Wall clock time and date at job start Tue Mar 31 2020 20:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47057 * 2 1 4 4 C 1.53005 * 109.47015 * 239.99827 * 2 1 3 5 5 N 1.46907 * 109.46815 * 65.00097 * 4 2 1 6 6 C 1.46900 * 110.99579 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46715 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00549 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99663 * 179.97438 * 7 6 5 10 10 C 1.37091 * 119.99594 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00461 * 0.02562 * 10 9 7 12 12 C 1.38959 * 119.99638 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99898 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00089 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.47129 * 89.99792 * 14 12 10 16 16 H 1.48495 * 109.47072 * 209.99731 * 14 12 10 17 17 H 1.48501 * 109.47210 * 330.00193 * 14 12 10 18 18 C 1.52992 * 109.46952 * 120.00131 * 2 1 3 19 19 N 1.46506 * 109.47161 * 294.99531 * 18 2 1 20 20 C 1.34773 * 119.99968 * 179.97438 * 19 18 2 21 21 O 1.21283 * 120.00360 * 359.73034 * 20 19 18 22 22 C 1.50706 * 120.00081 * 180.02562 * 20 19 18 23 23 C 1.50696 * 109.47259 * 179.72770 * 22 20 19 24 24 C 1.39872 * 126.04010 * 90.02720 * 23 22 20 25 25 N 1.30837 * 108.20001 * 179.97438 * 24 23 22 26 26 N 1.40082 * 108.20971 * 359.97438 * 25 24 23 27 27 C 1.46499 * 126.03943 * 180.02562 * 26 25 24 28 28 C 1.34954 * 107.92339 * 359.76006 * 26 25 24 29 29 H 1.09000 * 109.46867 * 300.00269 * 1 2 3 30 30 H 1.09001 * 109.47183 * 59.99865 * 1 2 3 31 31 H 1.09000 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.46971 * 184.99761 * 4 2 1 33 33 H 1.08997 * 109.47003 * 305.00420 * 4 2 1 34 34 H 1.00890 * 110.99839 * 56.04531 * 5 4 2 35 35 H 1.09003 * 109.47066 * 299.99486 * 6 5 4 36 36 H 1.08995 * 109.47717 * 59.99773 * 6 5 4 37 37 H 0.96996 * 120.00206 * 0.02562 * 9 7 6 38 38 H 0.96998 * 120.00118 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.47116 * 175.00167 * 18 2 1 40 40 H 1.08998 * 109.47794 * 55.00078 * 18 2 1 41 41 H 0.96998 * 119.99507 * 0.02562 * 19 18 2 42 42 H 1.09001 * 109.46564 * 299.73030 * 22 20 19 43 43 H 1.08998 * 109.47012 * 59.72084 * 22 20 19 44 44 H 1.07998 * 125.89837 * 359.97438 * 24 23 22 45 45 H 1.08998 * 109.47152 * 89.97766 * 27 26 25 46 46 H 1.09003 * 109.46913 * 209.96964 * 27 26 25 47 47 H 1.08996 * 109.47157 * 329.97389 * 27 26 25 48 48 H 1.08001 * 126.12637 * 180.23963 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6514 0.0374 -2.4457 6 6 2.1247 -0.6272 -3.6672 7 6 1.7076 0.1780 -4.8709 8 8 1.0777 1.2042 -4.7255 9 7 2.0347 -0.2423 -6.1090 10 6 1.6549 0.4899 -7.2040 11 1 1.0939 1.4037 -7.0746 12 6 1.9916 0.0563 -8.4806 13 7 1.6280 0.7584 -9.5302 14 14 2.9612 -1.5245 -8.7046 15 1 2.0217 -2.6674 -8.8336 16 1 3.7922 -1.4259 -9.9313 17 1 3.8404 -1.7371 -7.5268 18 6 2.0400 -0.7212 1.2492 19 7 1.6525 0.0354 2.4424 20 6 1.9956 -0.4136 3.6659 21 8 2.6209 -1.4465 3.7795 22 6 1.5965 0.3645 4.8933 23 6 2.0925 -0.3497 6.1241 24 6 3.3321 -0.1582 6.7432 25 7 3.3986 -0.9542 7.7795 26 7 2.2015 -1.6779 7.8531 27 6 1.8611 -2.6801 8.8660 28 6 1.4148 -1.2846 6.8296 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7198 -1.2952 34 1 1.9881 0.9872 -2.3967 35 1 3.2116 -0.7051 -3.6406 36 1 1.6904 -1.6249 -3.7297 37 1 2.5382 -1.0632 -6.2254 38 1 1.8627 0.4555 -10.4213 39 1 3.1263 -0.7995 1.2056 40 1 1.6054 -1.7198 1.2952 41 1 1.1484 0.8591 2.3517 42 1 2.0351 1.3614 4.8501 43 1 0.5104 0.4470 4.9340 44 1 4.1014 0.5280 6.4214 45 1 1.3687 -2.1933 9.7078 46 1 1.1902 -3.4217 8.4322 47 1 2.7708 -3.1710 9.2115 48 1 0.4231 -1.6523 6.6109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267980026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:16 Heat of formation + Delta-G solvation = 5.289539 kcal Electronic energy + Delta-G solvation = -27304.135881 eV Core-core repulsion = 23202.892791 eV Total energy + Delta-G solvation = -4101.243090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.58125 -39.79694 -38.54742 -37.26380 -34.92941 -34.01068 -33.91061 -32.58393 -31.89889 -31.62304 -28.89063 -27.57276 -26.99399 -25.84191 -24.61321 -22.99013 -21.46745 -21.21397 -20.77821 -20.11473 -19.34104 -18.32368 -17.38739 -17.15670 -16.38208 -16.01244 -15.74598 -15.69822 -15.55540 -15.01220 -14.78768 -14.64254 -14.45739 -13.97035 -13.76349 -13.58670 -13.54371 -13.20351 -13.16721 -12.98121 -12.84879 -12.65375 -12.56085 -12.18858 -12.07446 -11.97651 -11.79425 -11.23913 -11.09880 -11.07837 -10.93711 -10.91332 -10.59678 -10.10098 -9.97807 -9.74895 -9.57494 -9.28076 -8.73767 -8.59600 -8.19723 -8.13817 -6.31464 -3.82854 1.54377 2.16386 2.37531 2.46366 3.02495 3.06999 3.09086 3.15194 3.73969 4.07769 4.10648 4.11708 4.43613 4.55653 4.66729 4.68352 4.68941 4.72579 4.82426 4.86557 4.94049 4.95235 5.03717 5.21850 5.24406 5.30481 5.41872 5.42881 5.57304 5.62364 5.62792 5.71396 5.79388 5.81509 5.85842 5.93866 6.07591 6.23411 6.28456 6.36420 6.63043 7.07205 7.27391 7.35089 7.55699 7.58333 8.04135 8.14220 8.59535 8.94678 9.42274 9.82489 10.81676 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037117 B = 0.001371 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.194070 B =20418.124307 C =20751.193414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.591 5.591 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.125 3.875 19 N -0.730 5.730 20 C 0.509 3.491 21 O -0.534 6.534 22 C -0.060 4.060 23 C -0.221 4.221 24 C 0.063 3.937 25 N -0.300 5.300 26 N -0.377 5.377 27 C 0.102 3.898 28 C 0.069 3.931 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.350 0.650 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.371 0.629 38 H 0.273 0.727 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.401 0.599 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.181 0.819 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -5.424 34.234 34.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.236 3.764 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.001 3.999 19 N -0.383 5.383 20 C 0.295 3.705 21 O -0.410 6.410 22 C -0.101 4.101 23 C -0.233 4.233 24 C -0.123 4.123 25 N -0.121 5.121 26 N -0.159 5.159 27 C -0.039 4.039 28 C -0.078 4.078 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.169 0.831 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.198 0.802 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.170 -6.262 35.242 35.795 hybrid contribution 0.995 -0.520 -1.212 1.652 sum 0.825 -6.781 34.031 34.710 Atomic orbital electron populations 1.21758 0.93701 1.02119 1.02147 1.21340 0.97635 0.99981 0.92931 0.90455 1.21905 0.97358 0.97959 0.89236 1.60025 1.64170 1.05923 0.99703 1.21701 0.97838 0.98699 0.90243 1.19713 0.85206 0.87872 0.83631 1.90559 1.42817 1.25890 1.85434 1.42211 1.50966 1.23839 1.06012 1.19436 1.33551 1.07784 0.82667 0.86280 1.25035 0.97842 0.98071 0.95155 1.69620 1.45731 1.38423 0.98368 0.86671 0.80434 0.83717 0.78554 1.19594 1.20191 1.19537 1.21356 0.99898 0.95396 0.83272 1.46047 1.58366 1.28068 1.05851 1.20780 0.79342 0.85944 0.84430 1.90720 1.39425 1.24217 1.86631 1.19887 1.02443 0.98859 0.88887 1.19392 0.96788 1.05864 1.01288 1.23723 0.97164 0.98358 0.93053 1.77349 1.02833 1.09835 1.22036 1.48398 1.12250 1.32303 1.22923 1.21852 1.02590 0.89493 0.89996 1.22249 0.97937 0.97394 0.90184 0.93599 0.90440 0.92867 0.95259 0.90756 0.83058 0.93764 0.89469 0.79681 0.91615 0.91663 0.91414 0.76453 0.88053 0.88364 0.80208 0.90768 0.89467 0.89270 0.81126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.95 37.16 0.33 -0.94 16 2 C -0.10 -0.87 2.57 -90.62 -0.23 -1.10 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.07 0.70 5.07 -3.82 -0.02 0.68 16 5 N -0.67 -9.61 5.58 -115.06 -0.64 -10.25 16 6 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 7 C 0.45 10.07 7.82 -10.98 -0.09 9.98 16 8 O -0.57 -14.94 15.78 5.55 0.09 -14.85 16 9 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 10 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 14 Si 0.88 19.32 27.74 -169.99 -4.71 14.60 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 18 C 0.12 1.09 5.06 -4.04 -0.02 1.06 16 19 N -0.73 -5.30 5.28 -60.29 -0.32 -5.62 16 20 C 0.51 4.57 7.82 -10.98 -0.09 4.49 16 21 O -0.53 -7.32 16.03 5.56 0.09 -7.23 16 22 C -0.06 -0.34 6.19 -29.03 -0.18 -0.52 16 23 C -0.22 -1.84 4.59 -105.05 -0.48 -2.32 16 24 C 0.06 0.60 11.96 -17.36 -0.21 0.39 16 25 N -0.30 -3.25 12.58 30.62 0.39 -2.86 16 26 N -0.38 -3.20 4.01 -68.16 -0.27 -3.47 16 27 C 0.10 0.43 11.47 59.85 0.69 1.12 16 28 C 0.07 0.53 11.40 -17.22 -0.20 0.33 16 29 H 0.04 0.33 7.18 -51.93 -0.37 -0.05 16 30 H 0.08 0.90 7.75 -51.93 -0.40 0.49 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.35 5.24 8.43 -39.30 -0.33 4.90 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.40 1.92 7.65 -40.82 -0.31 1.60 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 405.96 15.07 6.12 6.12 Total: -1.00 -38.16 405.96 -6.87 -45.03 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.55 Total: 11.30 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.77 Total: 6.18 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.13 Total: -61.16 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.18 Total: -22.08 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.16 -6.87 -45.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267980026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.320 kcal (2) G-P(sol) polarization free energy of solvation -38.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds