Wall clock time and date at job start Tue Mar 31 2020 20:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47057 * 2 1 4 4 C 1.53005 * 109.47015 * 239.99827 * 2 1 3 5 5 N 1.46907 * 109.46815 * 65.00097 * 4 2 1 6 6 C 1.46900 * 110.99579 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46715 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00549 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99663 * 179.97438 * 7 6 5 10 10 C 1.37091 * 119.99594 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00461 * 0.02562 * 10 9 7 12 12 C 1.38959 * 119.99638 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99898 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00089 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.47129 * 89.99792 * 14 12 10 16 16 H 1.48495 * 109.47072 * 209.99731 * 14 12 10 17 17 H 1.48501 * 109.47210 * 330.00193 * 14 12 10 18 18 C 1.52992 * 109.46952 * 120.00131 * 2 1 3 19 19 N 1.46506 * 109.47161 * 294.99531 * 18 2 1 20 20 C 1.34773 * 119.99968 * 179.97438 * 19 18 2 21 21 O 1.21283 * 120.00360 * 359.73034 * 20 19 18 22 22 C 1.50706 * 120.00081 * 180.02562 * 20 19 18 23 23 C 1.50696 * 109.47259 * 179.72770 * 22 20 19 24 24 C 1.39872 * 126.04010 * 90.02720 * 23 22 20 25 25 N 1.30837 * 108.20001 * 179.97438 * 24 23 22 26 26 N 1.40082 * 108.20971 * 359.97438 * 25 24 23 27 27 C 1.46499 * 126.03943 * 180.02562 * 26 25 24 28 28 C 1.34954 * 107.92339 * 359.76006 * 26 25 24 29 29 H 1.09000 * 109.46867 * 300.00269 * 1 2 3 30 30 H 1.09001 * 109.47183 * 59.99865 * 1 2 3 31 31 H 1.09000 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.46971 * 184.99761 * 4 2 1 33 33 H 1.08997 * 109.47003 * 305.00420 * 4 2 1 34 34 H 1.00890 * 110.99839 * 56.04531 * 5 4 2 35 35 H 1.09003 * 109.47066 * 299.99486 * 6 5 4 36 36 H 1.08995 * 109.47717 * 59.99773 * 6 5 4 37 37 H 0.96996 * 120.00206 * 0.02562 * 9 7 6 38 38 H 0.96998 * 120.00118 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.47116 * 175.00167 * 18 2 1 40 40 H 1.08998 * 109.47794 * 55.00078 * 18 2 1 41 41 H 0.96998 * 119.99507 * 0.02562 * 19 18 2 42 42 H 1.09001 * 109.46564 * 299.73030 * 22 20 19 43 43 H 1.08998 * 109.47012 * 59.72084 * 22 20 19 44 44 H 1.07998 * 125.89837 * 359.97438 * 24 23 22 45 45 H 1.08998 * 109.47152 * 89.97766 * 27 26 25 46 46 H 1.09003 * 109.46913 * 209.96964 * 27 26 25 47 47 H 1.08996 * 109.47157 * 329.97389 * 27 26 25 48 48 H 1.08001 * 126.12637 * 180.23963 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6514 0.0374 -2.4457 6 6 2.1247 -0.6272 -3.6672 7 6 1.7076 0.1780 -4.8709 8 8 1.0777 1.2042 -4.7255 9 7 2.0347 -0.2423 -6.1090 10 6 1.6549 0.4899 -7.2040 11 1 1.0939 1.4037 -7.0746 12 6 1.9916 0.0563 -8.4806 13 7 1.6280 0.7584 -9.5302 14 14 2.9612 -1.5245 -8.7046 15 1 2.0217 -2.6674 -8.8336 16 1 3.7922 -1.4259 -9.9313 17 1 3.8404 -1.7371 -7.5268 18 6 2.0400 -0.7212 1.2492 19 7 1.6525 0.0354 2.4424 20 6 1.9956 -0.4136 3.6659 21 8 2.6209 -1.4465 3.7795 22 6 1.5965 0.3645 4.8933 23 6 2.0925 -0.3497 6.1241 24 6 3.3321 -0.1582 6.7432 25 7 3.3986 -0.9542 7.7795 26 7 2.2015 -1.6779 7.8531 27 6 1.8611 -2.6801 8.8660 28 6 1.4148 -1.2846 6.8296 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7198 -1.2952 34 1 1.9881 0.9872 -2.3967 35 1 3.2116 -0.7051 -3.6406 36 1 1.6904 -1.6249 -3.7297 37 1 2.5382 -1.0632 -6.2254 38 1 1.8627 0.4555 -10.4213 39 1 3.1263 -0.7995 1.2056 40 1 1.6054 -1.7198 1.2952 41 1 1.1484 0.8591 2.3517 42 1 2.0351 1.3614 4.8501 43 1 0.5104 0.4470 4.9340 44 1 4.1014 0.5280 6.4214 45 1 1.3687 -2.1933 9.7078 46 1 1.1902 -3.4217 8.4322 47 1 2.7708 -3.1710 9.2115 48 1 0.4231 -1.6523 6.6109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267980026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:15 Heat of formation + Delta-G solvation = -26.175759 kcal Electronic energy + Delta-G solvation = -27305.500319 eV Core-core repulsion = 23202.892791 eV Total energy + Delta-G solvation = -4102.607528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14101 -40.52410 -40.26080 -38.22216 -36.17372 -35.61556 -34.51789 -33.76022 -33.36183 -32.51072 -29.45298 -28.86802 -27.63158 -26.73248 -25.95578 -24.18822 -22.02544 -21.85604 -21.58122 -21.22036 -20.74035 -20.16565 -18.02542 -17.83268 -17.63362 -17.02899 -16.87189 -16.67384 -16.36457 -16.22154 -15.74561 -15.59607 -15.30966 -15.19046 -14.94106 -14.51827 -14.41068 -14.35598 -14.17553 -13.95476 -13.71821 -13.42352 -13.40337 -13.24417 -13.14373 -12.97188 -12.85652 -12.61097 -12.40442 -11.98862 -11.95128 -11.88484 -11.66054 -11.51901 -11.50274 -10.85560 -10.41739 -10.34191 -10.23620 -9.97127 -9.29189 -9.27688 -8.40505 -6.01195 0.98840 1.31064 1.36346 1.45033 1.70467 1.78600 1.81635 1.97192 2.23669 2.45135 2.80847 3.16119 3.45749 3.67259 3.91915 3.97371 4.01452 4.09865 4.13056 4.20131 4.31644 4.39255 4.44017 4.45626 4.53283 4.56193 4.58007 4.68178 4.68598 4.82069 4.86471 4.89794 4.91910 5.03164 5.14655 5.21038 5.34538 5.53679 5.55056 5.60880 5.72197 5.91930 6.06589 6.17577 6.42730 6.60920 6.71464 6.75868 6.89217 7.41155 7.42877 7.97612 8.77130 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037117 B = 0.001371 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.194070 B =20418.124307 C =20751.193414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.083 0.917 4 C 0.066 3.934 5 N -0.680 5.680 6 C 0.062 3.938 7 C 0.449 3.551 8 O -0.613 6.613 9 N -0.592 5.592 10 C -0.329 4.329 11 H 0.056 0.944 12 C -0.014 4.014 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.232 1.232 18 C 0.133 3.867 19 N -0.719 5.719 20 C 0.509 3.491 21 O -0.586 6.586 22 C -0.051 4.051 23 C -0.238 4.238 24 C 0.047 3.953 25 N -0.344 5.344 26 N -0.384 5.384 27 C 0.093 3.907 28 C 0.065 3.935 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.345 0.655 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.415 0.585 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.192 0.808 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.084 0.916 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -7.525 35.854 36.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.101 0.899 4 C -0.063 4.063 5 N -0.313 5.313 6 C -0.071 4.071 7 C 0.237 3.763 8 O -0.497 6.497 9 N -0.234 5.234 10 C -0.459 4.459 11 H 0.074 0.926 12 C -0.212 4.212 13 N -0.575 5.575 14 Si 0.784 3.216 15 H -0.182 1.182 16 H -0.201 1.201 17 H -0.155 1.155 18 C 0.008 3.992 19 N -0.372 5.372 20 C 0.297 3.703 21 O -0.466 6.466 22 C -0.092 4.092 23 C -0.250 4.250 24 C -0.139 4.139 25 N -0.166 5.166 26 N -0.166 5.166 27 C -0.047 4.047 28 C -0.082 4.082 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.253 0.747 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.209 0.791 45 H 0.108 0.892 46 H 0.129 0.871 47 H 0.103 0.897 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.304 -8.346 36.897 37.831 hybrid contribution 0.741 0.230 -1.650 1.823 sum 1.045 -8.116 35.247 36.185 Atomic orbital electron populations 1.21703 0.93855 1.01842 1.01918 1.21208 0.97276 1.00055 0.92142 0.89867 1.21981 0.98218 0.97836 0.88263 1.60026 1.64842 1.06030 1.00386 1.21622 0.99682 0.98192 0.87593 1.20999 0.83067 0.87393 0.84854 1.90538 1.44507 1.28305 1.86372 1.42046 1.51715 1.24277 1.05346 1.19024 1.34646 1.07066 0.85135 0.92582 1.26090 0.98601 1.02677 0.93847 1.69801 1.47292 1.41158 0.99256 0.85377 0.78991 0.77446 0.79786 1.18217 1.20074 1.15503 1.21165 0.99240 0.95149 0.83630 1.45948 1.57852 1.28286 1.05108 1.21343 0.78222 0.85331 0.85426 1.90703 1.41918 1.26657 1.87342 1.19950 1.04305 0.98843 0.86054 1.19749 0.96486 1.06499 1.02225 1.24094 0.98207 0.98480 0.93090 1.77258 1.04713 1.11259 1.23351 1.48757 1.11700 1.32462 1.23722 1.22151 1.03033 0.89445 0.90063 1.22839 0.98940 0.96879 0.89590 0.91422 0.93064 0.93152 0.94048 0.90230 0.83654 0.90735 0.86968 0.77505 0.91168 0.92550 0.92273 0.74738 0.85783 0.85363 0.79113 0.89239 0.87134 0.89683 0.78187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.95 71.98 0.64 -1.57 16 2 C -0.09 -1.34 2.57 -10.79 -0.03 -1.36 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.07 1.25 5.07 86.30 0.44 1.68 16 5 N -0.68 -18.39 5.58 -517.92 -2.89 -21.28 16 6 C 0.06 1.81 6.17 85.56 0.53 2.33 16 7 C 0.45 19.91 7.82 87.66 0.69 20.59 16 8 O -0.61 -33.39 15.78 -3.06 -0.05 -33.44 16 9 N -0.59 -27.68 5.09 -306.98 -1.56 -29.25 16 10 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 11 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 12 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 13 N -0.93 -56.21 13.96 21.67 0.30 -55.91 16 14 Si 0.96 38.64 27.74 68.60 1.90 40.54 16 15 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 16 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 17 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 18 C 0.13 2.03 5.06 86.38 0.44 2.47 16 19 N -0.72 -8.63 5.28 -463.05 -2.45 -11.07 16 20 C 0.51 8.13 7.82 87.66 0.69 8.81 16 21 O -0.59 -15.58 16.03 -3.04 -0.05 -15.63 16 22 C -0.05 -0.45 6.19 29.10 0.18 -0.27 16 23 C -0.24 -3.60 4.59 -20.14 -0.09 -3.69 16 24 C 0.05 0.87 11.96 85.24 1.02 1.89 16 25 N -0.34 -7.52 12.58 -57.02 -0.72 -8.24 16 26 N -0.38 -6.22 4.01 -369.56 -1.48 -7.71 16 27 C 0.09 0.68 11.47 127.77 1.47 2.15 16 28 C 0.06 0.88 11.40 83.54 0.95 1.84 16 29 H 0.07 0.78 7.18 -2.39 -0.02 0.77 16 30 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.34 9.93 8.43 -89.70 -0.76 9.18 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.39 15.05 5.76 -92.71 -0.53 14.52 16 38 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.42 2.62 7.65 -92.71 -0.71 1.91 16 42 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 48 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -89.92 405.96 0.18 -89.74 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -1.06 Total: 36.04 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 8.24 Total: 16.21 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -8.80 Total: -133.45 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -0.10 Total: -49.07 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -89.92 0.18 -89.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267980026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.567 kcal (2) G-P(sol) polarization free energy of solvation -89.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds