Wall clock time and date at job start Tue Mar 31 2020 20:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47050 * 59.99408 * 10 8 6 12 12 H 1.48496 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46855 * 299.99389 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 N 1.46504 * 109.46876 * 179.97438 * 18 16 15 20 20 N 1.40314 * 126.32415 * 270.02270 * 19 18 16 21 21 C 1.28868 * 108.11677 * 180.51316 * 20 19 18 22 22 N 1.38003 * 108.82418 * 0.54459 * 21 20 19 23 23 C 1.34321 * 108.32225 * 358.31506 * 22 21 20 24 24 O 1.21815 * 126.32725 * 182.03566 * 23 22 21 25 25 C 1.46727 * 124.17430 * 177.60530 * 22 21 20 26 26 C 1.53277 * 108.66236 * 19.33532 * 25 22 21 27 27 C 1.53235 * 109.36302 * 308.21480 * 26 25 22 28 28 C 1.51125 * 127.45780 * 180.94093 * 21 20 19 29 29 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 31 31 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 32 32 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 33 33 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 34 34 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 37 37 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 38 38 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 39 39 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 40 40 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 41 41 H 1.09001 * 109.60554 * 259.57758 * 25 22 21 42 42 H 1.09007 * 109.60099 * 139.08679 * 25 22 21 43 43 H 1.09004 * 109.48846 * 188.24836 * 26 25 22 44 44 H 1.09007 * 109.49207 * 68.18281 * 26 25 22 45 45 H 1.09000 * 109.54448 * 310.86869 * 27 26 25 46 46 H 1.08998 * 109.62739 * 190.63384 * 27 26 25 47 47 H 1.08994 * 109.75338 * 317.32497 * 28 21 20 48 48 H 1.09000 * 109.75067 * 78.01971 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 1.5157 -1.6757 -6.7281 12 1 1.5906 0.6060 -7.5448 13 1 3.5834 -0.4141 -6.6121 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 7 2.0844 -0.3262 6.0895 20 7 1.3944 -1.3022 6.8244 21 6 2.1413 -1.6641 7.8103 22 7 3.3179 -0.9442 7.7651 23 6 3.2833 -0.1458 6.6855 24 8 4.1685 0.6037 6.3136 25 6 4.3899 -1.0538 8.7609 26 6 4.2202 -2.3740 9.5210 27 6 2.7844 -2.4768 10.0464 28 6 1.8340 -2.7039 8.8629 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8594 -2.3517 35 1 0.6804 1.9069 -5.4839 36 1 1.6053 -1.7197 1.2952 37 1 3.1263 -0.7995 1.2056 38 1 1.1487 0.8594 2.3518 39 1 2.0324 1.3633 4.8474 40 1 0.5109 0.4440 4.9368 41 1 4.3272 -0.2191 9.4591 42 1 5.3576 -1.0423 8.2593 43 1 4.9170 -2.4035 10.3587 44 1 4.4225 -3.2087 8.8498 45 1 2.5160 -1.5522 10.5575 46 1 2.7078 -3.3131 10.7412 47 1 0.8011 -2.5982 9.1946 48 1 1.9886 -3.7014 8.4516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268010688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:31 Heat of formation + Delta-G solvation = -18.381116 kcal Electronic energy + Delta-G solvation = -28643.891480 eV Core-core repulsion = 24541.621953 eV Total energy + Delta-G solvation = -4102.269526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.66259 -40.89653 -38.85356 -38.33290 -37.75375 -36.01890 -34.55710 -34.14757 -33.54556 -31.96070 -30.04547 -29.21049 -27.70359 -26.93082 -25.30989 -24.25974 -23.65169 -22.89575 -21.79544 -21.22951 -20.68730 -19.31603 -18.56922 -18.49470 -17.62378 -17.41187 -17.04753 -16.84434 -16.53718 -16.29852 -15.77263 -15.58773 -15.48317 -15.25576 -15.18057 -15.03998 -14.65115 -14.34317 -14.22069 -13.98955 -13.77511 -13.58560 -13.30971 -13.12410 -12.97119 -12.91948 -12.78465 -12.23003 -12.20402 -12.08648 -12.02109 -11.88685 -11.85566 -11.76020 -11.67957 -11.49517 -11.35868 -10.95100 -10.80568 -10.21372 -9.67027 -9.01049 -7.96505 -5.25018 0.58145 0.92591 1.43694 1.46031 1.46712 1.49477 1.55660 1.92318 2.18178 2.55749 3.20512 3.36787 3.55290 3.62982 3.69245 3.74948 3.84337 3.91242 3.95374 4.05177 4.10250 4.32458 4.33155 4.38017 4.44622 4.51694 4.54656 4.66153 4.71710 4.78897 4.87818 4.89298 4.91653 4.99791 5.04167 5.06322 5.10123 5.17829 5.26086 5.35045 5.36314 5.46600 5.48283 5.59167 6.25803 6.40526 6.53657 6.85336 7.09162 7.32834 8.07422 8.32621 9.26532 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033024 B = 0.001676 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.654030 B =16699.268100 C =16780.733855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.080 0.920 4 C 0.156 3.844 5 N -0.740 5.740 6 C -0.251 4.251 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.974 3.026 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.280 1.280 14 C 0.140 3.860 15 N -0.705 5.705 16 C 0.493 3.507 17 O -0.581 6.581 18 C 0.141 3.859 19 N -0.446 5.446 20 N -0.299 5.299 21 C 0.286 3.714 22 N -0.555 5.555 23 C 0.636 3.364 24 O -0.598 6.598 25 C 0.118 3.882 26 C -0.131 4.131 27 C -0.117 4.117 28 C -0.041 4.041 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.021 0.979 33 H 0.016 0.984 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.420 0.580 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -6.275 38.372 38.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.099 0.901 4 C 0.029 3.971 5 N -0.383 5.383 6 C -0.383 4.383 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.803 3.197 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.206 1.206 14 C 0.016 3.984 15 N -0.359 5.359 16 C 0.279 3.721 17 O -0.461 6.461 18 C 0.017 3.983 19 N -0.264 5.264 20 N -0.121 5.121 21 C 0.008 3.992 22 N -0.283 5.283 23 C 0.335 3.665 24 O -0.475 6.475 25 C -0.002 4.002 26 C -0.169 4.169 27 C -0.155 4.155 28 C -0.080 4.080 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.034 0.966 34 H 0.210 0.790 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.258 0.742 39 H 0.160 0.840 40 H 0.181 0.819 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.139 0.861 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.136 0.864 47 H 0.144 0.856 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.360 -6.664 37.539 38.127 hybrid contribution 0.801 0.759 -1.581 1.928 sum 0.441 -5.904 35.958 36.442 Atomic orbital electron populations 1.21729 0.93460 1.02009 1.02034 1.21329 0.97470 1.00036 0.92397 0.90147 1.20715 0.96361 0.94204 0.85816 1.42473 1.66844 1.27791 1.01239 1.19593 1.28081 1.05511 0.85115 0.90999 1.25545 1.01524 0.97919 1.01510 1.69794 1.44611 1.18030 1.29222 0.85211 0.77819 0.77221 0.79483 1.20448 1.21856 1.20597 1.21114 0.99182 0.95127 0.83002 1.45767 1.57315 1.28240 1.04554 1.21467 0.78991 0.85746 0.85919 1.90709 1.41550 1.26603 1.87189 1.21492 1.04708 0.94802 0.77320 1.48500 1.14155 1.37594 1.26175 1.76754 1.21249 1.07618 1.06502 1.25344 0.82347 0.95280 0.96273 1.46324 1.19802 1.37363 1.24767 1.16856 0.83854 0.83459 0.82290 1.91028 1.41400 1.44238 1.70876 1.22193 0.87535 1.01903 0.88601 1.22032 0.99719 0.94119 1.00989 1.21758 0.92112 1.05295 0.96335 1.20889 1.03750 0.93488 0.89882 0.93007 0.90106 0.93753 0.96110 0.96620 0.78991 0.93912 0.91802 0.92844 0.74241 0.84013 0.81893 0.88554 0.90461 0.86090 0.91029 0.90242 0.86385 0.85614 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.94 71.98 0.64 -3.17 16 2 C -0.09 -2.86 2.46 -10.80 -0.03 -2.89 16 3 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 4 C 0.16 6.38 5.65 86.38 0.49 6.87 16 5 N -0.74 -37.99 5.33 -343.46 -1.83 -39.82 16 6 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 7 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 8 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 9 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 10 Si 0.97 46.78 29.55 68.60 2.03 48.80 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 C 0.14 3.98 5.06 86.38 0.44 4.42 16 15 N -0.71 -16.03 5.28 -463.07 -2.45 -18.48 16 16 C 0.49 13.36 7.90 87.66 0.69 14.05 16 17 O -0.58 -21.89 16.43 -3.05 -0.05 -21.94 16 18 C 0.14 2.83 6.87 85.63 0.59 3.42 16 19 N -0.45 -11.57 3.12 -481.98 -1.50 -13.07 16 20 N -0.30 -6.84 12.51 -49.11 -0.61 -7.45 16 21 C 0.29 4.87 7.73 137.76 1.06 5.93 16 22 N -0.55 -11.34 3.13 -644.23 -2.02 -13.36 16 23 C 0.64 18.64 8.64 179.10 1.55 20.19 16 24 O -0.60 -21.71 17.83 -4.72 -0.08 -21.80 16 25 C 0.12 1.41 6.88 86.43 0.59 2.00 16 26 C -0.13 -0.47 5.94 30.77 0.18 -0.29 16 27 C -0.12 -0.07 5.96 30.83 0.18 0.11 16 28 C -0.04 -0.21 6.32 30.14 0.19 -0.02 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.66 7.18 -2.39 -0.02 1.64 16 31 H 0.04 1.51 7.18 -2.38 -0.02 1.49 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.02 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.38 20.14 6.85 -92.70 -0.64 19.51 16 35 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.42 6.54 7.66 -92.71 -0.71 5.84 16 39 H 0.14 2.32 8.12 -2.39 -0.02 2.30 16 40 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.12 -0.17 8.14 -2.38 -0.02 -0.19 16 44 H 0.07 0.40 8.10 -2.38 -0.02 0.38 16 45 H 0.08 0.04 8.11 -2.39 -0.02 0.02 16 46 H 0.12 -0.51 8.14 -2.39 -0.02 -0.53 16 47 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 48 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -89.71 396.59 1.29 -88.42 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -0.36 Total: 24.21 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 7.89 Total: 33.36 kcal Atomic # 7 Polarization: -142.93 SS G_CDS: -8.13 Total: -151.06 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.13 Total: -43.74 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -89.71 1.29 -88.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268010688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.039 kcal (2) G-P(sol) polarization free energy of solvation -89.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds