Wall clock time and date at job start Tue Mar 31 2020 19:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 N 1.46902 * 109.47411 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99926 * 66.04687 * 10 9 8 12 12 C 1.46900 * 110.99813 * 190.00182 * 10 9 8 13 13 C 1.50703 * 109.46627 * 169.99699 * 12 10 9 14 14 O 1.21284 * 120.00321 * 0.02562 * 13 12 10 15 15 N 1.34786 * 119.99514 * 180.02562 * 13 12 10 16 16 C 1.37097 * 119.99388 * 180.02562 * 15 13 12 17 17 H 1.07994 * 120.00671 * 359.97438 * 16 15 13 18 18 C 1.38954 * 119.99595 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00121 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00049 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46835 * 90.00417 * 20 18 16 22 22 H 1.48493 * 109.47286 * 210.00576 * 20 18 16 23 23 H 1.48506 * 109.47329 * 330.00675 * 20 18 16 24 24 N 1.46493 * 109.47203 * 119.99910 * 2 1 3 25 25 C 1.36876 * 126.40236 * 239.71325 * 24 2 1 26 26 C 1.34670 * 106.82229 * 179.84126 * 25 24 2 27 27 N 1.34128 * 108.01732 * 0.42692 * 26 25 24 28 28 C 1.30503 * 109.25564 * 359.72957 * 27 26 25 29 29 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 30 30 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 35 35 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 36 36 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 37 37 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 38 38 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 39 39 H 1.08999 * 109.47080 * 60.00072 * 11 10 9 40 40 H 1.08997 * 109.46676 * 180.02562 * 11 10 9 41 41 H 1.08998 * 109.47085 * 300.00111 * 11 10 9 42 42 H 1.08998 * 109.47297 * 289.99615 * 12 10 9 43 43 H 1.08997 * 109.47246 * 50.00512 * 12 10 9 44 44 H 0.96997 * 119.99855 * 359.97438 * 15 13 12 45 45 H 0.96997 * 120.00520 * 179.97438 * 19 18 16 46 46 H 1.08006 * 126.59052 * 359.97438 * 25 24 2 47 47 H 1.07993 * 125.99217 * 180.11550 * 26 25 24 48 48 H 1.08003 * 125.64595 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1216 -0.3473 -6.1417 10 7 1.7386 0.4148 -7.3377 11 6 2.4230 1.7141 -7.3754 12 6 2.0038 -0.3555 -8.5601 13 6 1.3798 0.3442 -9.7400 14 8 0.7743 1.3826 -9.5786 15 7 1.4947 -0.1841 -10.9747 16 6 0.9275 0.4528 -12.0481 17 1 0.3883 1.3774 -11.9044 18 6 1.0455 -0.0921 -13.3209 19 7 0.5014 0.5180 -14.3498 20 14 1.9774 -1.6918 -13.5694 21 1 1.0405 -2.8362 -13.4366 22 1 2.5860 -1.7048 -14.9239 23 1 3.0467 -1.8060 -12.5452 24 7 2.0183 -0.6906 1.1961 25 6 2.8129 -0.1570 2.1746 26 6 3.0184 -1.1295 3.0832 27 7 2.3747 -2.2298 2.6660 28 6 1.7735 -1.9743 1.5363 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7993 -1.2057 34 1 2.4935 -1.2124 -3.7906 35 1 0.5212 0.4500 -4.9405 36 1 2.0421 1.3695 -4.8424 37 1 3.2076 -0.4266 -6.0941 38 1 1.6863 -1.3454 -6.1917 39 1 3.5014 1.5565 -7.3919 40 1 2.1211 2.2578 -8.2706 41 1 2.1538 2.2923 -6.4915 42 1 3.0801 -0.4357 -8.7127 43 1 1.5755 -1.3529 -8.4611 44 1 1.9793 -1.0143 -11.1038 45 1 0.5840 0.1379 -15.2384 46 1 3.1990 0.8510 2.2120 47 1 3.6034 -1.0407 3.9866 48 1 1.1789 -2.6739 0.9675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267219551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:18 Heat of formation + Delta-G solvation = -20.581685 kcal Electronic energy + Delta-G solvation = -27878.561685 eV Core-core repulsion = 23776.196735 eV Total energy + Delta-G solvation = -4102.364950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.01310 -40.95948 -40.46222 -38.29500 -36.70627 -36.00911 -35.49520 -33.74199 -32.12227 -30.96276 -30.10998 -29.40356 -28.55454 -26.93621 -25.27826 -24.17596 -22.32780 -22.26956 -21.79124 -21.23583 -20.83423 -20.16526 -18.60738 -17.86283 -17.52093 -17.19306 -17.02232 -16.77117 -16.45077 -16.20281 -16.04852 -15.57585 -15.42143 -15.15651 -14.92447 -14.79654 -14.70974 -14.48748 -14.30393 -14.21131 -14.04304 -13.81097 -13.69908 -13.10433 -12.98382 -12.86371 -12.56976 -12.55341 -12.50728 -12.39370 -12.25111 -12.08645 -11.96443 -11.45796 -11.02245 -10.89295 -10.58898 -10.36607 -10.21898 -10.10278 -9.42356 -9.24019 -8.39657 -6.00612 1.16375 1.30979 1.37344 1.46014 1.57261 1.64770 1.98520 2.16873 2.24761 2.26323 2.78519 3.16339 3.29238 3.41531 3.67923 3.79804 3.89190 3.90376 4.05259 4.08470 4.13766 4.17570 4.36280 4.44617 4.45792 4.48679 4.51299 4.61783 4.63063 4.63790 4.73936 4.79540 4.88600 4.89687 4.98144 5.18019 5.22143 5.36956 5.43025 5.54568 5.85113 5.88161 5.99812 6.16070 6.30291 6.50994 6.61795 6.90849 7.17905 7.22108 7.42217 8.00459 8.78134 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032959 B = 0.001503 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.338684 B =18618.778337 C =19026.446165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.103 0.897 4 C -0.140 4.140 5 C 0.518 3.482 6 O -0.576 6.576 7 N -0.712 5.712 8 C 0.128 3.872 9 C 0.052 3.948 10 N -0.543 5.543 11 C 0.023 3.977 12 C 0.057 3.943 13 C 0.449 3.551 14 O -0.608 6.608 15 N -0.592 5.592 16 C -0.328 4.328 17 H 0.053 0.947 18 C -0.016 4.016 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.257 1.257 22 H -0.278 1.278 23 H -0.228 1.228 24 N -0.451 5.451 25 C -0.055 4.055 26 C -0.056 4.056 27 N -0.538 5.538 28 C 0.179 3.821 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.419 0.581 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.194 0.806 47 H 0.178 0.822 48 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.214 -10.472 30.314 33.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.121 0.879 4 C -0.180 4.180 5 C 0.304 3.696 6 O -0.456 6.456 7 N -0.365 5.365 8 C 0.004 3.996 9 C -0.076 4.076 10 N -0.268 5.268 11 C -0.125 4.125 12 C -0.073 4.073 13 C 0.236 3.764 14 O -0.492 6.492 15 N -0.234 5.234 16 C -0.457 4.457 17 H 0.071 0.929 18 C -0.214 4.214 19 N -0.577 5.577 20 Si 0.786 3.214 21 H -0.181 1.181 22 H -0.203 1.203 23 H -0.152 1.152 24 N -0.134 5.134 25 C -0.188 4.188 26 C -0.203 4.203 27 N -0.257 5.257 28 C -0.103 4.103 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.257 0.743 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.144 0.856 44 H 0.226 0.774 45 H 0.088 0.912 46 H 0.211 0.789 47 H 0.195 0.805 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 8.752 -9.609 30.594 33.240 hybrid contribution 1.063 0.186 -1.384 1.755 sum 9.815 -9.423 29.210 32.224 Atomic orbital electron populations 1.22229 0.92647 1.03644 1.03580 1.21100 0.95935 0.96727 0.81284 0.87938 1.21953 1.05041 1.01281 0.89774 1.20686 0.78510 0.85204 0.85164 1.90739 1.41458 1.26339 1.87057 1.45725 1.57551 1.28288 1.04928 1.21094 1.00027 0.95016 0.83498 1.22271 0.99855 0.97846 0.87593 1.61303 1.59931 1.04193 1.01378 1.22464 0.95746 0.91351 1.02907 1.21833 1.00265 0.97904 0.87347 1.20988 0.84081 0.86779 0.84508 1.90530 1.46553 1.26787 1.85306 1.42025 1.50794 1.24255 1.06326 1.18992 1.32554 1.07676 0.86514 0.92866 1.26133 0.98355 1.03062 0.93898 1.69810 1.45672 1.41910 1.00345 0.85350 0.79400 0.77210 0.79437 1.18135 1.20284 1.15159 1.45811 1.37572 1.11321 1.18648 1.23167 1.01655 1.02088 0.91876 1.22627 1.05424 0.89849 1.02354 1.70286 1.13897 1.29492 1.12003 1.25406 1.03404 0.85926 0.95565 0.90104 0.90660 0.92478 0.85190 0.86257 0.74340 0.92579 0.92548 0.91862 0.87905 0.94303 0.92969 0.90913 0.89942 0.85587 0.77442 0.91219 0.78884 0.80496 0.75658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.98 71.98 0.65 -1.15 16 2 C 0.15 1.42 2.70 44.99 0.12 1.54 16 3 H 0.10 1.14 7.90 -2.38 -0.02 1.12 16 4 C -0.14 -0.79 5.17 29.85 0.15 -0.63 16 5 C 0.52 6.67 7.55 87.66 0.66 7.33 16 6 O -0.58 -12.78 13.97 -3.04 -0.04 -12.83 16 7 N -0.71 -7.28 5.56 -463.06 -2.57 -9.86 16 8 C 0.13 2.21 5.60 86.38 0.48 2.69 16 9 C 0.05 0.80 5.07 86.30 0.44 1.24 16 10 N -0.54 -14.51 4.50 -927.06 -4.17 -18.68 16 11 C 0.02 0.66 8.96 127.69 1.14 1.81 16 12 C 0.06 1.57 5.45 85.56 0.47 2.03 16 13 C 0.45 19.42 7.48 87.66 0.66 20.07 16 14 O -0.61 -32.91 13.91 -3.04 -0.04 -32.95 16 15 N -0.59 -26.92 5.09 -306.98 -1.56 -28.48 16 16 C -0.33 -18.93 10.16 84.04 0.85 -18.07 16 17 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 18 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 19 N -0.94 -56.07 13.96 21.66 0.30 -55.76 16 20 Si 0.97 37.61 27.74 68.60 1.90 39.51 16 21 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 22 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.23 -7.29 6.52 99.48 0.65 -6.64 16 24 N -0.45 -4.93 2.62 -506.55 -1.33 -6.26 16 25 C -0.05 -0.66 11.54 83.09 0.96 0.30 16 26 C -0.06 -0.87 11.87 83.52 0.99 0.13 16 27 N -0.54 -10.13 11.25 -200.31 -2.25 -12.39 16 28 C 0.18 2.27 11.65 180.26 2.10 4.37 16 29 H 0.08 1.26 5.95 -2.39 -0.01 1.25 16 30 H 0.07 0.59 7.95 -2.39 -0.02 0.58 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.13 0.11 8.08 -2.38 -0.02 0.09 16 33 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.42 1.23 8.47 -92.71 -0.79 0.45 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.16 6.55 -2.39 -0.02 1.15 16 37 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 38 H 0.10 1.17 7.93 -2.38 -0.02 1.15 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.05 2.00 5.82 -2.39 -0.01 1.98 16 41 H 0.07 1.90 6.47 -2.39 -0.02 1.89 16 42 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 43 H 0.13 2.61 7.93 -2.39 -0.02 2.59 16 44 H 0.39 14.37 5.76 -92.71 -0.53 13.84 16 45 H 0.28 15.23 8.31 -92.71 -0.77 14.45 16 46 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 47 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 48 H 0.23 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -87.52 394.49 -0.01 -87.53 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.39 Total: 28.91 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 10.14 Total: 21.24 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -11.58 Total: -131.42 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.08 Total: -45.78 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 1.90 Total: 39.51 kcal Total: -87.52 -0.01 -87.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267219551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.952 kcal (2) G-P(sol) polarization free energy of solvation -87.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds