Wall clock time and date at job start Tue Mar 31 2020 20:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47019 * 2 1 4 4 C 1.35405 * 126.44119 * 265.02482 * 3 2 1 5 5 C 1.35559 * 107.16097 * 180.22530 * 4 3 2 6 6 N 1.33102 * 108.35398 * 359.62707 * 5 4 3 7 7 C 1.31617 * 109.09167 * 0.37854 * 6 5 4 8 8 C 1.47407 * 125.86555 * 179.79833 * 7 6 5 9 9 O 1.21607 * 120.00300 * 175.01001 * 8 7 6 10 10 N 1.34776 * 119.99640 * 355.02020 * 8 7 6 11 11 C 1.46498 * 120.00317 * 2.49605 * 10 8 7 12 12 C 1.46506 * 119.99918 * 182.50606 * 10 8 7 13 13 H 1.09006 * 109.46765 * 359.97438 * 12 10 8 14 14 C 1.53004 * 109.46774 * 239.99877 * 12 10 8 15 15 C 1.52992 * 109.47316 * 119.99450 * 12 10 8 16 16 N 1.46901 * 109.47352 * 304.99966 * 15 12 10 17 17 C 1.46901 * 110.99860 * 180.02562 * 16 15 12 18 18 C 1.50710 * 109.46815 * 180.02562 * 17 16 15 19 19 O 1.21294 * 119.99756 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99664 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99584 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99644 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99739 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00242 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00031 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46705 * 90.00284 * 25 23 21 27 27 H 1.48498 * 109.47189 * 210.00684 * 25 23 21 28 28 H 1.48501 * 109.46773 * 330.00616 * 25 23 21 29 29 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46987 * 300.00271 * 1 2 3 31 31 H 1.08997 * 109.47173 * 59.99957 * 1 2 3 32 32 H 1.08994 * 109.47220 * 240.00228 * 2 1 3 33 33 H 1.09002 * 109.46979 * 119.99611 * 2 1 3 34 34 H 1.07999 * 126.41810 * 359.96028 * 4 3 2 35 35 H 1.08002 * 125.82383 * 179.73322 * 5 4 3 36 36 H 1.09002 * 109.47004 * 83.87181 * 11 10 8 37 37 H 1.09004 * 109.47511 * 203.86852 * 11 10 8 38 38 H 1.08997 * 109.47025 * 323.87207 * 11 10 8 39 39 H 1.09003 * 109.46617 * 299.99640 * 14 12 10 40 40 H 1.08996 * 109.47406 * 59.99788 * 14 12 10 41 41 H 1.09001 * 109.46850 * 180.02562 * 14 12 10 42 42 H 1.09003 * 109.47239 * 65.00309 * 15 12 10 43 43 H 1.09009 * 109.47152 * 184.99872 * 15 12 10 44 44 H 1.00896 * 110.99991 * 303.95277 * 16 15 12 45 45 H 1.09000 * 109.47395 * 299.99795 * 17 16 15 46 46 H 1.08996 * 109.47000 * 60.00525 * 17 16 15 47 47 H 0.96998 * 120.00438 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99957 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3755 2.1080 -1.0852 5 6 2.7702 3.3256 -0.6388 6 7 2.6494 3.3456 0.6865 7 6 2.1990 2.1784 1.0954 8 6 1.9341 1.7967 2.4943 9 8 1.4321 0.7180 2.7457 10 7 2.2482 2.6434 3.4948 11 6 2.8020 3.9649 3.1894 12 6 2.0359 2.2422 4.8877 13 1 1.6203 1.2349 4.9164 14 6 1.0615 3.2146 5.5556 15 6 3.3711 2.2649 5.6342 16 7 4.3435 1.4234 4.9240 17 6 5.6404 1.4208 5.6141 18 6 6.6100 0.5495 4.8577 19 8 6.2553 -0.0141 3.8439 20 7 7.8708 0.3958 5.3084 21 6 8.7530 -0.3964 4.6200 22 1 8.4375 -0.8975 3.7169 23 6 10.0531 -0.5544 5.0843 24 7 10.4369 0.0550 6.1836 25 14 11.2549 -1.6343 4.1469 26 1 11.9780 -0.8137 3.1424 27 1 12.2305 -2.2285 5.0957 28 1 10.5115 -2.7192 3.4573 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3544 1.7779 -2.1133 35 1 3.1211 4.1411 -1.2539 36 1 1.9892 4.6586 2.9742 37 1 3.3715 4.3269 4.0455 38 1 3.4573 3.8924 2.3214 39 1 1.4768 4.2221 5.5269 40 1 0.1102 3.1985 5.0238 41 1 0.9039 2.9164 6.5921 42 1 3.7431 3.2884 5.6824 43 1 3.2290 1.8820 6.6449 44 1 3.9933 0.4841 4.8095 45 1 6.0284 2.4382 5.6625 46 1 5.5136 1.0317 6.6243 47 1 8.1543 0.8462 6.1193 48 1 11.3443 -0.0556 6.5079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268058490.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:32 Heat of formation + Delta-G solvation = -16.744847 kcal Electronic energy + Delta-G solvation = -29971.916867 eV Core-core repulsion = 25869.718294 eV Total energy + Delta-G solvation = -4102.198573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.26427 -40.73205 -40.10519 -37.97973 -36.37802 -35.95379 -35.37345 -33.31702 -32.87602 -31.23446 -30.29835 -28.97459 -27.76584 -26.71547 -25.35200 -24.66263 -24.08358 -22.49923 -21.50905 -21.03518 -20.14828 -19.88037 -18.38163 -18.03126 -17.77336 -17.09086 -16.93652 -16.57201 -16.37219 -16.06047 -15.74620 -15.58802 -15.31943 -15.11186 -14.93244 -14.72297 -14.51925 -14.38283 -14.08806 -13.84231 -13.65979 -13.53717 -13.29640 -13.21061 -13.08996 -12.99083 -12.86916 -12.78929 -12.54379 -12.43470 -12.23984 -12.13898 -11.81935 -11.53319 -11.22802 -10.83512 -10.69905 -10.38479 -10.03643 -9.68884 -9.38024 -9.29301 -8.48758 -5.97691 0.41660 1.35898 1.39229 1.45053 1.52221 1.71708 2.03410 2.21528 2.27495 2.45290 2.89804 3.18249 3.28605 3.50810 3.72371 3.79598 3.88099 4.04468 4.14285 4.30907 4.32060 4.33938 4.38374 4.41780 4.49014 4.51074 4.56580 4.64645 4.70598 4.76580 4.79827 4.84000 4.87676 5.01036 5.12257 5.18441 5.28988 5.34779 5.38165 5.58939 5.81722 5.87426 5.98754 6.09664 6.30766 6.32537 6.58486 6.81355 7.10632 7.14981 7.53955 8.10284 8.68724 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.003003 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.030631 B = 9323.290902 C =10694.957118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.092 3.908 3 N -0.417 5.417 4 C -0.018 4.018 5 C -0.053 4.053 6 N -0.454 5.454 7 C 0.111 3.889 8 C 0.598 3.402 9 O -0.576 6.576 10 N -0.567 5.567 11 C 0.084 3.916 12 C 0.137 3.863 13 H 0.080 0.920 14 C -0.147 4.147 15 C 0.051 3.949 16 N -0.679 5.679 17 C 0.068 3.932 18 C 0.436 3.564 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.075 0.925 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.268 1.268 28 H -0.275 1.275 29 H 0.094 0.906 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.222 0.778 35 H 0.203 0.797 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.335 0.665 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.126 8.572 -7.230 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 N -0.098 5.098 4 C -0.156 4.156 5 C -0.206 4.206 6 N -0.177 5.177 7 C -0.147 4.147 8 C 0.385 3.615 9 O -0.456 6.456 10 N -0.296 5.296 11 C -0.058 4.058 12 C 0.034 3.966 13 H 0.098 0.902 14 C -0.205 4.205 15 C -0.079 4.079 16 N -0.311 5.311 17 C -0.064 4.064 18 C 0.224 3.776 19 O -0.513 6.513 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.093 0.907 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.192 1.192 28 H -0.199 1.199 29 H 0.112 0.888 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.239 0.761 35 H 0.220 0.780 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.153 0.847 45 H 0.124 0.876 46 H 0.085 0.915 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.146 8.613 -7.470 23.148 hybrid contribution 0.734 -1.577 0.235 1.756 sum -19.412 7.036 -7.235 21.878 Atomic orbital electron populations 1.21963 0.92442 1.04163 1.02104 1.22214 0.97096 0.78152 1.05415 1.45480 1.44746 1.13339 1.06211 1.23616 1.04547 0.93297 0.94156 1.23099 1.07485 0.99095 0.90873 1.70325 1.15131 1.18872 1.13324 1.22590 1.12073 0.89509 0.90528 1.16723 0.78231 0.83588 0.82942 1.90720 1.47236 1.23380 1.84261 1.47325 1.60766 1.16477 1.05052 1.22116 0.99227 0.81612 1.02879 1.21282 0.95393 1.00446 0.79458 0.90158 1.22011 0.97873 0.99324 1.01274 1.22484 0.90926 0.99048 0.95418 1.60018 1.02287 1.17099 1.51658 1.21523 0.89625 1.00169 0.95109 1.20944 0.83708 0.85739 0.87207 1.90501 1.78528 1.53466 1.28774 1.41912 1.09650 1.43753 1.25623 1.19632 0.92578 1.25679 1.08597 0.90721 1.26028 0.98807 0.99023 0.97268 1.69668 1.20236 1.43802 1.22301 0.84944 0.77482 0.78050 0.77949 1.19562 1.19245 1.19949 0.88761 0.94089 0.90879 0.85972 0.90331 0.76143 0.78048 0.91955 0.90485 0.89645 0.90640 0.92563 0.89268 0.89009 0.92027 0.84700 0.87603 0.91462 0.76914 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 10.18 71.98 0.73 -1.95 16 2 C 0.09 2.00 6.14 86.38 0.53 2.53 16 3 N -0.42 -10.68 2.76 -516.43 -1.42 -12.10 16 4 C -0.02 -0.34 11.53 83.52 0.96 0.62 16 5 C -0.05 -1.18 11.85 83.88 0.99 -0.18 16 6 N -0.45 -13.12 7.68 -189.52 -1.46 -14.57 16 7 C 0.11 3.45 7.51 136.28 1.02 4.47 16 8 C 0.60 19.92 7.67 86.66 0.66 20.59 16 9 O -0.58 -21.07 13.62 -4.05 -0.06 -21.13 16 10 N -0.57 -15.84 2.49 -826.48 -2.05 -17.89 16 11 C 0.08 2.06 8.60 127.77 1.10 3.16 16 12 C 0.14 3.25 2.87 44.99 0.13 3.38 16 13 H 0.08 2.24 6.90 -2.38 -0.02 2.22 16 14 C -0.15 -2.35 9.19 71.98 0.66 -1.69 16 15 C 0.05 1.19 4.95 86.30 0.43 1.61 16 16 N -0.68 -23.07 5.85 -517.92 -3.03 -26.10 16 17 C 0.07 2.42 6.17 85.56 0.53 2.95 16 18 C 0.44 21.76 7.82 87.66 0.69 22.44 16 19 O -0.63 -36.86 15.78 -3.07 -0.05 -36.91 16 20 N -0.57 -30.30 5.29 -306.98 -1.62 -31.92 16 21 C -0.34 -19.64 9.68 84.04 0.81 -18.83 16 22 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 24 N -0.92 -50.29 13.05 21.66 0.28 -50.00 16 25 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 28 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 0.97 7.61 -2.39 -0.02 0.95 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.12 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.08 2.23 6.76 -2.39 -0.02 2.21 16 34 H 0.22 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.63 6.54 -2.39 -0.02 1.61 16 38 H 0.09 2.55 5.37 -2.39 -0.01 2.54 16 39 H 0.07 1.03 7.67 -2.39 -0.02 1.01 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.89 6.87 -2.39 -0.02 1.87 16 43 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.34 12.96 8.43 -89.70 -0.76 12.20 16 45 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 48 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -79.40 395.92 1.84 -77.56 By element: Atomic # 1 Polarization: 48.81 SS G_CDS: -0.49 Total: 48.32 kcal Atomic # 6 Polarization: 29.23 SS G_CDS: 9.72 Total: 38.94 kcal Atomic # 7 Polarization: -143.30 SS G_CDS: -9.30 Total: -152.60 kcal Atomic # 8 Polarization: -57.93 SS G_CDS: -0.10 Total: -58.04 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -79.40 1.84 -77.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268058490.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.811 kcal (2) G-P(sol) polarization free energy of solvation -79.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds