Wall clock time and date at job start Tue Mar 31 2020 20:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46935 * 90.00259 * 10 8 6 12 12 H 1.48507 * 109.47218 * 210.00042 * 10 8 6 13 13 H 1.48492 * 109.47204 * 330.00019 * 10 8 6 14 14 C 1.53001 * 109.47347 * 239.99678 * 2 1 3 15 15 N 1.46503 * 109.47149 * 65.00153 * 14 2 1 16 16 C 1.34769 * 119.99831 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99882 * 180.02562 * 16 15 14 19 19 N 1.46494 * 109.47495 * 180.02562 * 18 16 15 20 20 N 1.40309 * 126.32378 * 270.02545 * 19 18 16 21 21 C 1.28873 * 108.11866 * 180.50794 * 20 19 18 22 22 N 1.38003 * 108.82542 * 0.54380 * 21 20 19 23 23 C 1.34324 * 108.31856 * 358.31165 * 22 21 20 24 24 O 1.21817 * 126.33281 * 182.03319 * 23 22 21 25 25 C 1.46725 * 124.18340 * 177.60521 * 22 21 20 26 26 C 1.53289 * 108.65658 * 19.33511 * 25 22 21 27 27 C 1.53234 * 109.36013 * 308.21631 * 26 25 22 28 28 C 1.51123 * 127.46192 * 180.94220 * 21 20 19 29 29 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 30 30 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 31 31 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 33 33 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 34 34 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 35 35 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.47104 * 185.00632 * 14 2 1 37 37 H 1.09005 * 109.47062 * 305.00281 * 14 2 1 38 38 H 0.97002 * 119.99560 * 359.97438 * 15 14 2 39 39 H 1.09005 * 109.47433 * 300.00035 * 18 16 15 40 40 H 1.09000 * 109.47417 * 59.99690 * 18 16 15 41 41 H 1.08997 * 109.60205 * 259.58353 * 25 22 21 42 42 H 1.08997 * 109.60622 * 139.08250 * 25 22 21 43 43 H 1.08997 * 109.48938 * 188.25309 * 26 25 22 44 44 H 1.09004 * 109.48788 * 68.18013 * 26 25 22 45 45 H 1.08997 * 109.54773 * 310.86715 * 27 26 25 46 46 H 1.09003 * 109.62095 * 190.63223 * 27 26 25 47 47 H 1.09003 * 109.75006 * 317.32231 * 28 21 20 48 48 H 1.08992 * 109.75273 * 78.01255 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3371 3.7865 8 6 1.6349 0.2971 4.8161 9 7 0.9509 1.4147 4.6930 10 14 2.1110 -0.3248 6.5119 11 1 3.4337 0.2338 6.8906 12 1 1.0904 0.1052 7.5014 13 1 2.1872 -1.8076 6.4920 14 6 2.0401 -0.7213 -1.2492 15 7 1.6526 0.0352 -2.4424 16 6 1.9966 -0.4132 -3.6658 17 8 2.6266 -1.4434 -3.7791 18 6 1.5985 0.3653 -4.8932 19 7 2.0867 -0.3254 -6.0893 20 7 3.3301 -0.1334 -6.7105 21 6 3.3896 -0.9107 -7.7367 22 7 2.2072 -1.6161 -7.8303 23 6 1.4255 -1.2690 -6.7946 24 8 0.3230 -1.7201 -6.5394 25 6 1.8946 -2.5622 -8.9074 26 6 3.2041 -2.9890 -9.5804 27 6 4.0026 -1.7419 -9.9746 28 6 4.5400 -1.0700 -8.7037 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1262 -0.7995 1.2057 33 1 1.6052 -1.7198 1.2952 34 1 1.1481 0.8591 2.3517 35 1 0.6942 1.9158 5.4829 36 1 3.1263 -0.7996 -1.2054 37 1 1.6054 -1.7199 -1.2951 38 1 1.1483 0.8590 -2.3518 39 1 0.5122 0.4436 -4.9374 40 1 2.0331 1.3638 -4.8470 41 1 1.2466 -2.0811 -9.6400 42 1 1.3949 -3.4372 -8.4920 43 1 2.9805 -3.5745 -10.4722 44 1 3.7900 -3.5917 -8.8865 45 1 3.3541 -1.0471 -10.5081 46 1 4.8361 -2.0286 -10.6159 47 1 4.9520 -0.0915 -8.9505 48 1 5.3140 -1.6931 -8.2558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268010689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:34 Heat of formation + Delta-G solvation = 10.288933 kcal Electronic energy + Delta-G solvation = -28647.503095 eV Core-core repulsion = 24546.476795 eV Total energy + Delta-G solvation = -4101.026300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.84598 -39.77863 -38.00298 -37.15360 -36.75517 -34.37685 -33.87438 -32.92941 -32.42398 -30.15234 -29.38227 -28.35496 -26.41779 -25.41058 -24.50969 -23.10455 -22.57823 -21.90472 -20.67627 -20.20364 -19.86016 -17.82328 -17.66886 -17.01822 -16.72707 -16.43815 -16.15897 -15.65887 -15.41155 -15.03634 -14.83435 -14.74602 -14.49356 -14.40801 -13.90719 -13.84009 -13.57832 -13.28083 -13.07842 -12.88341 -12.51613 -12.38535 -12.24011 -12.15096 -12.00469 -11.73449 -11.60964 -11.56552 -11.05325 -10.90149 -10.70873 -10.65719 -10.55245 -10.43695 -10.39096 -10.05879 -9.83221 -9.65288 -9.06592 -8.86571 -8.74249 -6.91126 -5.76014 -3.04246 1.38190 1.65574 2.43984 2.50210 2.64235 3.18351 3.44913 3.50134 3.51811 3.78420 3.99011 4.08306 4.17267 4.44760 4.57190 4.60810 4.68801 4.76201 4.82456 4.88933 5.04880 5.06520 5.10741 5.16274 5.22618 5.23466 5.34422 5.39722 5.52686 5.58943 5.59924 5.81368 5.82878 5.98211 5.99578 6.11386 6.23069 6.25320 6.40301 6.46690 6.66767 6.78501 6.88163 7.37163 7.40080 7.71705 7.81783 8.11586 8.43160 9.54455 10.11734 10.46773 11.47000 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033216 B = 0.001681 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.772674 B =16652.513551 C =16859.257725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.128 3.872 15 N -0.721 5.721 16 C 0.494 3.506 17 O -0.529 6.529 18 C 0.143 3.857 19 N -0.439 5.439 20 N -0.268 5.268 21 C 0.277 3.723 22 N -0.556 5.556 23 C 0.657 3.343 24 O -0.553 6.553 25 C 0.131 3.869 26 C -0.138 4.138 27 C -0.124 4.124 28 C -0.040 4.040 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.402 0.598 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 -2.694 -35.751 36.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.005 3.995 15 N -0.374 5.374 16 C 0.278 3.722 17 O -0.404 6.404 18 C 0.018 3.982 19 N -0.258 5.258 20 N -0.090 5.090 21 C -0.002 4.002 22 N -0.286 5.286 23 C 0.357 3.643 24 O -0.426 6.426 25 C 0.009 3.991 26 C -0.176 4.176 27 C -0.162 4.162 28 C -0.080 4.080 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.237 0.763 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.124 0.876 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.753 -3.160 -34.881 35.345 hybrid contribution -0.613 -0.147 0.865 1.070 sum 4.140 -3.307 -34.016 34.427 Atomic orbital electron populations 1.21799 0.94603 1.02009 1.01522 1.21552 0.96757 1.00501 0.94087 0.90432 1.20576 0.96607 0.94230 0.85386 1.42331 1.66898 1.27702 1.00567 1.19246 1.28612 1.05460 0.83680 0.91162 1.24734 1.01030 0.97429 0.97853 1.69656 1.43542 1.16638 1.28477 0.86172 0.77565 0.78015 0.84347 1.21741 1.21779 1.20774 1.21432 1.00149 0.95278 0.82689 1.45966 1.57687 1.28042 1.05656 1.20857 0.80166 0.86310 0.84897 1.90733 1.39223 1.24031 1.86426 1.21222 1.01564 0.95853 0.79589 1.48248 1.13406 1.38159 1.25977 1.76753 1.01815 1.22673 1.07714 1.24270 0.89639 0.90711 0.95544 1.46035 1.15971 1.41123 1.25430 1.16449 0.85015 0.81831 0.81016 1.91088 1.17982 1.60305 1.73224 1.21797 0.98306 0.91932 0.87034 1.21995 0.95367 0.98502 1.01717 1.21722 1.00954 0.97035 0.96513 1.20510 0.91813 1.04029 0.91617 0.91103 0.93846 0.92811 0.96132 0.96001 0.78199 0.93550 0.91306 0.91349 0.76346 0.85740 0.85613 0.89987 0.88972 0.88821 0.90296 0.90700 0.89336 0.87596 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.94 37.16 0.33 -1.81 16 2 C -0.11 -1.72 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.16 3.24 5.65 -4.04 -0.02 3.22 16 5 N -0.73 -18.49 5.33 -59.90 -0.32 -18.81 16 6 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 7 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 10 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 C 0.13 1.84 5.06 -4.04 -0.02 1.82 16 15 N -0.72 -8.63 5.28 -60.29 -0.32 -8.95 16 16 C 0.49 6.80 7.90 -10.99 -0.09 6.71 16 17 O -0.53 -9.75 16.43 5.56 0.09 -9.66 16 18 C 0.14 1.50 6.87 -5.20 -0.04 1.47 16 19 N -0.44 -5.72 3.12 -66.40 -0.21 -5.92 16 20 N -0.27 -3.17 12.51 33.13 0.41 -2.76 16 21 C 0.28 2.52 7.73 -153.76 -1.19 1.34 16 22 N -0.56 -5.72 3.13 -117.54 -0.37 -6.09 16 23 C 0.66 9.34 8.64 -87.03 -0.75 8.59 16 24 O -0.55 -9.52 17.83 5.08 0.09 -9.43 16 25 C 0.13 0.82 6.88 -3.77 -0.03 0.79 16 26 C -0.14 -0.41 5.94 -26.46 -0.16 -0.57 16 27 C -0.12 -0.26 5.96 -26.36 -0.16 -0.41 16 28 C -0.04 -0.16 6.32 -27.43 -0.17 -0.34 16 29 H 0.07 1.24 7.18 -51.93 -0.37 0.87 16 30 H 0.04 0.52 7.18 -51.93 -0.37 0.15 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.38 10.06 6.85 -40.82 -0.28 9.79 16 35 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 3.61 7.65 -40.82 -0.31 3.29 16 39 H 0.12 1.07 8.12 -51.93 -0.42 0.65 16 40 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.08 0.29 8.10 -51.93 -0.42 -0.13 16 45 H 0.07 0.15 8.11 -51.93 -0.42 -0.27 16 46 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 47 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -39.76 396.59 -9.34 -49.10 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.64 Total: 5.03 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: -2.76 Total: 11.44 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -0.07 Total: -70.09 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.18 Total: -19.09 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.76 -9.34 -49.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268010689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.388 kcal (2) G-P(sol) polarization free energy of solvation -39.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds