Wall clock time and date at job start Tue Mar 31 2020 20:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.53002 * 109.47379 * 119.99788 * 2 1 3 5 5 N 1.46906 * 109.47053 * 295.00410 * 4 2 1 6 6 C 1.46895 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.47030 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99926 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00169 * 179.97438 * 7 6 5 10 10 C 1.37102 * 120.00058 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00073 * 0.02562 * 10 9 7 12 12 C 1.38957 * 120.00049 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99604 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47161 * 60.00224 * 14 12 10 16 16 H 1.48506 * 109.46664 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47253 * 299.99863 * 14 12 10 18 18 C 1.53001 * 109.47333 * 239.99881 * 2 1 3 19 19 N 1.46503 * 109.47149 * 64.99757 * 18 2 1 20 20 C 1.34771 * 120.00203 * 179.97438 * 19 18 2 21 21 O 1.21286 * 119.99569 * 0.02562 * 20 19 18 22 22 C 1.50693 * 120.00351 * 179.97438 * 20 19 18 23 23 C 1.50696 * 109.47536 * 180.02562 * 22 20 19 24 24 C 1.39873 * 126.03943 * 90.02612 * 23 22 20 25 25 N 1.30837 * 108.20523 * 179.97438 * 24 23 22 26 26 N 1.40081 * 108.20487 * 359.97438 * 25 24 23 27 27 C 1.46494 * 126.03949 * 179.97438 * 26 25 24 28 28 C 1.34955 * 107.92266 * 359.76000 * 26 25 24 29 29 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 30 30 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 32 32 H 1.08992 * 109.47056 * 175.00080 * 4 2 1 33 33 H 1.09004 * 109.47006 * 55.00197 * 4 2 1 34 34 H 1.00899 * 110.99484 * 303.95475 * 5 4 2 35 35 H 1.08996 * 109.47424 * 299.99656 * 6 5 4 36 36 H 1.09002 * 109.47411 * 60.00282 * 6 5 4 37 37 H 0.97000 * 120.00220 * 0.02562 * 9 7 6 38 38 H 0.97005 * 119.99191 * 179.97438 * 13 12 10 39 39 H 1.08995 * 109.47139 * 184.99680 * 18 2 1 40 40 H 1.09005 * 109.47062 * 304.99884 * 18 2 1 41 41 H 0.96998 * 119.99417 * 0.02562 * 19 18 2 42 42 H 1.08995 * 109.47486 * 300.00559 * 22 20 19 43 43 H 1.09005 * 109.46910 * 60.00348 * 22 20 19 44 44 H 1.08003 * 125.89476 * 359.97438 * 24 23 22 45 45 H 1.08995 * 109.47170 * 89.97653 * 27 26 25 46 46 H 1.08991 * 109.47705 * 209.98245 * 27 26 25 47 47 H 1.09000 * 109.46947 * 329.98134 * 27 26 25 48 48 H 1.07999 * 126.12075 * 180.23388 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6514 0.0375 2.4457 6 6 2.1248 -0.6270 3.6672 7 6 1.7088 0.1788 4.8709 8 8 1.0794 1.2054 4.7254 9 7 2.0351 -0.2418 6.1089 10 6 1.6562 0.4910 7.2040 11 1 1.0958 1.4051 7.0744 12 6 1.9932 0.0577 8.4805 13 7 2.6755 -1.0543 8.6380 14 14 1.4775 1.0565 9.9724 15 1 -0.0032 1.1631 10.0090 16 1 1.9566 0.3851 11.2073 17 1 2.0697 2.4156 9.8869 18 6 2.0401 -0.7213 -1.2492 19 7 1.6525 0.0353 -2.4424 20 6 1.9965 -0.4131 -3.6659 21 8 2.6266 -1.4433 -3.7791 22 6 1.5973 0.3647 -4.8933 23 6 2.0998 -0.3455 -6.1237 24 6 1.4078 -1.3183 -6.8526 25 7 2.1652 -1.6978 -7.8497 26 7 3.3647 -0.9770 -7.7871 27 6 4.4912 -1.0960 -8.7159 28 6 3.2973 -0.1501 -6.7226 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.1263 -0.7994 1.2056 33 1 1.6055 -1.7198 1.2952 34 1 1.9881 0.9874 2.3966 35 1 1.6905 -1.6247 3.7297 36 1 3.2117 -0.7049 3.6406 37 1 2.5382 -1.0630 6.2254 38 1 2.9111 -1.3566 9.5292 39 1 3.1263 -0.7994 -1.2056 40 1 1.6055 -1.7199 -1.2951 41 1 1.1489 0.8593 -2.3517 42 1 0.5110 0.4422 -4.9370 43 1 2.0312 1.3637 -4.8474 44 1 0.4189 -1.6917 -6.6306 45 1 4.3604 -0.3921 -9.5378 46 1 5.4201 -0.8731 -8.1911 47 1 4.5313 -2.1114 -9.1102 48 1 4.0632 0.5414 -6.4041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267980027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:17 Heat of formation + Delta-G solvation = -30.877469 kcal Electronic energy + Delta-G solvation = -27248.059094 eV Core-core repulsion = 23145.247685 eV Total energy + Delta-G solvation = -4102.811409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14065 -40.51459 -40.12594 -38.21061 -36.14566 -35.58344 -34.51799 -33.46209 -33.16761 -32.50032 -29.43530 -28.75429 -27.63166 -26.76728 -26.04290 -24.26906 -22.02462 -21.85809 -21.58560 -21.04766 -20.63874 -19.87252 -18.03829 -17.84780 -17.62868 -16.96088 -16.81491 -16.53845 -16.37272 -16.22824 -15.94075 -15.56878 -15.28877 -15.17105 -15.08961 -14.57873 -14.36704 -14.15765 -13.91513 -13.85414 -13.51508 -13.40375 -13.36558 -13.18393 -13.13498 -12.99839 -12.82825 -12.58799 -12.42046 -12.11934 -11.96009 -11.89808 -11.66782 -11.51797 -11.48462 -10.85580 -10.34163 -10.32475 -10.00421 -9.97453 -9.29160 -9.27783 -8.45408 -5.94298 0.98826 1.41069 1.42896 1.53858 1.70534 1.78632 1.81706 2.06941 2.29786 2.47132 2.99774 3.22131 3.55860 3.67320 3.91656 3.96795 4.01564 4.10115 4.13728 4.31748 4.34196 4.38968 4.43900 4.49970 4.54479 4.55233 4.60209 4.67437 4.68156 4.81819 4.86367 4.89688 4.92039 5.02096 5.14214 5.21176 5.34139 5.41823 5.54532 5.60426 5.72403 5.90203 6.11619 6.17559 6.44938 6.61297 6.71697 6.75956 7.13627 7.43089 7.57696 8.12718 8.71748 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.043446 B = 0.001315 C = 0.001300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.329500 B =21284.479097 C =21532.805189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.086 0.914 4 C 0.065 3.935 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.133 3.867 19 N -0.718 5.718 20 C 0.508 3.492 21 O -0.587 6.587 22 C -0.050 4.050 23 C -0.238 4.238 24 C 0.047 3.953 25 N -0.343 5.343 26 N -0.385 5.385 27 C 0.093 3.907 28 C 0.064 3.936 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.345 0.655 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.416 0.584 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.192 0.808 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.084 0.916 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 2.660 -32.050 32.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.104 0.896 4 C -0.064 4.064 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.196 1.196 18 C 0.008 3.992 19 N -0.371 5.371 20 C 0.296 3.704 21 O -0.467 6.467 22 C -0.091 4.091 23 C -0.249 4.249 24 C -0.138 4.138 25 N -0.166 5.166 26 N -0.167 5.167 27 C -0.047 4.047 28 C -0.083 4.083 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.253 0.747 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.209 0.791 45 H 0.108 0.892 46 H 0.128 0.872 47 H 0.103 0.897 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.388 1.433 -33.155 33.272 hybrid contribution 0.766 0.636 1.809 2.065 sum 3.154 2.069 -31.346 31.573 Atomic orbital electron populations 1.21706 0.93857 1.01773 1.02003 1.21195 0.97272 1.00081 0.91948 0.89602 1.21982 0.98085 0.97802 0.88527 1.60029 1.64650 1.05940 1.00207 1.21520 0.99037 0.98021 0.88210 1.20877 0.83885 0.87638 0.85059 1.90484 1.45516 1.28314 1.86501 1.41936 1.50061 1.24322 1.04775 1.19656 1.34514 1.07038 0.85324 0.90214 1.26039 0.96403 0.97548 1.01208 1.69673 1.38913 1.22509 1.25079 0.84991 0.78637 0.78052 0.76678 1.19710 1.19570 1.19607 1.21155 0.99259 0.95091 0.83688 1.45935 1.57879 1.28249 1.05060 1.21364 0.78263 0.85309 0.85426 1.90706 1.41863 1.26759 1.87339 1.19946 1.04315 0.98860 0.85971 1.19749 0.96822 1.06120 1.02254 1.24100 1.00595 0.96313 0.92839 1.77258 0.94331 1.20132 1.24837 1.48755 1.14104 1.30336 1.23469 1.22147 0.85173 1.04705 0.92663 1.22834 0.99385 0.96673 0.89394 0.91263 0.93385 0.92952 0.94266 0.90652 0.83627 0.88069 0.91725 0.77028 0.91328 0.92448 0.92549 0.74694 0.85690 0.85350 0.79076 0.89214 0.87173 0.89685 0.78221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.95 71.98 0.64 -1.77 16 2 C -0.09 -1.43 2.57 -10.79 -0.03 -1.46 16 3 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.07 1.39 5.07 86.30 0.44 1.83 16 5 N -0.68 -19.90 5.58 -517.93 -2.89 -22.79 16 6 C 0.06 2.16 6.17 85.56 0.53 2.69 16 7 C 0.44 20.60 7.82 87.66 0.69 21.29 16 8 O -0.62 -33.91 15.78 -3.07 -0.05 -33.96 16 9 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 10 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 11 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 12 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 13 N -0.92 -49.69 13.05 21.67 0.28 -49.41 16 14 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C 0.13 2.22 5.06 86.38 0.44 2.65 16 19 N -0.72 -9.22 5.28 -463.06 -2.45 -11.67 16 20 C 0.51 8.50 7.82 87.66 0.69 9.19 16 21 O -0.59 -16.13 16.03 -3.05 -0.05 -16.18 16 22 C -0.05 -0.47 6.18 29.10 0.18 -0.29 16 23 C -0.24 -3.71 4.59 -20.15 -0.09 -3.80 16 24 C 0.05 0.89 11.96 85.24 1.02 1.91 16 25 N -0.34 -7.66 12.58 -57.02 -0.72 -8.38 16 26 N -0.38 -6.42 4.01 -369.59 -1.48 -7.90 16 27 C 0.09 0.73 11.47 127.77 1.47 2.19 16 28 C 0.06 0.91 11.40 83.54 0.95 1.86 16 29 H 0.07 0.88 7.18 -2.39 -0.02 0.86 16 30 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.05 1.22 7.75 -2.39 -0.02 1.20 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.35 10.53 8.43 -89.69 -0.76 9.77 16 35 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.40 19.29 7.90 -92.71 -0.73 18.55 16 38 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 41 H 0.42 2.86 7.65 -92.71 -0.71 2.16 16 42 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.13 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 45 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 48 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -81.94 409.08 0.05 -81.89 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -1.20 Total: 36.73 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 8.20 Total: 17.90 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -8.88 Total: -131.12 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -0.10 Total: -50.14 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -81.94 0.05 -81.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267980027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.012 kcal (2) G-P(sol) polarization free energy of solvation -81.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds