Wall clock time and date at job start Tue Mar 31 2020 20:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.53002 * 109.47379 * 119.99788 * 2 1 3 5 5 N 1.46906 * 109.47053 * 295.00410 * 4 2 1 6 6 C 1.46895 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.47030 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99926 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00169 * 179.97438 * 7 6 5 10 10 C 1.37102 * 120.00058 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00073 * 0.02562 * 10 9 7 12 12 C 1.38957 * 120.00049 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99604 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47161 * 60.00224 * 14 12 10 16 16 H 1.48506 * 109.46664 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47253 * 299.99863 * 14 12 10 18 18 C 1.53001 * 109.47333 * 239.99881 * 2 1 3 19 19 N 1.46503 * 109.47149 * 64.99757 * 18 2 1 20 20 C 1.34771 * 120.00203 * 179.97438 * 19 18 2 21 21 O 1.21286 * 119.99569 * 0.02562 * 20 19 18 22 22 C 1.50693 * 120.00351 * 179.97438 * 20 19 18 23 23 C 1.50696 * 109.47536 * 180.02562 * 22 20 19 24 24 C 1.39873 * 126.03943 * 90.02612 * 23 22 20 25 25 N 1.30837 * 108.20523 * 179.97438 * 24 23 22 26 26 N 1.40081 * 108.20487 * 359.97438 * 25 24 23 27 27 C 1.46494 * 126.03949 * 179.97438 * 26 25 24 28 28 C 1.34955 * 107.92266 * 359.76000 * 26 25 24 29 29 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 30 30 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 32 32 H 1.08992 * 109.47056 * 175.00080 * 4 2 1 33 33 H 1.09004 * 109.47006 * 55.00197 * 4 2 1 34 34 H 1.00899 * 110.99484 * 303.95475 * 5 4 2 35 35 H 1.08996 * 109.47424 * 299.99656 * 6 5 4 36 36 H 1.09002 * 109.47411 * 60.00282 * 6 5 4 37 37 H 0.97000 * 120.00220 * 0.02562 * 9 7 6 38 38 H 0.97005 * 119.99191 * 179.97438 * 13 12 10 39 39 H 1.08995 * 109.47139 * 184.99680 * 18 2 1 40 40 H 1.09005 * 109.47062 * 304.99884 * 18 2 1 41 41 H 0.96998 * 119.99417 * 0.02562 * 19 18 2 42 42 H 1.08995 * 109.47486 * 300.00559 * 22 20 19 43 43 H 1.09005 * 109.46910 * 60.00348 * 22 20 19 44 44 H 1.08003 * 125.89476 * 359.97438 * 24 23 22 45 45 H 1.08995 * 109.47170 * 89.97653 * 27 26 25 46 46 H 1.08991 * 109.47705 * 209.98245 * 27 26 25 47 47 H 1.09000 * 109.46947 * 329.98134 * 27 26 25 48 48 H 1.07999 * 126.12075 * 180.23388 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6514 0.0375 2.4457 6 6 2.1248 -0.6270 3.6672 7 6 1.7088 0.1788 4.8709 8 8 1.0794 1.2054 4.7254 9 7 2.0351 -0.2418 6.1089 10 6 1.6562 0.4910 7.2040 11 1 1.0958 1.4051 7.0744 12 6 1.9932 0.0577 8.4805 13 7 2.6755 -1.0543 8.6380 14 14 1.4775 1.0565 9.9724 15 1 -0.0032 1.1631 10.0090 16 1 1.9566 0.3851 11.2073 17 1 2.0697 2.4156 9.8869 18 6 2.0401 -0.7213 -1.2492 19 7 1.6525 0.0353 -2.4424 20 6 1.9965 -0.4131 -3.6659 21 8 2.6266 -1.4433 -3.7791 22 6 1.5973 0.3647 -4.8933 23 6 2.0998 -0.3455 -6.1237 24 6 1.4078 -1.3183 -6.8526 25 7 2.1652 -1.6978 -7.8497 26 7 3.3647 -0.9770 -7.7871 27 6 4.4912 -1.0960 -8.7159 28 6 3.2973 -0.1501 -6.7226 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.1263 -0.7994 1.2056 33 1 1.6055 -1.7198 1.2952 34 1 1.9881 0.9874 2.3966 35 1 1.6905 -1.6247 3.7297 36 1 3.2117 -0.7049 3.6406 37 1 2.5382 -1.0630 6.2254 38 1 2.9111 -1.3566 9.5292 39 1 3.1263 -0.7994 -1.2056 40 1 1.6055 -1.7199 -1.2951 41 1 1.1489 0.8593 -2.3517 42 1 0.5110 0.4422 -4.9370 43 1 2.0312 1.3637 -4.8474 44 1 0.4189 -1.6917 -6.6306 45 1 4.3604 -0.3921 -9.5378 46 1 5.4201 -0.8731 -8.1911 47 1 4.5313 -2.1114 -9.1102 48 1 4.0632 0.5414 -6.4041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267980027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:18 Heat of formation + Delta-G solvation = -1.841614 kcal Electronic energy + Delta-G solvation = -27246.800005 eV Core-core repulsion = 23145.247685 eV Total energy + Delta-G solvation = -4101.552320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56204 -39.76337 -38.36283 -37.17655 -34.85477 -33.99106 -33.85022 -32.52774 -31.84613 -31.18405 -28.86436 -27.40048 -26.95456 -25.79083 -24.65506 -23.05438 -21.44850 -21.18591 -20.73205 -20.08125 -19.16908 -17.88551 -17.36817 -17.13179 -16.32161 -15.94962 -15.75933 -15.69695 -15.46668 -14.85806 -14.67963 -14.49775 -14.38682 -13.96544 -13.83322 -13.56387 -13.46697 -13.37630 -13.16240 -12.94731 -12.73943 -12.59938 -12.39593 -12.13647 -11.87299 -11.66501 -11.51332 -11.12825 -11.04798 -10.96759 -10.91290 -10.85827 -10.44141 -10.21173 -10.06730 -9.72999 -9.49662 -9.24513 -8.71780 -8.45755 -8.04929 -7.95432 -6.41339 -3.82254 1.56227 2.18284 2.39700 2.49295 3.12464 3.20303 3.26028 3.30393 3.91521 4.09947 4.12784 4.31894 4.45472 4.58743 4.69954 4.72306 4.74078 4.77012 4.88526 4.95904 4.96653 5.01761 5.18150 5.26079 5.26914 5.36253 5.44155 5.49248 5.63552 5.69403 5.73244 5.77440 5.88444 5.91150 5.99483 6.11993 6.27207 6.27828 6.30418 6.41293 6.64902 7.20580 7.30647 7.36970 7.55200 7.65797 8.06451 8.07273 8.61664 9.18065 9.54799 10.06236 10.76320 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.043446 B = 0.001315 C = 0.001300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.329500 B =21284.479097 C =21532.805189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.125 3.875 19 N -0.730 5.730 20 C 0.509 3.491 21 O -0.534 6.534 22 C -0.060 4.060 23 C -0.221 4.221 24 C 0.064 3.936 25 N -0.300 5.300 26 N -0.377 5.377 27 C 0.102 3.898 28 C 0.069 3.931 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.348 0.652 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.401 0.599 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.181 0.819 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 1.638 -31.494 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.001 3.999 19 N -0.383 5.383 20 C 0.295 3.705 21 O -0.410 6.410 22 C -0.101 4.101 23 C -0.233 4.233 24 C -0.123 4.123 25 N -0.121 5.121 26 N -0.159 5.159 27 C -0.039 4.039 28 C -0.078 4.078 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.167 0.833 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.198 0.802 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.986 0.406 -32.581 32.644 hybrid contribution 0.872 0.960 1.708 2.145 sum 2.858 1.365 -30.873 31.035 Atomic orbital electron populations 1.21757 0.93725 1.02163 1.02072 1.21338 0.97621 0.99899 0.92982 0.90566 1.21903 0.97308 0.97993 0.89268 1.60035 1.64161 1.05813 0.99786 1.21665 0.97740 0.98660 0.90125 1.19813 0.85554 0.87934 0.84090 1.90516 1.44135 1.26440 1.85751 1.41857 1.49498 1.24209 1.04436 1.19661 1.32989 1.06742 0.83643 0.87976 1.25260 0.96891 0.96632 0.99095 1.69609 1.38801 1.21738 1.24157 0.85918 0.79068 0.79377 0.79853 1.19872 1.20980 1.19936 1.21364 0.99854 0.95467 0.83249 1.46048 1.58368 1.28029 1.05866 1.20774 0.79402 0.85929 0.84425 1.90722 1.39307 1.24322 1.86626 1.19885 1.02748 0.98537 0.88900 1.19391 0.96531 1.05987 1.01396 1.23725 0.99916 0.95903 0.92743 1.77349 0.92836 1.18400 1.23469 1.48395 1.14079 1.30661 1.22752 1.21848 0.85384 1.04369 0.92324 1.22246 0.98849 0.96750 0.89940 0.93634 0.92824 0.90478 0.95339 0.90763 0.83267 0.89591 0.93911 0.77453 0.91824 0.91703 0.91342 0.76484 0.88045 0.88403 0.80197 0.90780 0.89472 0.89271 0.81142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.95 37.16 0.33 -1.02 16 2 C -0.10 -0.92 2.57 -90.62 -0.23 -1.15 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.07 0.75 5.07 -3.82 -0.02 0.73 16 5 N -0.67 -10.18 5.58 -115.06 -0.64 -10.82 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 8 O -0.58 -15.67 15.78 5.54 0.09 -15.59 16 9 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 13 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 14 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.12 1.14 5.06 -4.04 -0.02 1.12 16 19 N -0.73 -5.55 5.28 -60.29 -0.32 -5.87 16 20 C 0.51 4.72 7.82 -10.99 -0.09 4.64 16 21 O -0.53 -7.49 16.03 5.55 0.09 -7.40 16 22 C -0.06 -0.36 6.18 -29.04 -0.18 -0.54 16 23 C -0.22 -1.88 4.59 -105.06 -0.48 -2.36 16 24 C 0.06 0.61 11.96 -17.36 -0.21 0.40 16 25 N -0.30 -3.30 12.58 30.63 0.39 -2.91 16 26 N -0.38 -3.27 4.01 -68.17 -0.27 -3.55 16 27 C 0.10 0.45 11.47 59.84 0.69 1.13 16 28 C 0.07 0.54 11.40 -17.22 -0.20 0.34 16 29 H 0.04 0.35 7.18 -51.93 -0.37 -0.03 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.35 5.47 8.43 -39.29 -0.33 5.14 16 35 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.40 2.04 7.65 -40.82 -0.31 1.73 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.18 1.28 8.06 -52.48 -0.42 0.86 16 45 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 409.08 15.07 6.16 6.16 Total: -1.00 -36.88 409.08 -7.22 -44.10 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -7.59 Total: 11.63 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.76 Total: 6.37 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.18 Total: -61.25 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.18 Total: -22.98 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.88 -7.22 -44.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267980027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.257 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds