Wall clock time and date at job start Tue Mar 31 2020 19:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 O 1.21276 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99616 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99916 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47030 * 179.97438 * 8 7 5 10 10 N 1.46905 * 109.46858 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99763 * 66.05069 * 10 9 8 12 12 C 1.46905 * 110.99617 * 189.99995 * 10 9 8 13 13 C 1.50702 * 109.46679 * 170.00381 * 12 10 9 14 14 O 1.21292 * 120.00342 * 359.97438 * 13 12 10 15 15 N 1.34773 * 119.99868 * 179.97438 * 13 12 10 16 16 C 1.37094 * 120.00188 * 179.97438 * 15 13 12 17 17 H 1.08007 * 120.00090 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00258 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00166 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47146 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47115 * 119.99894 * 20 18 16 23 23 H 1.48498 * 109.47038 * 239.99798 * 20 18 16 24 24 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 25 25 C 1.36885 * 126.39286 * 120.00096 * 24 2 1 26 26 C 1.34665 * 106.81493 * 179.97438 * 25 24 2 27 27 N 1.34129 * 108.02445 * 0.02562 * 26 25 24 28 28 C 1.30498 * 109.25189 * 359.97438 * 27 26 25 29 29 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 30 30 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 31 31 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 33 33 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 34 34 H 0.96999 * 120.00048 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.46527 * 299.99751 * 8 7 5 36 36 H 1.08996 * 109.46980 * 59.99074 * 8 7 5 37 37 H 1.08997 * 109.47473 * 299.99941 * 9 8 7 38 38 H 1.09001 * 109.47143 * 59.99974 * 9 8 7 39 39 H 1.08998 * 109.47233 * 59.99697 * 11 10 9 40 40 H 1.08999 * 109.46784 * 180.02562 * 11 10 9 41 41 H 1.09004 * 109.46955 * 299.99336 * 11 10 9 42 42 H 1.09000 * 109.47056 * 290.00216 * 12 10 9 43 43 H 1.08993 * 109.47196 * 50.00097 * 12 10 9 44 44 H 0.97010 * 120.00281 * 359.97438 * 15 13 12 45 45 H 0.96998 * 120.00653 * 179.97438 * 19 18 16 46 46 H 1.07999 * 126.59054 * 359.73997 * 25 24 2 47 47 H 1.08008 * 125.98738 * 179.97438 * 26 25 24 48 48 H 1.08006 * 125.64605 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 1.5980 0.3655 4.8933 9 6 2.1078 -0.3558 6.1425 10 7 1.7201 0.4036 7.3388 11 6 0.2610 0.4085 7.5092 12 6 2.3882 -0.1235 8.5363 13 6 2.1653 0.8183 9.6914 14 8 1.5144 1.8294 9.5326 15 7 2.6892 0.5372 10.9009 16 6 2.4869 1.3942 11.9516 17 1 1.9073 2.2946 11.8103 18 6 3.0274 1.1046 13.1984 19 7 3.7322 0.0089 13.3707 20 14 2.7511 2.2721 14.6303 21 1 1.9289 3.4233 14.1788 22 1 2.0433 1.5570 15.7225 23 1 4.0610 2.7636 15.1280 24 7 2.0184 -0.6907 -1.1961 25 6 2.8085 -0.1554 -2.1774 26 6 3.0192 -1.1298 -3.0827 27 7 2.3748 -2.2299 -2.6660 28 6 1.7733 -1.9743 -1.5365 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 2.4891 -1.2152 3.7908 35 1 2.0327 1.3641 4.8469 36 1 0.5118 0.4439 4.9372 37 1 1.6729 -1.3541 6.1886 38 1 3.1941 -0.4344 6.0987 39 1 -0.0960 -0.6159 7.6145 40 1 0.0014 0.9778 8.4017 41 1 -0.2050 0.8679 6.6374 42 1 1.9761 -1.1025 8.7810 43 1 3.4570 -0.2169 8.3446 44 1 3.2094 -0.2717 11.0280 45 1 4.1099 -0.1931 14.2409 46 1 3.1868 0.8553 -2.2195 47 1 3.6039 -1.0408 -3.9865 48 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267219557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:22 Heat of formation + Delta-G solvation = 0.267883 kcal Electronic energy + Delta-G solvation = -27820.525854 eV Core-core repulsion = 23719.065009 eV Total energy + Delta-G solvation = -4101.460845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47782 -40.27902 -38.73849 -37.03816 -36.06784 -34.81865 -33.86220 -31.54681 -31.29190 -30.10475 -29.52490 -28.27189 -27.64654 -25.37809 -24.19971 -23.45355 -21.73856 -21.37892 -21.15013 -20.26623 -19.22538 -18.08039 -17.89878 -17.00620 -16.52441 -16.33290 -15.97846 -15.60642 -15.54154 -15.05098 -14.71011 -14.63264 -14.35424 -14.26546 -14.00016 -13.86646 -13.67923 -13.51176 -13.45782 -13.25326 -13.07474 -12.38640 -12.19777 -12.09005 -11.93213 -11.81990 -11.56567 -11.47531 -11.34474 -11.14488 -10.99980 -10.36912 -10.35542 -10.28797 -10.25745 -10.01396 -9.52913 -9.39614 -8.87926 -8.54452 -8.04299 -7.95193 -6.45681 -3.86502 1.68566 2.16240 2.19990 2.81965 2.84968 3.13584 3.24674 3.31809 3.85016 3.86211 3.96068 4.13770 4.20653 4.30667 4.34688 4.51428 4.58528 4.74427 4.80515 4.88837 4.90419 5.04844 5.07671 5.20108 5.20947 5.28859 5.31153 5.37804 5.55192 5.60642 5.67905 5.73374 5.79096 5.84865 5.91893 5.92560 6.06124 6.21944 6.38178 6.48404 6.80390 7.02341 7.13489 7.24077 7.51928 7.72770 7.77238 8.02443 8.57381 9.14401 9.49936 10.01507 10.72065 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039035 B = 0.001436 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.133547 B =19497.202510 C =19775.214023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.149 3.851 3 H 0.110 0.890 4 C -0.153 4.153 5 C 0.519 3.481 6 O -0.534 6.534 7 N -0.725 5.725 8 C 0.121 3.879 9 C 0.044 3.956 10 N -0.515 5.515 11 C 0.018 3.982 12 C 0.047 3.953 13 C 0.443 3.557 14 O -0.577 6.577 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 N -0.454 5.454 25 C -0.054 4.054 26 C -0.032 4.032 27 N -0.497 5.497 28 C 0.180 3.820 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.401 0.599 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.173 0.827 47 H 0.168 0.832 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.658 -6.619 -26.074 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 H 0.128 0.872 4 C -0.194 4.194 5 C 0.304 3.696 6 O -0.411 6.411 7 N -0.377 5.377 8 C -0.003 4.003 9 C -0.085 4.085 10 N -0.239 5.239 11 C -0.130 4.130 12 C -0.084 4.084 13 C 0.228 3.772 14 O -0.461 6.461 15 N -0.200 5.200 16 C -0.428 4.428 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 N -0.137 5.137 25 C -0.187 4.187 26 C -0.180 4.180 27 N -0.215 5.215 28 C -0.102 4.102 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.235 0.765 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.191 0.809 47 H 0.186 0.814 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.383 -5.435 -26.414 27.072 hybrid contribution 0.411 -0.567 1.498 1.653 sum -1.972 -6.002 -24.916 25.704 Atomic orbital electron populations 1.22306 0.92228 1.03093 1.04891 1.21156 0.96345 0.96941 0.81011 0.87152 1.22013 1.04068 1.00930 0.92385 1.20153 0.79508 0.85647 0.84290 1.90732 1.39608 1.24244 1.86468 1.45929 1.57795 1.27950 1.06030 1.21388 1.00744 0.95957 0.82180 1.22254 1.01054 0.94866 0.90347 1.61453 1.08622 1.52675 1.01167 1.22632 0.86390 0.99505 1.04461 1.21870 0.99764 0.96312 0.90466 1.19691 0.85354 0.88426 0.83723 1.90495 1.43673 1.28464 1.83428 1.41868 1.47160 1.23203 1.07795 1.19757 1.31337 1.04368 0.87377 0.87813 1.25259 0.96507 0.97193 0.98944 1.69613 1.34945 1.24725 1.25028 0.85802 0.78126 0.80000 0.80437 1.19189 1.20775 1.20733 1.45785 1.38012 1.11441 1.18502 1.22807 1.02272 1.01360 0.92277 1.22316 1.04704 0.89591 1.01418 1.70313 1.12364 1.28288 1.10503 1.24884 1.03914 0.85436 0.95970 0.88275 0.91726 0.92113 0.87867 0.87878 0.76511 0.90057 0.90952 0.94520 0.90259 0.96590 0.88311 0.91880 0.93320 0.89314 0.77507 0.91910 0.80945 0.81436 0.78279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 8.98 37.16 0.33 -0.70 16 2 C 0.15 0.87 2.70 -67.92 -0.18 0.69 16 3 H 0.11 0.72 7.89 -51.93 -0.41 0.31 16 4 C -0.15 -0.73 5.17 -27.88 -0.14 -0.87 16 5 C 0.52 4.10 7.55 -10.98 -0.08 4.02 16 6 O -0.53 -6.22 13.97 5.56 0.08 -6.14 16 7 N -0.73 -5.19 5.56 -60.29 -0.33 -5.53 16 8 C 0.12 1.23 5.60 -4.04 -0.02 1.21 16 9 C 0.04 0.46 5.07 -3.82 -0.02 0.44 16 10 N -0.51 -7.90 4.50 -244.37 -1.10 -9.00 16 11 C 0.02 0.27 8.96 60.07 0.54 0.81 16 12 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 13 C 0.44 10.08 7.47 -10.99 -0.08 10.00 16 14 O -0.58 -15.11 13.91 5.55 0.08 -15.04 16 15 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 16 16 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 17 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 20 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 N -0.45 -3.07 2.62 -111.45 -0.29 -3.36 16 25 C -0.05 -0.38 11.54 -16.56 -0.19 -0.57 16 26 C -0.03 -0.27 11.87 -17.81 -0.21 -0.49 16 27 N -0.50 -5.06 11.25 -14.66 -0.16 -5.23 16 28 C 0.18 1.37 11.65 -90.38 -1.05 0.31 16 29 H 0.10 0.79 5.95 -51.93 -0.31 0.48 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.31 7.95 -51.93 -0.41 -0.11 16 32 H 0.10 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.40 1.73 8.47 -40.82 -0.35 1.38 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.81 6.55 -51.93 -0.34 0.47 16 37 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 38 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.10 1.88 5.83 -51.93 -0.30 1.57 16 41 H 0.06 0.85 6.47 -51.93 -0.34 0.52 16 42 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 44 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 47 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 48 H 0.20 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 397.62 15.07 5.99 5.99 Total: -1.00 -34.61 397.62 -8.82 -43.43 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.34 Total: 8.66 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -1.39 Total: 7.80 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -1.23 Total: -60.38 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.15 Total: -21.18 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.61 -8.82 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267219557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.698 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds