Wall clock time and date at job start Tue Mar 31 2020 20:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46994 * 2 1 4 4 C 1.35399 * 126.44041 * 265.02518 * 3 2 1 5 5 C 1.35571 * 107.15770 * 179.76375 * 4 3 2 6 6 N 1.33093 * 108.35051 * 0.24280 * 5 4 3 7 7 C 1.31617 * 109.09894 * 359.97438 * 6 5 4 8 8 C 1.47402 * 125.86572 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00076 * 174.11062 * 8 7 6 10 10 N 1.34775 * 120.00207 * 354.11443 * 8 7 6 11 11 C 1.46507 * 119.99837 * 3.20818 * 10 8 7 12 12 C 1.46507 * 120.00302 * 183.21280 * 10 8 7 13 13 H 1.08997 * 109.46754 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.46720 * 119.99764 * 12 10 8 15 15 C 1.52994 * 109.46941 * 239.99656 * 12 10 8 16 16 N 1.46895 * 109.47300 * 55.00243 * 15 12 10 17 17 C 1.46898 * 111.00489 * 179.97438 * 16 15 12 18 18 C 1.50702 * 109.47507 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99992 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99811 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99556 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00343 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99824 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99670 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00013 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46941 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46690 * 119.99963 * 25 23 21 28 28 H 1.48497 * 109.47041 * 240.00095 * 25 23 21 29 29 H 1.08999 * 109.47126 * 59.99479 * 1 2 3 30 30 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46963 * 299.99644 * 1 2 3 32 32 H 1.09000 * 109.46963 * 240.00356 * 2 1 3 33 33 H 1.08999 * 109.47126 * 120.00521 * 2 1 3 34 34 H 1.07991 * 126.42163 * 0.02562 * 4 3 2 35 35 H 1.07997 * 125.81971 * 180.26133 * 5 4 3 36 36 H 1.09007 * 109.46816 * 83.91423 * 11 10 8 37 37 H 1.08996 * 109.46913 * 203.91003 * 11 10 8 38 38 H 1.08999 * 109.47229 * 323.91652 * 11 10 8 39 39 H 1.09001 * 109.47341 * 299.99686 * 14 12 10 40 40 H 1.08997 * 109.47153 * 60.00678 * 14 12 10 41 41 H 1.09001 * 109.46613 * 180.02562 * 14 12 10 42 42 H 1.09007 * 109.47129 * 174.99741 * 15 12 10 43 43 H 1.09001 * 109.47513 * 294.99833 * 15 12 10 44 44 H 1.00905 * 111.00270 * 56.04382 * 16 15 12 45 45 H 1.08999 * 109.46994 * 299.99979 * 17 16 15 46 46 H 1.09000 * 109.47164 * 59.99240 * 17 16 15 47 47 H 0.96995 * 119.99991 * 359.97438 * 20 18 17 48 48 H 0.97009 * 119.99523 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3755 2.1080 -1.0851 5 6 2.7604 3.3292 -0.6396 6 7 2.6464 3.3465 0.6863 7 6 2.2016 2.1774 1.0957 8 6 1.9408 1.7943 2.4949 9 8 1.4288 0.7203 2.7460 10 7 2.2698 2.6344 3.4962 11 6 2.8216 3.9568 3.1912 12 6 2.0757 2.2251 4.8895 13 1 1.6597 1.2181 4.9177 14 6 3.4211 2.2413 5.6178 15 6 1.1122 3.1950 5.5763 16 7 -0.1378 3.2697 4.8083 17 6 -1.0895 4.1934 5.4398 18 6 -2.3563 4.2442 4.6252 19 8 -2.4564 3.5768 3.6173 20 7 -3.3777 5.0319 5.0161 21 6 -4.5299 5.0784 4.2747 22 1 -4.6191 4.4842 3.3773 23 6 -5.5832 5.8901 4.6779 24 7 -5.4749 6.6127 5.7701 25 14 -7.1530 5.9541 3.6674 26 1 -7.0230 5.0539 2.4935 27 1 -8.2984 5.5139 4.5038 28 1 -7.3857 7.3449 3.2019 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.3534 1.7783 -2.1133 35 1 3.1010 4.1482 -1.2556 36 1 2.0070 4.6533 2.9920 37 1 3.4038 4.3124 4.0413 38 1 3.4643 3.8888 2.3135 39 1 4.1076 1.5503 5.1285 40 1 3.8375 3.2482 5.5896 41 1 3.2768 1.9364 6.6543 42 1 0.8982 2.8413 6.5849 43 1 1.5671 4.1843 5.6271 44 1 -0.5459 2.3543 4.6919 45 1 -1.3186 3.8463 6.4473 46 1 -0.6500 5.1896 5.4900 47 1 -3.2975 5.5658 5.8218 48 1 -6.2101 7.1797 6.0514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268058491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:35 Heat of formation + Delta-G solvation = 8.667483 kcal Electronic energy + Delta-G solvation = -30025.951637 eV Core-core repulsion = 25924.855026 eV Total energy + Delta-G solvation = -4101.096611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34745 -39.63013 -38.19361 -36.79095 -35.25850 -34.42964 -33.71033 -31.89537 -31.14115 -30.31435 -29.39040 -27.54056 -26.74093 -25.01779 -24.32195 -23.47586 -22.91000 -21.60790 -20.48120 -19.30502 -18.95457 -17.82365 -17.41773 -16.87034 -16.23550 -16.03184 -15.60267 -15.14473 -14.94339 -14.70654 -14.49257 -14.22544 -13.98083 -13.94727 -13.78804 -13.51404 -13.44288 -13.16911 -12.76435 -12.73497 -12.60751 -12.26069 -12.16973 -12.11380 -11.90242 -11.64844 -11.43950 -11.38824 -11.34722 -11.02034 -10.85324 -10.31416 -10.18296 -10.12021 -9.85767 -9.75813 -9.47254 -8.68500 -8.47078 -8.31989 -7.96273 -7.89678 -6.37500 -3.77772 1.40311 2.36269 2.62560 3.18343 3.19146 3.29097 3.36871 3.48587 3.97295 4.11720 4.26214 4.39108 4.51667 4.62752 4.86553 4.90125 5.06346 5.11444 5.14901 5.18819 5.25536 5.30817 5.33252 5.37770 5.50232 5.56079 5.61018 5.64405 5.65089 5.84394 5.85637 5.91980 6.04146 6.07026 6.12789 6.18133 6.28602 6.32664 6.52302 6.70720 6.90647 7.29683 7.39454 7.59549 7.73864 7.77475 8.11688 8.23027 8.66949 9.23054 9.59857 10.12139 10.80548 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.003063 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.362011 B = 9140.459255 C =10567.670028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 N -0.414 5.414 4 C -0.034 4.034 5 C -0.033 4.033 6 N -0.440 5.440 7 C 0.154 3.846 8 C 0.611 3.389 9 O -0.546 6.546 10 N -0.567 5.567 11 C 0.074 3.926 12 C 0.139 3.861 13 H 0.100 0.900 14 C -0.159 4.159 15 C 0.049 3.951 16 N -0.662 5.662 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.580 6.580 20 N -0.566 5.566 21 C -0.296 4.296 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.179 0.821 35 H 0.175 0.825 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.350 0.650 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.752 -9.226 -5.893 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 N -0.094 5.094 4 C -0.172 4.172 5 C -0.186 4.186 6 N -0.162 5.162 7 C -0.105 4.105 8 C 0.397 3.603 9 O -0.424 6.424 10 N -0.297 5.297 11 C -0.069 4.069 12 C 0.036 3.964 13 H 0.118 0.882 14 C -0.217 4.217 15 C -0.082 4.082 16 N -0.294 5.294 17 C -0.081 4.081 18 C 0.228 3.772 19 O -0.464 6.464 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.196 0.804 35 H 0.193 0.807 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.169 0.831 45 H 0.059 0.941 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.609 -9.178 -6.208 23.399 hybrid contribution -1.387 -0.437 0.156 1.463 sum 19.222 -9.615 -6.052 22.328 Atomic orbital electron populations 1.22083 0.93104 1.03324 1.03785 1.22075 0.96727 0.78669 1.04701 1.45259 1.45013 1.13022 1.06141 1.22862 1.07179 0.94196 0.92988 1.22485 1.07425 0.97205 0.91486 1.70369 1.15878 1.18089 1.11893 1.22630 1.09319 0.88367 0.90215 1.16361 0.78158 0.83806 0.81942 1.90763 1.44503 1.23471 1.83632 1.47154 1.61552 1.16345 1.04659 1.22232 0.99743 0.82941 1.01960 1.21157 0.95320 0.99980 0.79982 0.88162 1.22107 0.96494 1.02666 1.00463 1.22351 0.91513 0.99806 0.94504 1.59998 1.04243 1.15328 1.49865 1.21658 0.92980 0.97993 0.95421 1.19836 0.84971 0.84553 0.87874 1.90537 1.82060 1.46464 1.27297 1.41860 1.13361 1.39603 1.25475 1.19744 0.90834 1.24415 1.07620 0.87987 1.25245 0.99665 0.96308 0.96786 1.69624 1.33509 1.28097 1.23241 0.85815 0.80971 0.78061 0.79590 1.19276 1.20796 1.20746 0.92342 0.90531 0.90459 0.89334 0.87608 0.80365 0.80746 0.91755 0.92312 0.87977 0.92087 0.91842 0.91196 0.94412 0.90689 0.83090 0.94063 0.89745 0.77521 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.17 37.16 0.38 -1.51 16 2 C 0.10 1.02 6.14 -4.04 -0.02 1.00 16 3 N -0.41 -5.12 2.76 -114.59 -0.32 -5.44 16 4 C -0.03 -0.35 11.53 -16.93 -0.20 -0.54 16 5 C -0.03 -0.38 11.85 -17.96 -0.21 -0.59 16 6 N -0.44 -6.25 7.68 -11.26 -0.09 -6.34 16 7 C 0.15 2.29 7.51 -154.52 -1.16 1.13 16 8 C 0.61 9.61 7.66 -12.53 -0.10 9.51 16 9 O -0.55 -9.33 13.62 5.27 0.07 -9.25 16 10 N -0.57 -7.74 2.49 -175.20 -0.44 -8.18 16 11 C 0.07 0.91 8.72 59.85 0.52 1.43 16 12 C 0.14 1.67 2.87 -67.93 -0.20 1.47 16 13 H 0.10 1.34 6.90 -51.93 -0.36 0.98 16 14 C -0.16 -1.38 9.18 37.16 0.34 -1.04 16 15 C 0.05 0.62 4.98 -3.83 -0.02 0.60 16 16 N -0.66 -11.46 5.85 -115.06 -0.67 -12.13 16 17 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 18 C 0.44 10.92 7.82 -10.98 -0.09 10.83 16 19 O -0.58 -16.57 15.78 5.54 0.09 -16.48 16 20 N -0.57 -14.83 5.29 -10.96 -0.06 -14.89 16 21 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 22 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.09 13.05 55.50 0.72 -24.36 16 25 Si 0.93 21.58 29.55 -169.99 -5.02 16.55 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.20 7.60 -51.93 -0.39 0.80 16 32 H 0.09 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.11 1.18 6.77 -51.93 -0.35 0.83 16 34 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.58 6.44 -51.93 -0.33 0.24 16 38 H 0.10 1.28 5.34 -51.93 -0.28 1.00 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.50 6.67 -51.93 -0.35 0.16 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.89 7.84 -51.93 -0.41 0.49 16 44 H 0.35 6.65 8.43 -39.29 -0.33 6.32 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.39 9.79 7.90 -40.82 -0.32 9.46 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -35.18 395.91 -8.05 -43.22 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -7.28 Total: 16.30 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: -1.02 Total: 15.04 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -0.84 Total: -71.35 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.16 Total: -25.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.18 -8.05 -43.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268058491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.890 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds