Wall clock time and date at job start Tue Mar 31 2020 20:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46994 * 2 1 4 4 C 1.35399 * 126.44041 * 265.02518 * 3 2 1 5 5 C 1.35571 * 107.15770 * 179.76375 * 4 3 2 6 6 N 1.33093 * 108.35051 * 0.24280 * 5 4 3 7 7 C 1.31617 * 109.09894 * 359.97438 * 6 5 4 8 8 C 1.47402 * 125.86572 * 180.02562 * 7 6 5 9 9 O 1.21603 * 120.00076 * 174.11062 * 8 7 6 10 10 N 1.34775 * 120.00207 * 354.11443 * 8 7 6 11 11 C 1.46507 * 119.99837 * 3.20818 * 10 8 7 12 12 C 1.46507 * 120.00302 * 183.21280 * 10 8 7 13 13 H 1.08997 * 109.46754 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.46720 * 119.99764 * 12 10 8 15 15 C 1.52994 * 109.46941 * 239.99656 * 12 10 8 16 16 N 1.46895 * 109.47300 * 55.00243 * 15 12 10 17 17 C 1.46898 * 111.00489 * 179.97438 * 16 15 12 18 18 C 1.50702 * 109.47507 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99992 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99811 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99556 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00343 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99824 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99670 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00013 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46941 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46690 * 119.99963 * 25 23 21 28 28 H 1.48497 * 109.47041 * 240.00095 * 25 23 21 29 29 H 1.08999 * 109.47126 * 59.99479 * 1 2 3 30 30 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46963 * 299.99644 * 1 2 3 32 32 H 1.09000 * 109.46963 * 240.00356 * 2 1 3 33 33 H 1.08999 * 109.47126 * 120.00521 * 2 1 3 34 34 H 1.07991 * 126.42163 * 0.02562 * 4 3 2 35 35 H 1.07997 * 125.81971 * 180.26133 * 5 4 3 36 36 H 1.09007 * 109.46816 * 83.91423 * 11 10 8 37 37 H 1.08996 * 109.46913 * 203.91003 * 11 10 8 38 38 H 1.08999 * 109.47229 * 323.91652 * 11 10 8 39 39 H 1.09001 * 109.47341 * 299.99686 * 14 12 10 40 40 H 1.08997 * 109.47153 * 60.00678 * 14 12 10 41 41 H 1.09001 * 109.46613 * 180.02562 * 14 12 10 42 42 H 1.09007 * 109.47129 * 174.99741 * 15 12 10 43 43 H 1.09001 * 109.47513 * 294.99833 * 15 12 10 44 44 H 1.00905 * 111.00270 * 56.04382 * 16 15 12 45 45 H 1.08999 * 109.46994 * 299.99979 * 17 16 15 46 46 H 1.09000 * 109.47164 * 59.99240 * 17 16 15 47 47 H 0.96995 * 119.99991 * 359.97438 * 20 18 17 48 48 H 0.97009 * 119.99523 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3755 2.1080 -1.0851 5 6 2.7604 3.3292 -0.6396 6 7 2.6464 3.3465 0.6863 7 6 2.2016 2.1774 1.0957 8 6 1.9408 1.7943 2.4949 9 8 1.4288 0.7203 2.7460 10 7 2.2698 2.6344 3.4962 11 6 2.8216 3.9568 3.1912 12 6 2.0757 2.2251 4.8895 13 1 1.6597 1.2181 4.9177 14 6 3.4211 2.2413 5.6178 15 6 1.1122 3.1950 5.5763 16 7 -0.1378 3.2697 4.8083 17 6 -1.0895 4.1934 5.4398 18 6 -2.3563 4.2442 4.6252 19 8 -2.4564 3.5768 3.6173 20 7 -3.3777 5.0319 5.0161 21 6 -4.5299 5.0784 4.2747 22 1 -4.6191 4.4842 3.3773 23 6 -5.5832 5.8901 4.6779 24 7 -5.4749 6.6127 5.7701 25 14 -7.1530 5.9541 3.6674 26 1 -7.0230 5.0539 2.4935 27 1 -8.2984 5.5139 4.5038 28 1 -7.3857 7.3449 3.2019 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.3534 1.7783 -2.1133 35 1 3.1010 4.1482 -1.2556 36 1 2.0070 4.6533 2.9920 37 1 3.4038 4.3124 4.0413 38 1 3.4643 3.8888 2.3135 39 1 4.1076 1.5503 5.1285 40 1 3.8375 3.2482 5.5896 41 1 3.2768 1.9364 6.6543 42 1 0.8982 2.8413 6.5849 43 1 1.5671 4.1843 5.6271 44 1 -0.5459 2.3543 4.6919 45 1 -1.3186 3.8463 6.4473 46 1 -0.6500 5.1896 5.4900 47 1 -3.2975 5.5658 5.8218 48 1 -6.2101 7.1797 6.0514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268058491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:34 Heat of formation + Delta-G solvation = -16.654046 kcal Electronic energy + Delta-G solvation = -30027.049661 eV Core-core repulsion = 25924.855026 eV Total energy + Delta-G solvation = -4102.194635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.26882 -40.72622 -40.11088 -37.96834 -36.38612 -35.95983 -35.38533 -33.32319 -32.87098 -31.24667 -30.30140 -28.98079 -27.77383 -26.71122 -25.35883 -24.66074 -24.08256 -22.50090 -21.50447 -21.04307 -20.15007 -19.88426 -18.37545 -18.02936 -17.76627 -17.04082 -17.02025 -16.51553 -16.40226 -16.08650 -15.72985 -15.58409 -15.33219 -15.12086 -14.89907 -14.72211 -14.60544 -14.33949 -14.10583 -13.85731 -13.65021 -13.54565 -13.34049 -13.15098 -13.07998 -13.03006 -12.88118 -12.78151 -12.54205 -12.42847 -12.25418 -12.14378 -11.79074 -11.54426 -11.22328 -10.82134 -10.71885 -10.39287 -10.04067 -9.68912 -9.39188 -9.27385 -8.49456 -5.98255 0.40972 1.33908 1.38644 1.45956 1.53234 1.71283 2.02534 2.23089 2.27210 2.43230 2.89949 3.17437 3.29829 3.50352 3.73600 3.79764 3.88125 4.03004 4.15338 4.29610 4.30710 4.33580 4.39532 4.41773 4.48243 4.50011 4.54061 4.66040 4.67603 4.72179 4.76939 4.84283 4.92710 5.02244 5.14578 5.18786 5.29051 5.35020 5.37813 5.59697 5.80946 5.87514 5.98892 6.09886 6.31182 6.33267 6.57975 6.81963 7.10210 7.15622 7.53189 8.09800 8.68277 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.003063 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.362011 B = 9140.459255 C =10567.670028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.418 5.418 4 C -0.015 4.015 5 C -0.054 4.054 6 N -0.456 5.456 7 C 0.110 3.890 8 C 0.597 3.403 9 O -0.575 6.575 10 N -0.567 5.567 11 C 0.082 3.918 12 C 0.137 3.863 13 H 0.080 0.920 14 C -0.148 4.148 15 C 0.052 3.948 16 N -0.679 5.679 17 C 0.068 3.932 18 C 0.436 3.564 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.074 0.926 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.277 1.277 27 H -0.268 1.268 28 H -0.268 1.268 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.025 0.975 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.224 0.776 35 H 0.202 0.798 36 H 0.036 0.964 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.335 0.665 45 H 0.067 0.933 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.873 -8.814 -6.214 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.020 4.020 3 N -0.098 5.098 4 C -0.153 4.153 5 C -0.206 4.206 6 N -0.179 5.179 7 C -0.147 4.147 8 C 0.384 3.616 9 O -0.455 6.455 10 N -0.296 5.296 11 C -0.060 4.060 12 C 0.034 3.966 13 H 0.098 0.902 14 C -0.206 4.206 15 C -0.078 4.078 16 N -0.311 5.311 17 C -0.064 4.064 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.092 0.908 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.201 1.201 27 H -0.193 1.193 28 H -0.193 1.193 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.045 0.955 32 H 0.152 0.848 33 H 0.109 0.891 34 H 0.241 0.759 35 H 0.219 0.781 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.153 0.847 45 H 0.085 0.915 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.760 -8.732 -6.462 24.321 hybrid contribution -1.714 -0.557 0.195 1.813 sum 20.046 -9.289 -6.267 22.965 Atomic orbital electron populations 1.22012 0.94308 1.03932 1.01383 1.22195 0.95583 0.78081 1.06175 1.45506 1.44549 1.13624 1.06151 1.23632 1.04260 0.93325 0.94127 1.23107 1.07872 0.98821 0.90837 1.70301 1.15914 1.18063 1.13581 1.22576 1.12123 0.89512 0.90538 1.16735 0.78025 0.83879 0.82956 1.90725 1.45900 1.24637 1.84235 1.47320 1.60895 1.16396 1.05034 1.22166 0.98798 0.81782 1.03295 1.21290 0.97072 0.98695 0.79583 0.90163 1.22036 0.94103 1.03545 1.00902 1.22476 0.89372 1.00936 0.94992 1.60003 1.05286 1.14266 1.51544 1.21515 0.90160 0.99583 0.95124 1.20957 0.86291 0.82810 0.87617 1.90507 1.83196 1.47974 1.29566 1.41908 1.13342 1.40161 1.25513 1.19662 0.92883 1.25919 1.07981 0.90816 1.26030 1.02145 0.95214 0.97723 1.69675 1.34645 1.27869 1.23783 0.84884 0.77220 0.78372 0.77912 1.20135 1.19306 1.19331 0.91815 0.88500 0.95520 0.84842 0.89056 0.75943 0.78103 0.94522 0.89323 0.88150 0.92278 0.90471 0.89240 0.92148 0.89217 0.84710 0.91472 0.87709 0.76913 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 10.17 71.98 0.73 -2.99 16 2 C 0.10 2.01 6.14 86.38 0.53 2.54 16 3 N -0.42 -10.21 2.76 -516.44 -1.42 -11.63 16 4 C -0.01 -0.27 11.53 83.53 0.96 0.69 16 5 C -0.05 -1.17 11.85 83.88 0.99 -0.18 16 6 N -0.46 -13.12 7.68 -189.53 -1.46 -14.58 16 7 C 0.11 3.38 7.51 136.27 1.02 4.41 16 8 C 0.60 19.87 7.66 86.66 0.66 20.54 16 9 O -0.57 -21.18 13.62 -4.04 -0.06 -21.23 16 10 N -0.57 -15.88 2.49 -826.48 -2.05 -17.93 16 11 C 0.08 2.02 8.72 127.77 1.11 3.14 16 12 C 0.14 3.24 2.87 44.99 0.13 3.37 16 13 H 0.08 2.24 6.90 -2.39 -0.02 2.22 16 14 C -0.15 -2.27 9.18 71.98 0.66 -1.61 16 15 C 0.05 1.25 4.98 86.30 0.43 1.67 16 16 N -0.68 -23.80 5.85 -517.95 -3.03 -26.83 16 17 C 0.07 2.50 6.17 85.56 0.53 3.03 16 18 C 0.44 22.14 7.82 87.66 0.69 22.83 16 19 O -0.63 -37.58 15.78 -3.08 -0.05 -37.63 16 20 N -0.57 -30.71 5.29 -306.98 -1.62 -32.33 16 21 C -0.33 -19.85 9.68 84.04 0.81 -19.03 16 22 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 24 N -0.92 -50.60 13.05 21.66 0.28 -50.32 16 25 Si 0.99 44.23 29.55 68.60 2.03 46.25 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.03 0.88 7.60 -2.39 -0.02 0.87 16 32 H 0.13 1.45 8.13 -2.39 -0.02 1.43 16 33 H 0.09 2.11 6.77 -2.39 -0.02 2.10 16 34 H 0.22 1.87 8.06 -2.92 -0.02 1.85 16 35 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.09 1.59 6.44 -2.39 -0.02 1.58 16 38 H 0.10 2.55 5.34 -2.39 -0.01 2.54 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.99 6.67 -2.39 -0.02 0.97 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.09 1.92 7.84 -2.39 -0.02 1.90 16 44 H 0.34 13.35 8.43 -89.69 -0.76 12.60 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 47 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 48 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -81.56 395.91 1.86 -79.70 By element: Atomic # 1 Polarization: 48.78 SS G_CDS: -0.49 Total: 48.29 kcal Atomic # 6 Polarization: 28.51 SS G_CDS: 9.73 Total: 38.24 kcal Atomic # 7 Polarization: -144.32 SS G_CDS: -9.30 Total: -153.63 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.10 Total: -58.86 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -81.56 1.86 -79.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268058491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.049 kcal (2) G-P(sol) polarization free energy of solvation -81.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds