Wall clock time and date at job start Tue Mar 31 2020 20:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46793 * 2 1 4 4 C 1.35851 * 126.13641 * 269.97315 * 3 2 1 5 5 N 1.30166 * 109.00315 * 179.76767 * 4 3 2 6 6 C 1.35764 * 108.86976 * 0.41220 * 5 4 3 7 7 C 1.47322 * 126.23881 * 179.85754 * 6 5 4 8 8 O 1.21623 * 120.00050 * 179.68718 * 7 6 5 9 9 N 1.34777 * 119.99921 * 359.41345 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27801 * 9 7 6 11 11 C 1.52990 * 109.47304 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47532 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46417 * 304.99805 * 12 11 10 14 14 C 1.53000 * 109.47526 * 184.99957 * 12 11 10 15 15 N 1.46901 * 109.47222 * 64.99310 * 12 11 10 16 16 C 1.46894 * 111.00357 * 205.00649 * 15 12 11 17 17 C 1.50699 * 109.47188 * 180.02562 * 16 15 12 18 18 O 1.21292 * 120.00072 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99798 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99775 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00221 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00025 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00059 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99784 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46568 * 90.00748 * 24 22 20 26 26 H 1.48499 * 109.46995 * 210.00244 * 24 22 20 27 27 H 1.48495 * 109.47409 * 330.00974 * 24 22 20 28 28 C 1.35376 * 126.13648 * 90.00362 * 3 2 1 29 29 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47653 * 300.00080 * 1 2 3 31 31 H 1.09000 * 109.47465 * 59.99920 * 1 2 3 32 32 H 1.09001 * 109.47088 * 240.00399 * 2 1 3 33 33 H 1.08995 * 109.47027 * 119.99922 * 2 1 3 34 34 H 1.08002 * 125.49397 * 0.02817 * 4 3 2 35 35 H 0.97000 * 119.99736 * 0.27073 * 9 7 6 36 36 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 37 37 H 1.08997 * 109.47029 * 59.99499 * 10 9 7 38 38 H 1.09006 * 109.47037 * 299.99466 * 11 10 9 39 39 H 1.09002 * 109.47663 * 59.99467 * 11 10 9 40 40 H 1.08998 * 109.46974 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46724 * 299.99728 * 14 12 11 42 42 H 1.08999 * 109.47080 * 59.99580 * 14 12 11 43 43 H 1.00906 * 110.99903 * 328.96564 * 15 12 11 44 44 H 1.09002 * 109.46765 * 299.99902 * 16 15 12 45 45 H 1.08994 * 109.47070 * 60.00148 * 16 15 12 46 46 H 0.96997 * 120.00471 * 0.02562 * 19 17 16 47 47 H 0.96997 * 119.99531 * 179.97438 * 23 22 20 48 48 H 1.08001 * 126.56093 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2857 2.1364 -1.0972 5 7 2.6954 3.3109 -0.7137 6 6 2.7140 3.3480 0.6433 7 6 3.1184 4.4928 1.4778 8 8 3.0860 4.4030 2.6902 9 7 3.5296 5.6377 0.8976 10 6 3.9376 6.7740 1.7273 11 6 4.3565 7.9382 0.8275 12 6 4.7819 9.1253 1.6940 13 1 3.9774 9.3775 2.3848 14 6 5.0815 10.3291 0.7985 15 7 5.9870 8.7690 2.4550 16 6 6.0934 9.5735 3.6794 17 6 7.3391 9.1813 4.4314 18 8 8.0663 8.3163 3.9910 19 7 7.6449 9.7917 5.5935 20 6 8.7779 9.4345 6.2779 21 1 9.4255 8.6643 5.8857 22 6 9.0930 10.0634 7.4762 23 7 10.1792 9.7214 8.1320 24 14 7.9732 11.3961 8.1542 25 1 6.9476 10.7804 9.0342 26 1 8.7782 12.3679 8.9371 27 1 7.3038 12.0992 7.0306 28 6 2.2844 2.1339 1.0933 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1723 1.8155 -2.1221 35 1 3.5556 5.7092 -0.0695 36 1 3.1027 7.0827 2.3564 37 1 4.7779 6.4811 2.3567 38 1 5.1916 7.6292 0.1987 39 1 3.5165 8.2312 0.1977 40 1 5.3850 11.1746 1.4159 41 1 5.8860 10.0768 0.1077 42 1 4.1873 10.5934 0.2340 43 1 6.0019 7.7828 2.6678 44 1 6.1457 10.6301 3.4165 45 1 5.2195 9.3979 4.3066 46 1 7.0632 10.4832 5.9459 47 1 10.3993 10.1607 8.9683 48 1 2.1770 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267152158.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:05 Heat of formation + Delta-G solvation = -12.928772 kcal Electronic energy + Delta-G solvation = -27864.639980 eV Core-core repulsion = 23762.606885 eV Total energy + Delta-G solvation = -4102.033095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56983 -39.45863 -38.53849 -37.16220 -35.52610 -34.70534 -33.86694 -31.72819 -31.40689 -30.85430 -30.16705 -28.79380 -26.53080 -24.93391 -24.02812 -23.51079 -22.43072 -21.31103 -20.66519 -20.00576 -19.30071 -18.35612 -18.17223 -16.54712 -16.43793 -16.14944 -15.85990 -15.62958 -15.33417 -15.06359 -14.90549 -14.57657 -14.41995 -14.20571 -13.88653 -13.85626 -13.57512 -13.26359 -13.09341 -13.01221 -12.78200 -12.58430 -12.17978 -12.10982 -12.07478 -11.90232 -11.63393 -11.27723 -11.23382 -11.11275 -10.76815 -10.66944 -10.53624 -10.21862 -10.11829 -9.90973 -9.50247 -9.20133 -8.90459 -8.48850 -8.12452 -8.05606 -6.24537 -3.75520 1.29827 2.08670 2.15217 3.08309 3.12322 3.14132 3.19953 3.41233 3.82659 3.96035 4.06900 4.15141 4.18727 4.23752 4.30514 4.51438 4.67536 4.77735 4.89468 4.90991 4.93431 4.95349 5.05573 5.16269 5.28377 5.35288 5.40608 5.47394 5.58439 5.63698 5.69589 5.78845 5.87637 5.92040 5.97742 6.02682 6.06033 6.10475 6.35922 6.36980 6.58799 7.21602 7.28605 7.58642 7.65172 7.67998 8.18801 8.21931 8.67192 9.02159 9.49730 9.90830 10.88748 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.001825 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.402252 B =15340.466600 C =16440.314401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.185 3.815 5 N -0.464 5.464 6 C -0.062 4.062 7 C 0.601 3.399 8 O -0.542 6.542 9 N -0.714 5.714 10 C 0.113 3.887 11 C -0.132 4.132 12 C 0.087 3.913 13 H 0.045 0.955 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.047 3.953 17 C 0.451 3.549 18 O -0.564 6.564 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.036 3.964 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.211 0.789 35 H 0.408 0.592 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.351 0.649 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.067 -14.786 -20.401 34.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.098 4.098 5 N -0.183 5.183 6 C -0.191 4.191 7 C 0.387 3.613 8 O -0.419 6.419 9 N -0.365 5.365 10 C -0.010 4.010 11 C -0.171 4.171 12 C -0.024 4.024 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.086 4.086 17 C 0.237 3.763 18 O -0.445 6.445 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.103 4.103 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.227 0.773 35 H 0.243 0.757 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.173 0.827 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.203 0.797 47 H 0.083 0.917 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.838 -14.455 -20.508 33.928 hybrid contribution -1.668 0.035 1.280 2.103 sum -24.506 -14.420 -19.228 34.325 Atomic orbital electron populations 1.22184 0.93692 1.03536 1.03521 1.21986 0.95920 0.79227 1.05288 1.45550 1.48370 1.13224 1.06825 1.25156 1.03625 0.87420 0.93645 1.70591 1.17958 1.19381 1.10364 1.20564 1.12435 0.95615 0.90510 1.16903 0.76712 0.81316 0.86370 1.90833 1.54968 1.82738 1.13408 1.45714 1.66779 1.13077 1.10936 1.21483 1.00364 0.85357 0.93825 1.21977 1.02192 0.94225 0.98658 1.21459 0.91119 0.94748 0.95069 0.93729 1.21786 1.01256 0.97147 0.99515 1.60193 1.38101 1.10373 1.21466 1.21758 0.96650 0.99199 0.90968 1.19737 0.88249 0.85716 0.82624 1.90566 1.52296 1.33635 1.68020 1.42204 1.24111 1.35943 1.20907 1.19441 0.99939 1.21047 1.02784 0.86300 1.25035 0.96661 0.98122 0.96400 1.69627 1.24167 1.42238 1.16276 0.86668 0.80941 0.82098 0.79666 1.19679 1.20229 1.19472 1.22621 1.02527 0.91809 0.93339 0.90202 0.91602 0.91611 0.88309 0.88539 0.77301 0.75658 0.91458 0.90867 0.89904 0.90550 0.92521 0.91757 0.92836 0.82706 0.89482 0.93704 0.79717 0.91694 0.79532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.32 10.24 37.16 0.38 0.06 16 2 C 0.10 0.21 6.84 -4.04 -0.03 0.18 16 3 N -0.46 -2.78 2.73 -118.36 -0.32 -3.10 16 4 C 0.19 1.26 12.55 -89.91 -1.13 0.13 16 5 N -0.46 -4.79 11.01 -11.03 -0.12 -4.92 16 6 C -0.06 -0.73 6.98 -83.09 -0.58 -1.31 16 7 C 0.60 8.40 7.81 -12.57 -0.10 8.30 16 8 O -0.54 -9.34 16.88 5.26 0.09 -9.26 16 9 N -0.71 -8.52 5.55 -61.42 -0.34 -8.86 16 10 C 0.11 1.37 5.50 -4.05 -0.02 1.35 16 11 C -0.13 -1.35 4.92 -26.73 -0.13 -1.48 16 12 C 0.09 1.04 2.65 -67.71 -0.18 0.86 16 13 H 0.04 0.51 7.80 -51.93 -0.40 0.11 16 14 C -0.14 -1.52 9.42 37.16 0.35 -1.17 16 15 N -0.67 -10.76 5.93 -107.99 -0.64 -11.40 16 16 C 0.05 0.82 5.97 -4.98 -0.03 0.79 16 17 C 0.45 10.70 7.82 -10.99 -0.09 10.62 16 18 O -0.56 -15.77 15.78 5.55 0.09 -15.68 16 19 N -0.59 -14.65 5.09 -10.96 -0.06 -14.71 16 20 C -0.30 -8.86 10.16 -14.93 -0.15 -9.02 16 21 H 0.12 3.96 7.39 -52.49 -0.39 3.57 16 22 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 23 N -0.88 -26.43 13.96 55.50 0.77 -25.65 16 24 Si 0.88 19.95 27.74 -169.99 -4.71 15.23 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 28 C 0.04 0.33 11.26 -16.64 -0.19 0.14 16 29 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 34 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.41 4.17 8.19 -40.82 -0.33 3.84 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.35 6.05 6.17 -39.29 -0.24 5.81 16 44 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 45 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 46 H 0.37 8.05 5.76 -40.82 -0.24 7.82 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -38.33 403.52 -8.52 -46.85 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -7.37 Total: 14.91 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -1.99 Total: 10.50 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -0.71 Total: -68.64 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.18 Total: -24.94 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.71 Total: 15.23 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.33 -8.52 -46.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152158.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.924 kcal (2) G-P(sol) polarization free energy of solvation -38.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds