Wall clock time and date at job start Tue Mar 31 2020 19:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 N 1.46902 * 109.47411 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99926 * 66.04687 * 10 9 8 12 12 C 1.46900 * 110.99813 * 190.00182 * 10 9 8 13 13 C 1.50703 * 109.46627 * 169.99699 * 12 10 9 14 14 O 1.21284 * 120.00321 * 0.02562 * 13 12 10 15 15 N 1.34786 * 119.99514 * 180.02562 * 13 12 10 16 16 C 1.37097 * 119.99388 * 180.02562 * 15 13 12 17 17 H 1.07994 * 120.00671 * 359.97438 * 16 15 13 18 18 C 1.38954 * 119.99595 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00121 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00049 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46835 * 90.00417 * 20 18 16 22 22 H 1.48493 * 109.47286 * 210.00576 * 20 18 16 23 23 H 1.48506 * 109.47329 * 330.00675 * 20 18 16 24 24 N 1.46493 * 109.47203 * 119.99910 * 2 1 3 25 25 C 1.36876 * 126.40236 * 239.71325 * 24 2 1 26 26 C 1.34670 * 106.82229 * 179.84126 * 25 24 2 27 27 N 1.34128 * 108.01732 * 0.42692 * 26 25 24 28 28 C 1.30503 * 109.25564 * 359.72957 * 27 26 25 29 29 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 30 30 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 35 35 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 36 36 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 37 37 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 38 38 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 39 39 H 1.08999 * 109.47080 * 60.00072 * 11 10 9 40 40 H 1.08997 * 109.46676 * 180.02562 * 11 10 9 41 41 H 1.08998 * 109.47085 * 300.00111 * 11 10 9 42 42 H 1.08998 * 109.47297 * 289.99615 * 12 10 9 43 43 H 1.08997 * 109.47246 * 50.00512 * 12 10 9 44 44 H 0.96997 * 119.99855 * 359.97438 * 15 13 12 45 45 H 0.96997 * 120.00520 * 179.97438 * 19 18 16 46 46 H 1.08006 * 126.59052 * 359.97438 * 25 24 2 47 47 H 1.07993 * 125.99217 * 180.11550 * 26 25 24 48 48 H 1.08003 * 125.64595 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1216 -0.3473 -6.1417 10 7 1.7386 0.4148 -7.3377 11 6 2.4230 1.7141 -7.3754 12 6 2.0038 -0.3555 -8.5601 13 6 1.3798 0.3442 -9.7400 14 8 0.7743 1.3826 -9.5786 15 7 1.4947 -0.1841 -10.9747 16 6 0.9275 0.4528 -12.0481 17 1 0.3883 1.3774 -11.9044 18 6 1.0455 -0.0921 -13.3209 19 7 0.5014 0.5180 -14.3498 20 14 1.9774 -1.6918 -13.5694 21 1 1.0405 -2.8362 -13.4366 22 1 2.5860 -1.7048 -14.9239 23 1 3.0467 -1.8060 -12.5452 24 7 2.0183 -0.6906 1.1961 25 6 2.8129 -0.1570 2.1746 26 6 3.0184 -1.1295 3.0832 27 7 2.3747 -2.2298 2.6660 28 6 1.7735 -1.9743 1.5363 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7993 -1.2057 34 1 2.4935 -1.2124 -3.7906 35 1 0.5212 0.4500 -4.9405 36 1 2.0421 1.3695 -4.8424 37 1 3.2076 -0.4266 -6.0941 38 1 1.6863 -1.3454 -6.1917 39 1 3.5014 1.5565 -7.3919 40 1 2.1211 2.2578 -8.2706 41 1 2.1538 2.2923 -6.4915 42 1 3.0801 -0.4357 -8.7127 43 1 1.5755 -1.3529 -8.4611 44 1 1.9793 -1.0143 -11.1038 45 1 0.5840 0.1379 -15.2384 46 1 3.1990 0.8510 2.2120 47 1 3.6034 -1.0407 3.9866 48 1 1.1789 -2.6739 0.9675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267219551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:19 Heat of formation + Delta-G solvation = 7.688988 kcal Electronic energy + Delta-G solvation = -27877.335777 eV Core-core repulsion = 23776.196735 eV Total energy + Delta-G solvation = -4101.139042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.49875 -40.31462 -38.90384 -37.15098 -36.10674 -34.87499 -33.92253 -31.73178 -31.56369 -30.17385 -29.55525 -28.37847 -27.74858 -25.43968 -24.13727 -23.41155 -21.75967 -21.42115 -21.17009 -20.29355 -19.41360 -18.32621 -18.10609 -17.02909 -16.60730 -16.33527 -16.03434 -15.68218 -15.47086 -15.21087 -14.98047 -14.64405 -14.43309 -14.17905 -14.08450 -13.87322 -13.82010 -13.43327 -13.42209 -13.17494 -13.12620 -12.49692 -12.39824 -12.14458 -12.08989 -11.96404 -11.82307 -11.60978 -11.45599 -11.21848 -11.10030 -10.64187 -10.38405 -10.30784 -10.03763 -10.01551 -9.58823 -9.43835 -8.90017 -8.67164 -8.23097 -8.09197 -6.34949 -3.86614 1.66345 2.12840 2.17424 2.77950 2.82741 2.97845 3.02758 3.11441 3.67648 3.83666 3.89409 4.06209 4.11318 4.25669 4.32997 4.49161 4.55220 4.65014 4.72851 4.78413 4.87153 4.89204 5.05558 5.15580 5.19395 5.21805 5.30136 5.35892 5.40042 5.51448 5.64891 5.66782 5.72525 5.73664 5.81606 5.88849 5.90479 6.01944 6.36064 6.42243 6.78322 6.95973 7.03688 7.14282 7.53813 7.70780 7.73673 8.10237 8.55688 8.91132 9.37960 9.78321 10.78102 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032959 B = 0.001503 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.338684 B =18618.778337 C =19026.446165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.149 3.851 3 H 0.110 0.890 4 C -0.153 4.153 5 C 0.519 3.481 6 O -0.533 6.533 7 N -0.726 5.726 8 C 0.120 3.880 9 C 0.044 3.956 10 N -0.515 5.515 11 C 0.017 3.983 12 C 0.044 3.956 13 C 0.451 3.549 14 O -0.558 6.558 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.880 5.880 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 N -0.454 5.454 25 C -0.055 4.055 26 C -0.032 4.032 27 N -0.497 5.497 28 C 0.181 3.819 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.401 0.599 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.370 0.630 45 H 0.274 0.726 46 H 0.173 0.827 47 H 0.168 0.832 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.630 -6.648 28.788 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.046 3.954 3 H 0.128 0.872 4 C -0.194 4.194 5 C 0.304 3.696 6 O -0.410 6.410 7 N -0.378 5.378 8 C -0.003 4.003 9 C -0.085 4.085 10 N -0.239 5.239 11 C -0.131 4.131 12 C -0.087 4.087 13 C 0.237 3.763 14 O -0.440 6.440 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.138 0.862 18 C -0.161 4.161 19 N -0.520 5.520 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 N -0.137 5.137 25 C -0.188 4.188 26 C -0.180 4.180 27 N -0.215 5.215 28 C -0.102 4.102 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.235 0.765 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.035 0.965 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.190 0.810 47 H 0.186 0.814 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.134 -5.753 29.027 30.221 hybrid contribution 1.965 -1.161 -0.999 2.491 sum 8.098 -6.914 28.029 29.983 Atomic orbital electron populations 1.22310 0.92147 1.03165 1.04934 1.21153 0.96410 0.96884 0.80990 0.87200 1.22014 1.03974 1.01013 0.92396 1.20159 0.79479 0.85678 0.84281 1.90739 1.39502 1.24261 1.86453 1.45920 1.57809 1.27963 1.06059 1.21385 1.01716 0.95098 0.82106 1.22256 0.98148 0.97843 0.90246 1.61434 1.58642 1.03802 1.00030 1.22650 0.94537 0.91028 1.04887 1.21903 0.98952 0.97656 0.90200 1.19590 0.85846 0.87565 0.83298 1.90535 1.44782 1.24346 1.84303 1.42206 1.50228 1.23554 1.06974 1.19430 1.31286 1.08706 0.84005 0.86232 1.25037 0.97651 0.98175 0.95234 1.69616 1.43760 1.39163 0.99478 0.86675 0.80147 0.83915 0.78638 1.19593 1.20174 1.19586 1.45787 1.37856 1.11495 1.18608 1.22801 1.02185 1.01436 0.92346 1.22317 1.04713 0.89637 1.01355 1.70316 1.12409 1.28245 1.10480 1.24897 1.03899 0.85378 0.96002 0.88224 0.92060 0.91711 0.87800 0.87959 0.76534 0.89963 0.90934 0.94509 0.90210 0.96506 0.88245 0.91696 0.93211 0.89167 0.79738 0.91579 0.80967 0.81439 0.78249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 8.98 37.16 0.33 -0.70 16 2 C 0.15 0.84 2.70 -67.94 -0.18 0.66 16 3 H 0.11 0.68 7.90 -51.92 -0.41 0.27 16 4 C -0.15 -0.68 5.17 -27.88 -0.14 -0.82 16 5 C 0.52 3.92 7.55 -10.98 -0.08 3.83 16 6 O -0.53 -6.05 13.97 5.55 0.08 -5.97 16 7 N -0.73 -4.85 5.56 -60.29 -0.33 -5.18 16 8 C 0.12 1.16 5.60 -4.04 -0.02 1.14 16 9 C 0.04 0.43 5.07 -3.82 -0.02 0.41 16 10 N -0.51 -7.48 4.50 -244.37 -1.10 -8.58 16 11 C 0.02 0.24 8.96 60.06 0.54 0.78 16 12 C 0.04 0.69 5.45 -4.97 -0.03 0.66 16 13 C 0.45 9.83 7.48 -10.98 -0.08 9.75 16 14 O -0.56 -14.42 13.91 5.55 0.08 -14.34 16 15 N -0.59 -13.59 5.09 -10.96 -0.06 -13.64 16 16 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 17 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -25.32 13.96 55.50 0.77 -24.55 16 20 Si 0.88 18.86 27.74 -169.99 -4.71 14.14 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 24 N -0.45 -2.97 2.62 -111.46 -0.29 -3.26 16 25 C -0.05 -0.37 11.54 -16.56 -0.19 -0.56 16 26 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 27 N -0.50 -4.97 11.25 -14.66 -0.16 -5.13 16 28 C 0.18 1.34 11.65 -90.37 -1.05 0.29 16 29 H 0.10 0.79 5.95 -51.93 -0.31 0.48 16 30 H 0.06 0.31 7.95 -51.93 -0.41 -0.10 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.28 8.08 -51.93 -0.42 -0.14 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 1.51 8.47 -40.82 -0.35 1.17 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.79 6.55 -51.93 -0.34 0.45 16 37 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 38 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.10 1.84 5.82 -51.93 -0.30 1.54 16 41 H 0.06 0.85 6.47 -51.93 -0.34 0.51 16 42 H 0.05 0.68 8.12 -51.93 -0.42 0.25 16 43 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 44 H 0.37 7.42 5.76 -40.82 -0.24 7.18 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.17 0.74 8.06 -52.48 -0.42 0.31 16 47 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 48 H 0.20 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -35.91 394.49 -8.47 -44.39 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.29 Total: 8.80 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.39 Total: 7.38 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -1.17 Total: -60.34 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.15 Total: -20.31 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.14 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.91 -8.47 -44.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267219551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.076 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds