7276 11 6 4.3393 7.9443 0.8277 12 6 4.7602 9.1328 1.6944 13 1 5.5424 8.8195 2.3857 14 6 5.2901 10.2546 0.7990 15 7 3.6010 9.6194 2.4545 16 6 4.0268 10.3101 3.6791 17 6 2.8134 10.7933 4.4310 18 8 1.7032 10.5825 3.9902 19 7 2.9618 11.4587 5.5935 20 6 1.8580 11.8988 6.2773 21 1 0.8695 11.7119 5.8845 22 6 2.0110 12.5843 7.4762 23 7 0.9530 13.0057 8.1318 24 14 3.7208 12.9069 8.1559 25 1 4.2231 14.2044 7.6367 26 1 3.6627 12.9564 9.6390 27 1 4.6357 11.8166 7.7325 28 6 2.2845 2.1338 1.0934 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1724 1.8155 -2.1221 35 1 3.5508 5.7108 -0.0692 36 1 4.7684 6.4888 2.3573 37 1 3.0903 7.0825 2.3565 38 1 5.1756 7.6398 0.1985 39 1 3.4975 8.2330 0.1984 40 1 6.1502 9.8936 0.2350 41 1 4.5078 10.5679 0.1076 42 1 5.5896 11.1015 1.4164 43 1 2.9656 8.8650 2.6671 44 1 4.5922 9.6213 4.3067 45 1 4.6547 11.1613 3.4165 46 1 3.8497 11.6269 5.9462 47 1 1.0598 13.4845 8.9685 48 1 2.1778 1.8308 2.1246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267152157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:02 Heat of formation + Delta-G solvation = -43.514980 kcal Electronic energy + Delta-G solvation = -27881.530068 eV Core-core repulsion = 23778.170656 eV Total energy + Delta-G solvation = -4103.359413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.17505 -40.55443 -40.27058 -38.39844 -36.10651 -35.96518 -35.65127 -33.77494 -32.68959 -31.30848 -30.92835 -29.61701 -28.20584 -25.88991 -25.23651 -24.34339 -23.31045 -21.82790 -21.63079 -21.32902 -20.89516 -20.27033 -18.89819 -17.85934 -17.34124 -17.19201 -16.96765 -16.78481 -16.64067 -16.36707 -15.79495 -15.57808 -15.45286 -15.08118 -14.90701 -14.81689 -14.65574 -14.53820 -14.40717 -14.28118 -13.92607 -13.51323 -13.40166 -13.16491 -12.99143 -12.90208 -12.58211 -12.42515 -12.27009 -12.23201 -12.18019 -11.97504 -11.76733 -11.52059 -11.40917 -11.09245 -10.77543 -10.44412 -10.25626 -10.21146 -9.63092 -9.31652 -8.41973 -6.03004 0.52796 1.29831 1.35255 1.42699 1.44157 1.68063 1.94601 2.22666 2.26069 2.49988 2.73263 3.13936 3.38861 3.41613 3.75407 3.79906 3.88512 3.95883 4.08862 4.09986 4.16560 4.17469 4.40499 4.41271 4.43232 4.47659 4.52545 4.59612 4.66482 4.72284 4.83225 4.97166 5.02788 5.04794 5.10277 5.20265 5.22653 5.39219 5.41125 5.49416 5.53150 5.91053 6.09887 6.10701 6.38221 6.45548 6.59174 6.84388 6.87068 7.19966 7.38607 7.95598 8.75850 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.001860 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.993906 B =15049.222275 C =16281.796521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.449 5.449 4 C 0.198 3.802 5 N -0.495 5.495 6 C -0.099 4.099 7 C 0.593 3.407 8 O -0.588 6.588 9 N -0.705 5.705 10 C 0.117 3.883 11 C -0.118 4.118 12 C 0.086 3.914 13 H 0.060 0.940 14 C -0.136 4.136 15 N -0.685 5.685 16 C 0.061 3.939 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.590 5.590 20 C -0.330 4.330 21 H 0.053 0.947 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.967 3.033 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.233 1.233 28 C 0.038 3.962 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.252 0.748 35 H 0.417 0.583 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.340 0.660 44 H 0.073 0.927 45 H 0.117 0.883 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.291 -28.025 -22.131 37.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.130 5.130 4 C -0.086 4.086 5 N -0.214 5.214 6 C -0.227 4.227 7 C 0.381 3.619 8 O -0.469 6.469 9 N -0.355 5.355 10 C -0.007 4.007 11 C -0.156 4.156 12 C -0.024 4.024 13 H 0.078 0.922 14 C -0.194 4.194 15 N -0.320 5.320 16 C -0.071 4.071 17 C 0.235 3.765 18 O -0.500 6.500 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.787 3.213 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.156 1.156 28 C -0.103 4.103 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.148 0.852 33 H 0.125 0.875 34 H 0.268 0.732 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.160 0.840 44 H 0.091 0.909 45 H 0.134 0.866 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 11.559 -27.004 -22.298 36.879 hybrid contribution -0.025 -0.656 1.710 1.832 sum 11.534 -27.660 -20.588 36.359 Atomic orbital electron populations 1.22176 0.93717 1.04446 1.02427 1.22344 0.95807 0.77137 1.07330 1.45804 1.47150 1.14359 1.05671 1.25987 1.01088 0.86346 0.95223 1.70524 1.19910 1.21396 1.09559 1.20398 1.15205 0.95745 0.91337 1.17373 0.76044 0.82339 0.86181 1.90787 1.57026 1.83826 1.15290 1.45666 1.66295 1.12247 1.11338 1.21417 0.99301 0.85915 0.94099 1.21892 1.03559 0.92139 0.98051 1.21620 0.91188 0.94370 0.95211 0.92234 1.21783 1.00904 0.97512 0.99180 1.60259 1.16957 1.33603 1.21159 1.21695 0.93437 1.00803 0.91208 1.21040 0.91677 0.81759 0.82045 1.90542 1.29193 1.61033 1.69220 1.42027 1.07855 1.52228 1.21115 1.19013 0.87648 1.34740 1.04545 0.92847 1.26145 1.03700 0.95790 0.95824 1.69806 1.32105 1.38512 1.17056 0.85338 0.77072 0.80475 0.78461 1.17899 1.19904 1.15619 1.22749 1.01570 0.91564 0.94455 0.91924 0.88251 0.93591 0.85220 0.87500 0.73190 0.74604 0.91602 0.93860 0.87524 0.90440 0.89976 0.92874 0.92857 0.83952 0.90911 0.86557 0.77441 0.91112 0.79048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.46 10.24 71.98 0.74 0.28 16 2 C 0.09 0.15 6.84 86.38 0.59 0.74 16 3 N -0.45 -4.66 2.73 -528.38 -1.44 -6.10 16 4 C 0.20 2.26 12.55 180.10 2.26 4.52 16 5 N -0.49 -9.88 11.01 -188.82 -2.08 -11.96 16 6 C -0.10 -2.36 6.98 40.50 0.28 -2.08 16 7 C 0.59 17.44 7.81 86.63 0.68 18.12 16 8 O -0.59 -21.62 16.88 -4.11 -0.07 -21.69 16 9 N -0.70 -17.27 5.55 -466.45 -2.59 -19.86 16 10 C 0.12 2.86 5.50 86.38 0.48 3.34 16 11 C -0.12 -2.24 4.92 30.59 0.15 -2.09 16 12 C 0.09 1.86 2.65 44.91 0.12 1.98 16 13 H 0.06 1.16 7.80 -2.39 -0.02 1.14 16 14 C -0.14 -2.56 9.41 71.98 0.68 -1.88 16 15 N -0.69 -21.71 5.93 -495.57 -2.94 -24.65 16 16 C 0.06 2.02 5.97 85.56 0.51 2.53 16 17 C 0.45 21.53 7.82 87.66 0.69 22.21 16 18 O -0.62 -36.29 15.78 -3.08 -0.05 -36.34 16 19 N -0.59 -29.35 5.09 -306.99 -1.56 -30.92 16 20 C -0.33 -20.19 10.16 84.04 0.85 -19.33 16 21 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 22 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 23 N -0.93 -57.96 13.96 21.66 0.30 -57.66 16 24 Si 0.97 40.22 27.74 68.60 1.90 42.12 16 25 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.23 -8.25 6.52 99.48 0.65 -7.60 16 28 C 0.04 0.69 11.26 83.72 0.94 1.63 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.10 -0.10 8.14 -2.39 -0.02 -0.11 16 31 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.25 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.42 8.53 8.19 -92.71 -0.76 7.77 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.33 6.43 -2.39 -0.02 1.32 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 1.05 7.45 -2.39 -0.02 1.03 16 43 H 0.34 12.09 6.17 -89.70 -0.55 11.54 16 44 H 0.07 2.05 8.05 -2.39 -0.02 2.03 16 45 H 0.12 3.23 7.43 -2.39 -0.02 3.21 16 46 H 0.39 16.05 5.76 -92.71 -0.53 15.52 16 47 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 48 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -92.52 403.52 0.00 -92.52 By element: Atomic # 1 Polarization: 45.95 SS G_CDS: -0.91 Total: 45.05 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 9.43 Total: 29.50 kcal Atomic # 7 Polarization: -140.84 SS G_CDS: -10.31 Total: -151.15 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -0.12 Total: -58.03 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.90 Total: 42.12 kcal Total: -92.52 0.00 -92.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.004 kcal (2) G-P(sol) polarization free energy of solvation -92.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds