Wall clock time and date at job start Tue Mar 31 2020 20:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46793 * 2 1 4 4 C 1.35851 * 126.13641 * 269.97315 * 3 2 1 5 5 N 1.30166 * 109.00315 * 179.76767 * 4 3 2 6 6 C 1.35764 * 108.86976 * 0.41220 * 5 4 3 7 7 C 1.47322 * 126.23881 * 179.85754 * 6 5 4 8 8 O 1.21623 * 120.00050 * 179.68718 * 7 6 5 9 9 N 1.34777 * 119.99921 * 359.41345 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27801 * 9 7 6 11 11 C 1.52990 * 109.47304 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47532 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46417 * 304.99805 * 12 11 10 14 14 C 1.53000 * 109.47526 * 184.99957 * 12 11 10 15 15 N 1.46901 * 109.47222 * 64.99310 * 12 11 10 16 16 C 1.46894 * 111.00357 * 205.00649 * 15 12 11 17 17 C 1.50699 * 109.47188 * 180.02562 * 16 15 12 18 18 O 1.21292 * 120.00072 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99798 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99775 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00221 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00025 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00059 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99784 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46568 * 90.00748 * 24 22 20 26 26 H 1.48499 * 109.46995 * 210.00244 * 24 22 20 27 27 H 1.48495 * 109.47409 * 330.00974 * 24 22 20 28 28 C 1.35376 * 126.13648 * 90.00362 * 3 2 1 29 29 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47653 * 300.00080 * 1 2 3 31 31 H 1.09000 * 109.47465 * 59.99920 * 1 2 3 32 32 H 1.09001 * 109.47088 * 240.00399 * 2 1 3 33 33 H 1.08995 * 109.47027 * 119.99922 * 2 1 3 34 34 H 1.08002 * 125.49397 * 0.02817 * 4 3 2 35 35 H 0.97000 * 119.99736 * 0.27073 * 9 7 6 36 36 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 37 37 H 1.08997 * 109.47029 * 59.99499 * 10 9 7 38 38 H 1.09006 * 109.47037 * 299.99466 * 11 10 9 39 39 H 1.09002 * 109.47663 * 59.99467 * 11 10 9 40 40 H 1.08998 * 109.46974 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46724 * 299.99728 * 14 12 11 42 42 H 1.08999 * 109.47080 * 59.99580 * 14 12 11 43 43 H 1.00906 * 110.99903 * 328.96564 * 15 12 11 44 44 H 1.09002 * 109.46765 * 299.99902 * 16 15 12 45 45 H 1.08994 * 109.47070 * 60.00148 * 16 15 12 46 46 H 0.96997 * 120.00471 * 0.02562 * 19 17 16 47 47 H 0.96997 * 119.99531 * 179.97438 * 23 22 20 48 48 H 1.08001 * 126.56093 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2857 2.1364 -1.0972 5 7 2.6954 3.3109 -0.7137 6 6 2.7140 3.3480 0.6433 7 6 3.1184 4.4928 1.4778 8 8 3.0860 4.4030 2.6902 9 7 3.5296 5.6377 0.8976 10 6 3.9376 6.7740 1.7273 11 6 4.3565 7.9382 0.8275 12 6 4.7819 9.1253 1.6940 13 1 3.9774 9.3775 2.3848 14 6 5.0815 10.3291 0.7985 15 7 5.9870 8.7690 2.4550 16 6 6.0934 9.5735 3.6794 17 6 7.3391 9.1813 4.4314 18 8 8.0663 8.3163 3.9910 19 7 7.6449 9.7917 5.5935 20 6 8.7779 9.4345 6.2779 21 1 9.4255 8.6643 5.8857 22 6 9.0930 10.0634 7.4762 23 7 10.1792 9.7214 8.1320 24 14 7.9732 11.3961 8.1542 25 1 6.9476 10.7804 9.0342 26 1 8.7782 12.3679 8.9371 27 1 7.3038 12.0992 7.0306 28 6 2.2844 2.1339 1.0933 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1723 1.8155 -2.1221 35 1 3.5556 5.7092 -0.0695 36 1 3.1027 7.0827 2.3564 37 1 4.7779 6.4811 2.3567 38 1 5.1916 7.6292 0.1987 39 1 3.5165 8.2312 0.1977 40 1 5.3850 11.1746 1.4159 41 1 5.8860 10.0768 0.1077 42 1 4.1873 10.5934 0.2340 43 1 6.0019 7.7828 2.6678 44 1 6.1457 10.6301 3.4165 45 1 5.2195 9.3979 4.3066 46 1 7.0632 10.4832 5.9459 47 1 10.3993 10.1607 8.9683 48 1 2.1770 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267152158.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:04 Heat of formation + Delta-G solvation = -43.459389 kcal Electronic energy + Delta-G solvation = -27865.963887 eV Core-core repulsion = 23762.606885 eV Total energy + Delta-G solvation = -4103.357002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.17564 -40.55407 -40.26992 -38.39806 -36.10525 -35.96448 -35.65056 -33.77292 -32.68900 -31.30619 -30.92831 -29.61680 -28.20477 -25.88870 -25.23422 -24.34076 -23.30983 -21.82802 -21.63020 -21.32775 -20.89452 -20.26881 -18.89957 -17.85779 -17.34156 -17.17403 -16.97545 -16.84284 -16.53466 -16.43082 -15.76774 -15.60411 -15.45195 -15.00682 -14.96057 -14.81490 -14.64674 -14.57353 -14.40596 -14.26227 -13.92704 -13.51697 -13.39026 -13.16414 -12.98260 -12.90647 -12.58330 -12.42435 -12.27091 -12.22680 -12.17884 -11.96919 -11.76705 -11.52200 -11.40917 -11.09292 -10.77452 -10.44099 -10.25620 -10.21052 -9.63065 -9.31415 -8.41881 -6.02898 0.52850 1.29818 1.35331 1.42984 1.44286 1.67647 1.94840 2.22771 2.26139 2.50048 2.73208 3.14346 3.38828 3.41586 3.75250 3.79958 3.88474 3.95888 4.09302 4.10111 4.16695 4.17499 4.40698 4.41581 4.43361 4.47699 4.52613 4.59651 4.66907 4.72616 4.84131 4.97118 5.02742 5.04789 5.10358 5.20248 5.22878 5.39312 5.41139 5.49309 5.53220 5.91139 6.09943 6.10724 6.38504 6.45592 6.59328 6.84379 6.87187 7.20031 7.38751 7.95768 8.75915 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.001825 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.402252 B =15340.466600 C =16440.314401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.092 3.908 3 N -0.449 5.449 4 C 0.198 3.802 5 N -0.495 5.495 6 C -0.099 4.099 7 C 0.593 3.407 8 O -0.588 6.588 9 N -0.705 5.705 10 C 0.117 3.883 11 C -0.118 4.118 12 C 0.086 3.914 13 H 0.060 0.940 14 C -0.136 4.136 15 N -0.685 5.685 16 C 0.061 3.939 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.590 5.590 20 C -0.331 4.331 21 H 0.053 0.947 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.231 1.231 28 C 0.038 3.962 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.252 0.748 35 H 0.417 0.583 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.340 0.660 44 H 0.115 0.885 45 H 0.074 0.926 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.634 -13.771 -22.154 38.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.130 5.130 4 C -0.086 4.086 5 N -0.214 5.214 6 C -0.227 4.227 7 C 0.381 3.619 8 O -0.469 6.469 9 N -0.355 5.355 10 C -0.007 4.007 11 C -0.156 4.156 12 C -0.024 4.024 13 H 0.078 0.922 14 C -0.194 4.194 15 N -0.320 5.320 16 C -0.071 4.071 17 C 0.235 3.765 18 O -0.500 6.500 19 N -0.232 5.232 20 C -0.460 4.460 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.154 1.154 28 C -0.103 4.103 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.123 0.877 34 H 0.268 0.732 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.161 0.839 44 H 0.133 0.867 45 H 0.092 0.908 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -26.434 -13.434 -22.324 37.116 hybrid contribution -0.517 -0.481 1.710 1.850 sum -26.952 -13.914 -20.614 36.673 Atomic orbital electron populations 1.22161 0.93349 1.04459 1.02562 1.22349 0.96101 0.77139 1.07187 1.45803 1.47179 1.14319 1.05677 1.25984 1.01095 0.86352 0.95218 1.70519 1.19729 1.21565 1.09562 1.20400 1.15126 0.95829 0.91334 1.17368 0.76115 0.82267 0.86178 1.90786 1.57201 1.83648 1.15287 1.45666 1.65889 1.12654 1.11339 1.21414 0.99142 0.86076 0.94098 1.21892 1.02979 0.92717 0.98054 1.21617 0.89809 0.95749 0.95202 0.92232 1.21782 1.02248 0.96172 0.99181 1.60248 1.40978 1.09621 1.21137 1.21693 0.93606 1.00620 0.91230 1.21036 0.89416 0.84042 0.82011 1.90541 1.54537 1.35727 1.69173 1.42023 1.23209 1.36797 1.21192 1.19019 1.01451 1.21099 1.04424 0.92841 1.26141 0.98502 1.00931 0.95827 1.69810 1.26645 1.44015 1.16998 0.85346 0.78447 0.77803 0.79807 1.18230 1.19785 1.15386 1.22747 1.01612 0.91528 0.94452 0.88334 0.93349 0.91748 0.85427 0.87720 0.73197 0.74608 0.91620 0.93818 0.90426 0.87550 0.92891 0.92870 0.89980 0.83927 0.86664 0.90810 0.77444 0.91117 0.79055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.26 10.24 71.98 0.74 0.47 16 2 C 0.09 0.16 6.84 86.38 0.59 0.75 16 3 N -0.45 -4.68 2.73 -528.39 -1.44 -6.12 16 4 C 0.20 2.27 12.55 180.10 2.26 4.53 16 5 N -0.49 -9.88 11.01 -188.81 -2.08 -11.95 16 6 C -0.10 -2.37 6.98 40.50 0.28 -2.08 16 7 C 0.59 17.43 7.81 86.63 0.68 18.11 16 8 O -0.59 -21.60 16.88 -4.10 -0.07 -21.67 16 9 N -0.70 -17.25 5.55 -466.49 -2.59 -19.84 16 10 C 0.12 2.86 5.50 86.38 0.48 3.33 16 11 C -0.12 -2.24 4.92 30.59 0.15 -2.09 16 12 C 0.09 1.86 2.65 44.92 0.12 1.98 16 13 H 0.06 1.16 7.80 -2.39 -0.02 1.14 16 14 C -0.14 -2.57 9.42 71.98 0.68 -1.89 16 15 N -0.69 -21.68 5.93 -495.58 -2.94 -24.62 16 16 C 0.06 2.01 5.97 85.56 0.51 2.52 16 17 C 0.45 21.51 7.82 87.66 0.69 22.20 16 18 O -0.62 -36.25 15.78 -3.07 -0.05 -36.30 16 19 N -0.59 -29.33 5.09 -306.98 -1.56 -30.89 16 20 C -0.33 -20.21 10.16 84.04 0.85 -19.36 16 21 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 22 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 23 N -0.93 -57.93 13.96 21.66 0.30 -57.63 16 24 Si 0.97 40.18 27.74 68.60 1.90 42.09 16 25 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.23 -8.10 6.52 99.48 0.65 -7.45 16 28 C 0.04 0.69 11.26 83.72 0.94 1.63 16 29 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.13 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.25 0.40 8.06 -2.91 -0.02 0.38 16 35 H 0.42 8.52 8.19 -92.71 -0.76 7.76 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.34 6.43 -2.39 -0.02 1.32 16 38 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.05 7.45 -2.39 -0.02 1.03 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.34 12.07 6.17 -89.69 -0.55 11.51 16 44 H 0.12 3.22 7.44 -2.39 -0.02 3.20 16 45 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 46 H 0.39 16.04 5.76 -92.71 -0.53 15.50 16 47 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 48 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -92.36 403.52 0.00 -92.36 By element: Atomic # 1 Polarization: 45.81 SS G_CDS: -0.91 Total: 44.91 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: 9.43 Total: 29.68 kcal Atomic # 7 Polarization: -140.75 SS G_CDS: -10.31 Total: -151.06 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -0.12 Total: -57.97 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.90 Total: 42.09 kcal Total: -92.36 0.00 -92.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152158.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.898 kcal (2) G-P(sol) polarization free energy of solvation -92.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds